Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

RKM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C23C24doub1.35Å1.36ÅAromatic
C23C22sing1.43Å1.41ÅAromatic
C24C25sing1.43Å1.41ÅAromatic
N6C22sing1.37Å1.34ÅAromatic
N6C21doub1.31Å1.31ÅAromatic
C22C19doub1.42Å1.44ÅAromatic
C25N7sing1.37Å1.38ÅAromatic
C25C26doub1.42Å1.43ÅAromatic
N7C27doub1.31Å1.33ÅAromatic
C21C20sing1.40Å1.41ÅAromatic
C19C26sing1.43Å1.40ÅAromatic
C19N5sing1.36Å1.38ÅAromatic
C26N8sing1.36Å1.38ÅAromatic
C27C28sing1.40Å1.42ÅAromatic
C20N5doub1.33Å1.33ÅAromatic
N5RUsing2.06Å2.00Å
N8C28doub1.33Å1.31ÅAromatic
N8RUsing2.06Å2.02Å
C38C37sing1.40Å1.40ÅAromatic
C38N12doub1.33Å1.31ÅAromatic
C37N11doub1.31Å1.32ÅAromatic
C12C11sing1.40Å1.37ÅAromatic
C12N1doub1.33Å1.36ÅAromatic
N12RUsing2.07Å2.06Å
N12C36sing1.36Å1.39ÅAromatic
RUN1sing2.03Å2.05Å
RUN2sing2.03Å2.04Å
RUN9sing2.06Å2.02Å
N11C35sing1.37Å1.37ÅAromatic
C11C9doub1.37Å1.39ÅAromatic
N1C10sing1.35Å1.38ÅAromatic
C36C35doub1.42Å1.38ÅAromatic
C36C29sing1.43Å1.42ÅAromatic
C35C34sing1.43Å1.41ÅAromatic
C9C8sing1.40Å1.40ÅAromatic
C10C8doub1.42Å1.41ÅAromatic
C10C1sing1.46Å1.41ÅAromatic
N2C1sing1.35Å1.39ÅAromatic
N2C2doub1.33Å1.36ÅAromatic
C8C7sing1.46Å1.42ÅAromatic
C1C5doub1.42Å1.40ÅAromatic
C2C3sing1.40Å1.37ÅAromatic
N9C29sing1.36Å1.39ÅAromatic
N9C30doub1.33Å1.32ÅAromatic
C29C32doub1.42Å1.43ÅAromatic
C34C33doub1.35Å1.38ÅAromatic
C3C4doub1.37Å1.40ÅAromatic
C7N4sing1.33Å1.36ÅAromatic
C7C6doub1.43Å1.43ÅAromatic
C5C4sing1.40Å1.38ÅAromatic
C5C6sing1.46Å1.46ÅAromatic
C30C31sing1.40Å1.40ÅAromatic
N4C13doub1.35Å1.33ÅAromatic
C6N3sing1.33Å1.33ÅAromatic
C32C33sing1.43Å1.42ÅAromatic
C32N10sing1.37Å1.35ÅAromatic
C31N10doub1.31Å1.33ÅAromatic
C13C14sing1.42Å1.38ÅAromatic
C13C15sing1.43Å1.44ÅAromatic
N3C15doub1.35Å1.35ÅAromatic
C14C18doub1.37Å1.38ÅAromatic
C15C16sing1.41Å1.40ÅAromatic
C18C17sing1.41Å1.39ÅAromatic
C16C17doub1.38Å1.36ÅAromatic
C17C39sing1.51Å1.54Å
C14H14sing0.94Å1.08Å
C9H9sing0.94Å1.08Å
C11H11sing0.94Å1.08Å
C12H12sing0.94Å1.08Å
C18H18sing0.95Å1.08Å
C16H16sing0.95Å1.08Å
C4H4sing0.94Å1.08Å
C3H3sing0.94Å1.08Å
C2H2sing0.94Å1.08Å
C38H38sing0.95Å1.08Å
C20H20sing0.95Å1.08Å
C21H21sing0.95Å1.08Å
C23H23sing0.94Å1.08Å
C24H24sing0.94Å1.08Å
C27H27sing0.95Å1.08Å
C28H28sing0.95Å1.08Å
C30H30sing0.95Å1.08Å
C31H31sing0.95Å1.08Å
C33H33sing0.94Å1.08Å
C34H34sing0.94Å1.08Å
C37H37sing0.95Å1.08Å
C39H391sing0.97Å1.10Å
C39H39sing0.97Å1.10Å
C39H392sing0.97Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C24C23C22122.6°121.2°
C23C24C25118.5°121.2°
C24C23H23118.7°119.4°
C23C24H24120.8°119.5°
C23C22N6122.0°120.6°
C23C22C19119.3°119.4°
C22C23H23118.7°119.4°
C24C25N7119.1°120.7°
C24C25C26121.4°119.4°
C25C24H24120.8°119.3°
C22N6C21117.4°117.5°
N6C22C19118.6°120.0°
N6C21C20122.6°122.4°
N6C21H21118.7°118.7°
C22C19C26118.4°119.4°
C22C19N5125.0°120.9°
N7C25C26119.5°119.9°
C25N7C27117.9°117.6°
C25C26C19119.6°119.4°
C25C26N8121.8°120.8°
N7C27C28120.8°122.4°
N7C27H27119.6°118.7°
C21C20N5125.0°121.7°
C21C20H20117.5°119.1°
C20C21H21118.7°118.9°
C26C19N5116.3°119.8°
C19C26N8118.3°119.8°
C19N5C20110.5°117.5°
C19N5RU111.9°107.9°
C26N8C28115.5°117.6°
C26N8RU110.1°107.9°
C27C28N8124.1°121.7°
C28C27H27119.6°118.9°
C27C28H28117.9°119.2°
C20N5RU137.0°134.6°
N5C20H20117.5°119.1°
N5RUN883.2°84.7°
N5RUN1294.3°92.7°
N5RUN191.4°90.3°
N5RUN292.8°92.6°
N5RUN9174.9°176.1°
C28N8RU133.9°134.5°
N8C28H28117.9°119.1°
N8RUN1288.5°88.9°
N8RUN194.9°94.0°
N8RUN2174.0°176.0°
N8RUN993.1°92.4°
C37C38N12121.7°121.6°
C38C37N11124.1°122.4°
C37C38H38119.2°119.2°
C38C37H37117.9°118.9°
C38N12RU133.5°134.5°
C38N12C36114.6°117.7°
N12C38H38119.2°119.1°
C37N11C35115.9°117.6°
N11C37H37118.0°118.7°
C11C12N1121.8°123.9°
C12C11C9121.4°118.8°
C12C11H11119.3°120.4°
C11C12H12119.1°118.1°
C12N1RU128.8°131.2°
C12N1C10117.8°117.5°
N1C12H12119.1°117.9°
RUN12C36111.9°107.8°
N12RUN1173.7°176.0°
N12RUN296.2°94.2°
N12RUN982.0°84.6°
N12C36C35123.7°120.8°
N12C36C29116.0°119.8°
N1RUN280.8°83.0°
N1RUN992.5°92.5°
RUN1C10112.3°111.3°
N2RUN991.2°90.4°
RUN2C1113.7°111.3°
RUN2C2129.9°131.3°
RUN9C29112.1°107.9°
RUN9C30132.6°134.5°
N11C35C36119.9°119.9°
N11C35C34121.6°120.7°
C11C9C8118.3°119.3°
C11C9H9120.8°119.9°
C9C11H11119.3°120.8°
N1C10C8121.8°122.7°
N1C10C1117.3°117.2°
C35C36C29120.3°119.4°
C36C35C34118.5°119.4°
C36C29N9117.8°119.8°
C36C29C32121.1°119.4°
C35C34C33122.5°121.2°
C35C34H34118.7°119.4°
C9C8C10118.5°117.8°
C9C8C7121.8°122.0°
C8C9H9120.8°120.8°
C8C10C1120.6°120.1°
C10C8C7119.7°120.2°
C10C1N2115.1°117.2°
C10C1C5121.6°120.1°
C1N2C2115.8°117.4°
N2C1C5123.1°122.7°
N2C2C3124.0°123.9°
N2C2H2118.0°117.9°
C8C7N4120.2°118.6°
C8C7C6119.9°119.7°
C1C5C4118.2°117.8°
C1C5C6118.4°120.2°
C2C3C4118.9°118.8°
C2C3H3120.5°120.4°
C3C2H2118.0°118.2°
C29N9C30114.9°117.6°
N9C29C32121.1°120.8°
N9C30C31123.3°121.7°
N9C30H30118.3°119.1°
C29C32C33117.1°119.4°
C29C32N10122.0°120.0°
C34C33C32120.4°121.2°
C34C33H33119.8°119.5°
C33C34H34118.7°119.4°
C3C4C5119.7°119.3°
C3C4H4120.2°119.9°
C4C3H3120.6°120.8°
N4C7C6119.9°121.7°
C7N4C13118.5°117.1°
C7C6C5119.7°119.7°
C7C6N3120.8°121.7°
C4C5C6123.4°122.0°
C5C4H4120.1°120.8°
C5C6N3119.5°118.5°
C30C31N10123.3°122.4°
C31C30H30118.3°119.2°
C30C31H31118.3°118.9°
N4C13C14120.4°120.0°
N4C13C15122.4°121.2°
C6N3C15120.4°117.1°
C33C32N10120.9°120.6°
C32C33H33119.8°119.3°
C32N10C31115.3°117.5°
N10C31H31118.3°118.7°
C14C13C15117.2°118.8°
C13C14C18119.0°120.0°
C13C14H14120.5°119.8°
C13C15N3118.0°121.1°
C13C15C16122.5°119.1°
N3C15C16119.4°119.9°
C14C18C17123.7°122.1°
C18C14H14120.5°120.2°
C14C18H18118.2°119.0°
C15C16C17118.2°121.4°
C15C16H16120.9°119.1°
C18C17C16119.3°118.7°
C18C17C39123.6°120.3°
C17C18H18118.1°118.9°
C16C17C39116.9°121.0°
C17C16H16120.9°119.5°
C17C39H391109.5°109.9°
C17C39H39109.5°109.8°
C17C39H392109.5°109.6°
H391C39H39109.4°109.1°
H391C39H392109.5°109.2°
H39C39H392109.5°109.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C24C23C22H23180.0°180.0°
C23C24C25H24180.0°180.0°
C24C23C22N6175.8°180.0°
C24C23C22C190.5°0.0°
C23C24C25N7179.8°180.0°
C23C24C25C263.5°0.0°
C22C23C24C250.5°0.0°
C23C22N6C19176.3°180.0°
C23C22N6C21179.6°180.0°
C23C22C19C261.4°0.0°
C23C22C19N5176.0°180.0°
C22C23C24H24179.5°180.0°
C24C25N7C26176.3°180.0°
C24C25N7C27176.9°180.0°
C24C25C26C195.5°0.0°
C24C25C26N8179.9°180.0°
C25C24C23H23179.5°180.0°
C22N6C21C203.2°0.0°
N6C22C19C26177.8°180.0°
N6C22C19N57.6°0.0°
C22N6C21H21176.8°179.9°
N6C22C23H234.2°0.0°
C21N6C22C193.3°0.0°
N6C21C20H21180.0°179.9°
N6C21C20N57.4°0.1°
N6C21C20H20172.7°180.0°
C22C19C26C254.3°0.0°
C22C19C26N5175.1°180.0°
C22C19C26N8178.9°180.0°
C22C19N5C2010.3°0.1°
C22C19N5RU177.6°179.8°
C19C22C23H23179.4°180.0°
N7C25C26C19178.3°180.0°
N7C25C26N83.9°0.0°
C25N7C27C280.6°0.0°
N7C25C24H240.2°0.0°
C25N7C27H27179.4°180.0°
C26C25N7C270.6°0.0°
C25C26C19N8174.6°180.0°
C25C26C19N5179.4°180.0°
C25C26N8C286.9°0.0°
C25C26N8RU179.7°179.8°
C26C25C24H24176.4°180.0°
N7C27C28H27180.0°180.0°
N7C27C28N84.2°0.0°
N7C27C28H28175.8°180.0°
C21C20N5C1910.1°0.1°
C21C20N5H20180.0°179.9°
C21C20N5RU179.2°179.8°
C26C19N5C20175.0°180.0°
C26C19N5RU2.9°0.2°
C19C26N8C28178.6°180.0°
C19C26N8RU5.9°0.2°
N5C19C26N86.1°0.0°
C19N5C20RU169.2°179.7°
C19N5RUN80.2°0.2°
C19N5RUN1288.2°88.4°
C19N5RUN194.5°94.3°
C19N5RUN2175.3°177.3°
C19N5RUN944.6°41.2°
C19N5C20H20169.9°180.0°
C26N8C28C277.1°0.0°
C26N8RUN53.2°0.2°
C26N8C28RU170.5°179.7°
C26N8RUN1297.7°92.6°
C26N8RUN187.6°90.2°
C26N8RUN244.6°47.6°
C26N8RUN9179.6°177.2°
C26N8C28H28172.9°180.0°
C27C28N8H28180.0°180.0°
C27C28N8RU177.6°179.8°
C20N5RUN8168.8°179.9°
C20N5RUN1280.9°91.3°
C20N5RUN196.4°86.0°
C20N5RUN215.6°3.0°
C20N5RUN9124.5°138.6°
N5C20C21H21172.6°180.0°
N5RUN8C28174.1°180.0°
N5RUN8N1294.5°92.8°
N5RUN8N190.8°90.0°
N5RUN8N247.8°47.4°
N5RUN8N9176.4°177.4°
N5RUN12C388.0°2.8°
N5RUN1C1295.7°87.5°
N5RUN12N1154.6°138.8°
N5RUN12N293.3°92.8°
N5RUN12N9176.4°177.1°
N5RUN12C36173.7°174.8°
N5RUN1N292.6°92.6°
N5RUN1N9176.6°177.2°
N5RUN2N9176.7°177.6°
N5RUN1C1096.5°93.5°
N5RUN2C189.6°90.8°
N5RUN2C281.2°89.9°
N5RUN9C2939.9°45.1°
N5RUN9C30132.3°132.4°
RUN5C20H200.8°0.3°
C28N8RUN1291.4°87.1°
C28N8RUN183.3°90.1°
C28N8RUN2126.2°132.6°
C28N8RUN99.5°2.6°
N8C28C27H27175.8°180.0°
N8RUN12C3891.1°87.4°
N8RUN1C1212.4°2.8°
N8RUN12N1122.4°136.6°
N8RUN12N2176.3°177.4°
N8RUN12N993.4°92.5°
N8RUN12C3690.6°90.2°
N8RUN1N2175.9°177.3°
N8RUN1N993.4°92.6°
N8RUN2N9135.8°135.2°
N8RUN1C10179.8°178.2°
N8RUN2C142.1°43.6°
N8RUN2C2128.7°137.1°
N8RUN9C2984.0°86.3°
N8RUN9C3088.2°91.2°
RUN8C28H282.4°0.3°
C37C38N12H38180.0°179.9°
C38C37N11H37180.0°179.9°
C37C38N12RU178.2°177.3°
C37C38N12C363.5°0.1°
C38C37N11C350.2°0.0°
N12C38C37N112.2°0.1°
C38N12RUC36178.3°177.6°
C38N12RUN1146.5°136.0°
C38N12RUN285.3°90.0°
C38N12RUN9175.5°179.9°
C38N12C36C352.9°0.1°
C38N12C36C29177.6°180.0°
N12C38C37H37177.8°180.0°
C37N11C35C360.8°0.0°
C37N11C35C34178.4°180.0°
N11C37C38H38177.8°180.0°
C11C12N1H12180.0°179.9°
C11C12N1RU173.4°179.1°
C12C11C9H11180.0°179.9°
C11C12N1C106.2°0.1°
C12C11C9C80.1°0.0°
C12C11C9H9179.9°179.9°
C12N1RUN12109.6°133.7°
C12N1RUC10167.7°179.0°
C12N1RUN2171.7°179.9°
C12N1RUN980.9°89.8°
N1C12C11C92.6°0.1°
C12N1C10C87.5°0.1°
C12N1C10C1178.0°180.0°
N1C12C11H11177.4°180.0°
N12RUN1N262.0°46.2°
N12RUN1N928.7°43.9°
N12RUN2N982.1°84.7°
N12RUN1C1058.1°45.4°
RUN12C36C35178.4°178.0°
RUN12C36C291.0°1.9°
N12RUN2C1175.7°176.3°
N12RUN2C213.5°3.0°
N12RUN9C294.0°2.3°
N12RUN9C30176.2°179.8°
RUN12C38H381.8°2.6°
C36N12RUN131.8°46.4°
C36N12RUN293.1°92.4°
C36N12RUN92.8°2.3°
N12C36C35N110.7°0.1°
N12C36C35C29179.5°179.9°
N12C36C35C34177.0°179.9°
N12C36C29N92.5°0.0°
N12C36C29C32179.6°179.9°
C36N12C38H38176.5°179.9°
N1RUN2N992.3°92.4°
RUN1C10C8176.7°179.2°
RUN1C10C18.8°0.8°
N1RUN2C11.3°0.8°
N1RUN2C2172.1°179.9°
N1RUN9C29179.0°179.5°
N1RUN9C306.8°3.0°
RUN1C12H126.6°1.0°
N2RUN1C103.9°0.9°
RUN2C1C106.4°0.6°
RUN2C1C2172.2°179.4°
RUN2C1C5178.6°179.3°
RUN2C2C3175.5°179.1°
N2RUN9C29100.2°96.5°
N2RUN9C3087.6°86.0°
RUN2C2H24.5°0.8°
N9RUN1C1086.8°89.3°
RUN9C29C364.8°2.0°
N9RUN2C193.7°91.6°
N9RUN2C295.5°87.7°
RUN9C29C30173.7°178.0°
RUN9C29C32177.4°178.0°
RUN9C30C31176.8°177.3°
RUN9C30H303.2°2.6°
N11C35C36C34177.7°180.0°
N11C35C36C29179.8°180.0°
N11C35C34C33179.1°180.0°
N11C35C34H340.9°0.0°
C35N11C37H37179.9°179.9°
C11C9C8H9180.0°179.9°
C11C9C8C101.1°0.0°
C11C9C8C7179.0°180.0°
C9C11C12H12177.4°180.0°
N1C10C8C95.0°0.0°
N1C10C8C1174.3°180.0°
N1C10C1N210.2°0.1°
N1C10C8C7175.1°180.0°
N1C10C1C5174.7°180.0°
C10N1C12H12173.7°180.0°
C35C36C29N9178.0°180.0°
C35C36C29C320.1°0.0°
C36C35C34C333.2°0.0°
C36C35C34H34176.8°180.0°
C29C36C35C342.5°0.0°
C36C29N9C32177.9°180.0°
C36C29N9C30178.5°180.0°
C36C29C32C332.1°0.0°
C36C29C32N10179.5°180.0°
C35C34C33H34180.0°180.0°
C35C34C33C321.2°0.0°
C35C34C33H33178.8°180.0°
C9C8C10C7179.9°179.9°
C9C8C10C1179.3°180.0°
C9C8C7N40.5°0.0°
C9C8C7C6178.4°180.0°
C8C9C11H11179.9°179.9°
C8C10C1N2175.2°179.9°
C8C10C1C50.1°0.0°
C10C8C7N4179.4°179.9°
C10C8C7C61.8°0.0°
C10C8C9H9178.9°180.0°
C10C1N2C5175.0°179.9°
C10C1N2C2178.6°180.0°
C1C10C8C70.8°0.0°
C10C1C5C4179.1°180.0°
C10C1C5C60.4°0.0°
C1N2C2C34.8°0.1°
N2C1C5C44.4°0.1°
N2C1C5C6175.1°179.9°
C1N2C2H2175.1°180.0°
C2N2C1C56.4°0.1°
N2C2C3H2180.0°179.9°
N2C2C3C41.2°0.0°
N2C2C3H3178.8°180.0°
C8C7N4C6178.8°180.0°
C8C7C6C52.0°0.0°
C8C7N4C13179.1°180.0°
C8C7C6N3178.7°180.0°
C7C8C9H91.0°0.1°
C1C5C4C30.4°0.0°
C1C5C6C71.3°0.0°
C1C5C4C6179.4°180.0°
C1C5C6N3179.4°180.0°
C1C5C4H4179.6°179.9°
C2C3C4H3180.0°180.0°
C2C3C4C51.1°0.0°
C2C3C4H4178.9°179.9°
C29N9C30C314.8°0.1°
N9C29C32C33179.9°180.0°
N9C29C32N101.7°0.0°
C29N9C30H30175.3°180.0°
C30N9C29C323.7°0.0°
N9C30C31H30180.0°179.9°
N9C30C31N104.0°0.1°
N9C30C31H31176.1°180.0°
C29C32C33C341.5°0.0°
C29C32C33N10178.4°180.0°
C29C32N10C310.5°0.0°
C29C32C33H33178.5°180.0°
C34C33C32H33180.0°180.0°
C34C33C32N10179.9°180.0°
C3C4C5H4180.0°179.9°
C3C4C5C6179.0°180.0°
C4C3C2H2178.7°180.0°
N4C7C6C5179.1°179.9°
N4C7C6N30.2°0.0°
C7N4C13C14179.8°179.9°
C7N4C13C150.3°0.1°
C7C6C5C4178.1°180.0°
C7C6C5N3179.3°180.0°
C6C7N4C130.3°0.1°
C7C6N3C151.2°0.0°
C4C5C6N31.2°0.0°
C5C4C3H3178.9°180.0°
C5C6N3C15178.1°180.0°
C6C5C4H41.0°0.1°
C30C31N10C321.5°0.1°
C30C31N10H31180.0°180.0°
N4C13C14C15179.9°180.0°
N4C13C15N31.3°0.0°
N4C13C14C18178.5°180.0°
N4C13C15C16179.4°180.0°
N4C13C14H141.5°0.0°
C6N3C15C131.7°0.0°
C6N3C15C16179.0°179.9°
C33C32N10C31178.8°180.0°
C32C33C34H34178.8°180.0°
C32N10C31H31178.5°180.0°
N10C32C33H330.1°0.0°
N10C31C30H30176.0°180.0°
C14C13C15N3178.9°180.0°
C13C14C18H14180.0°180.0°
C14C13C15C160.4°0.0°
C13C14C18C172.5°0.2°
C13C14C18H18177.5°179.9°
C13C15N3C16179.3°180.0°
C15C13C14C181.4°0.0°
C13C15C16C170.5°0.2°
C15C13C14H14178.7°180.0°
C13C15C16H16179.5°179.9°
N3C15C16C17178.8°179.8°
N3C15C16H161.2°0.1°
C14C18C17H18180.0°179.7°
C14C18C17C162.5°0.4°
C14C18C17C39179.0°179.9°
C15C16C17C181.4°0.4°
C15C16C17H16180.0°179.7°
C15C16C17C39178.1°179.9°
C18C17C16C39176.7°179.6°
C17C18C14H14177.5°179.8°
C18C17C16H16178.6°179.9°
C18C17C39H39192.0°149.9°
C18C17C39H39148.0°29.9°
C18C17C39H39228.0°90.0°
C16C17C18H18177.5°179.9°
C16C17C39H39191.5°30.5°
C16C17C39H3928.5°150.6°
C16C17C39H392148.5°89.5°
C39C17C18H181.0°0.3°
C39C17C16H161.9°0.4°
C17C39H391H39120.0°120.5°
C17C39H391H392120.0°120.2°
C17C39H39H392120.0°120.2°
H14C14C18H182.5°0.1°
H9C9C11H110.0°0.0°
H11C11C12H122.6°0.1°
H4C4C3H31.1°0.1°
H3C3C2H21.3°0.1°
H38C38C37H372.2°0.1°
H20C20C21H217.3°0.1°
H23C23C24H240.5°0.1°
H27C27C28H284.2°0.0°
H30C30C31H313.9°0.0°
H33C33C34H341.2°0.0°
H391C39H39H392120.0°119.3°

259015

PDB entries from 2026-09-02

PDB statisticsPDBj update infoContact PDBjnumon