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SummaryGeometryRelated PDB entries

RKL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
RUN1sing2.03Å2.10Å
RUN2sing2.03Å2.02Å
RUN5sing2.06Å2.04Å
RUN8sing2.06Å1.98Å
RUN9sing2.06Å1.90Å
RUN12sing2.07Å2.11Å
C1N2doub1.35Å1.48ÅAromatic
C1C5sing1.42Å1.40ÅAromatic
C1C10sing1.46Å1.46ÅAromatic
N1C10doub1.35Å1.42ÅAromatic
N1C12sing1.32Å1.37ÅAromatic
C2N2sing1.33Å1.35ÅAromatic
C2C3doub1.40Å1.39ÅAromatic
C2H2sing0.94Å1.08Å
C3C4sing1.37Å1.37ÅAromatic
C3H3sing0.94Å1.08Å
N3C6doub1.33Å1.35ÅAromatic
N3C15sing1.35Å1.31ÅAromatic
C4C5doub1.40Å1.43ÅAromatic
C4H4sing0.94Å1.08Å
N4C7doub1.33Å1.35ÅAromatic
N4C13sing1.35Å1.34ÅAromatic
C5C6sing1.46Å1.47ÅAromatic
N5C19doub1.36Å1.34ÅAromatic
N5C20sing1.33Å1.36ÅAromatic
C6C7sing1.43Å1.45ÅAromatic
N6C21sing1.31Å1.40ÅAromatic
N6C22doub1.37Å1.40ÅAromatic
C7C8sing1.46Å1.45ÅAromatic
N7C25doub1.37Å1.40ÅAromatic
N7C27sing1.31Å1.34ÅAromatic
C8C9doub1.40Å1.41ÅAromatic
C8C10sing1.42Å1.44ÅAromatic
N8C26doub1.36Å1.40ÅAromatic
N8C28sing1.32Å1.35ÅAromatic
C9C11sing1.37Å1.38ÅAromatic
C9H9sing0.94Å1.08Å
N9C29doub1.36Å1.50ÅAromatic
N9C30sing1.33Å1.34ÅAromatic
N10C31sing1.31Å1.40ÅAromatic
N10C32doub1.37Å1.41ÅAromatic
C11C12doub1.40Å1.41ÅAromatic
C11H11sing0.94Å1.08Å
N11C35doub1.37Å1.30ÅAromatic
N11C37sing1.31Å1.38ÅAromatic
C12H12sing0.94Å1.08Å
N12C36doub1.36Å1.44ÅAromatic
N12C38sing1.33Å1.36ÅAromatic
C13C14sing1.42Å1.45ÅAromatic
C13C15doub1.43Å1.44ÅAromatic
C14C18doub1.36Å1.36ÅAromatic
C14H14sing0.94Å1.08Å
C15C16sing1.42Å1.39ÅAromatic
C16C17doub1.36Å1.38ÅAromatic
C16H16sing0.94Å1.08Å
C17C18sing1.41Å1.48ÅAromatic
C17H17sing0.95Å1.08Å
C18H18sing0.94Å1.08Å
C19C22sing1.42Å1.41ÅAromatic
C19C26sing1.43Å1.45ÅAromatic
C20C21doub1.40Å1.39ÅAromatic
C20H20sing0.95Å1.08Å
C21H21sing0.95Å1.08Å
C22C23sing1.43Å1.42ÅAromatic
C23C24doub1.35Å1.41ÅAromatic
C23H23sing0.94Å1.08Å
C24C25sing1.43Å1.45ÅAromatic
C24H24sing0.94Å1.08Å
C25C26sing1.42Å1.42ÅAromatic
C27C28doub1.40Å1.43ÅAromatic
C27H27sing0.95Å1.08Å
C28H28sing0.95Å1.08Å
C29C32sing1.42Å1.53ÅAromatic
C29C36sing1.43Å1.48ÅAromatic
C30C31doub1.40Å1.41ÅAromatic
C30H30sing0.95Å1.08Å
C31H31sing0.95Å1.08Å
C32C33sing1.43Å1.47ÅAromatic
C33C34doub1.35Å1.44ÅAromatic
C33H33sing0.94Å1.08Å
C34C35sing1.43Å1.45ÅAromatic
C34H34sing0.94Å1.08Å
C35C36sing1.42Å1.42ÅAromatic
C37C38doub1.40Å1.41ÅAromatic
C37H37sing0.95Å1.08Å
C38H38sing0.95Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N1RUN286.2°83.0°
N1RUN593.3°90.4°
N1RUN890.6°94.1°
N1RUN987.4°92.4°
N1RUN12176.8°176.0°
RUN1C10108.8°111.2°
RUN1C12135.1°131.2°
N2RUN594.0°92.6°
N2RUN8176.7°176.0°
N2RUN989.0°90.4°
N2RUN1295.1°94.2°
RUN2C1108.7°111.3°
RUN2C2133.6°131.2°
N5RUN885.5°84.7°
N5RUN9177.0°176.1°
N5RUN1289.5°92.6°
RUN5C19109.9°107.9°
RUN5C20134.0°134.5°
N8RUN991.6°92.5°
N8RUN1288.2°88.8°
RUN8C26109.0°107.9°
RUN8C28136.2°134.5°
N9RUN1289.7°84.7°
RUN9C29111.2°107.9°
RUN9C30139.4°134.5°
RUN12C36104.4°107.8°
RUN12C38137.8°134.6°
N2C1C5121.0°122.7°
N2C1C10117.9°117.2°
C1N2C2116.9°117.5°
C5C1C10120.7°120.1°
C1C5C4117.9°117.8°
C1C5C6119.2°120.2°
C1C10N1117.5°117.3°
C1C10C8121.3°120.1°
C10N1C12115.3°117.5°
N1C10C8120.3°122.7°
N1C12C11125.4°123.9°
N1C12H12117.3°118.0°
N2C2C3121.9°123.9°
N2C2H2119.0°118.0°
C3C2H2119.1°118.1°
C2C3C4121.9°118.8°
C2C3H3119.0°120.4°
C4C3H3119.0°120.8°
C3C4C5119.6°119.3°
C3C4H4120.2°119.9°
C6N3C15117.5°117.1°
N3C6C5118.0°118.6°
N3C6C7121.9°121.7°
N3C15C13121.0°121.2°
N3C15C16114.4°119.8°
C5C4H4120.2°120.8°
C4C5C6122.9°122.0°
C7N4C13116.9°117.1°
N4C7C6119.9°121.7°
N4C7C8119.3°118.6°
N4C13C14115.5°119.8°
N4C13C15122.4°121.1°
C5C6C7119.9°119.7°
C19N5C20115.9°117.6°
N5C19C22120.8°120.8°
N5C19C26117.2°119.8°
N5C20C21127.0°121.7°
N5C20H20116.4°119.1°
C6C7C8120.6°119.7°
C21N6C22116.4°117.5°
N6C21C20117.4°122.4°
N6C21H21121.3°118.7°
N6C22C19122.4°119.9°
N6C22C23121.2°120.6°
C7C8C9121.3°122.0°
C7C8C10117.9°120.2°
C25N7C27119.9°117.5°
N7C25C24121.1°120.7°
N7C25C26120.2°120.0°
N7C27C28117.6°122.4°
N7C27H27121.2°118.7°
C9C8C10120.8°117.8°
C8C9C11118.3°119.4°
C8C9H9120.9°120.8°
C26N8C28114.8°117.6°
N8C26C19118.5°119.8°
N8C26C25121.4°120.8°
N8C28C27126.0°121.7°
N8C28H28117.0°119.1°
C11C9H9120.8°119.9°
C9C11C12119.2°118.8°
C9C11H11120.4°120.8°
C29N9C30109.1°117.6°
N9C29C32125.0°120.8°
N9C29C36114.5°119.8°
N9C30C31127.3°121.7°
N9C30H30116.3°119.1°
C31N10C32115.4°117.6°
N10C31C30124.8°122.4°
N10C31H31117.6°118.7°
N10C32C29117.2°119.9°
N10C32C33122.6°120.7°
C12C11H11120.4°120.4°
C11C12H12117.3°118.1°
C35N11C37121.8°117.6°
N11C35C34119.2°120.6°
N11C35C36114.4°120.0°
N11C37C38125.9°122.3°
N11C37H37117.0°118.8°
C36N12C38117.6°117.6°
N12C36C29119.9°119.8°
N12C36C35125.1°120.8°
N12C38C37114.8°121.7°
N12C38H38122.6°119.1°
C14C13C15121.9°119.1°
C13C14C18113.5°120.1°
C13C14H14123.2°119.7°
C13C15C16124.5°119.0°
C18C14H14123.3°120.2°
C14C18C17123.1°120.9°
C14C18H18118.4°119.5°
C15C16C17112.9°120.1°
C15C16H16123.6°119.7°
C17C16H16123.6°120.2°
C16C17C18124.0°120.9°
C16C17H17118.0°119.5°
C18C17H17118.0°119.6°
C17C18H18118.5°119.7°
C22C19C26122.0°119.4°
C19C22C23116.4°119.4°
C19C26C25120.1°119.4°
C21C20H20116.5°119.2°
C20C21H21121.3°118.9°
C22C23C24124.0°121.2°
C22C23H23118.0°119.4°
C24C23H23118.0°119.4°
C23C24C25118.7°121.2°
C23C24H24120.6°119.4°
C25C24H24120.6°119.3°
C24C25C26118.7°119.3°
C28C27H27121.2°118.9°
C27C28H28117.0°119.2°
C32C29C36120.4°119.4°
C29C32C33120.1°119.4°
C29C36C35114.8°119.5°
C31C30H30116.3°119.2°
C30C31H31117.6°118.9°
C32C33C34116.9°121.2°
C32C33H33121.6°119.3°
C34C33H33121.6°119.5°
C33C34C35120.7°121.2°
C33C34H34119.7°119.4°
C35C34H34119.6°119.4°
C34C35C36126.2°119.3°
C38C37H37117.0°118.9°
C37C38H38122.6°119.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N1RUN2N593.1°90.1°
N1RUN2N813.1°43.4°
N1RUN2N987.5°92.4°
N1RUN2N12177.1°177.1°
N1RUN5N890.4°94.0°
N1RUN5N9103.9°137.2°
N1RUN5N12178.6°177.4°
N1RUN8N987.4°92.6°
N1RUN8N12177.1°177.2°
N1RUN9N12178.7°177.2°
N1RUN2C12.6°1.3°
RUN1C10C18.2°1.2°
RUN1C10C12171.5°178.9°
N1RUN2C2171.5°179.9°
N1RUN5C1991.7°94.6°
N1RUN5C2093.9°86.0°
RUN1C10C8178.2°178.8°
N1RUN8C2693.8°90.6°
N1RUN8C2885.6°90.0°
N1RUN9C29175.8°179.2°
N1RUN9C302.9°2.9°
RUN1C12C11175.7°178.5°
RUN1C12H124.3°1.4°
N1RUN12C3623.7°45.9°
N1RUN12C38162.5°136.2°
N2RUN5N8176.8°177.1°
N2RUN5N9169.7°139.8°
N2RUN5N1295.0°94.3°
N2RUN8N9100.5°135.8°
N2RUN8N12169.8°139.6°
N2RUN9N1295.1°94.2°
RUN2C1C2171.0°179.0°
RUN2C1C5179.4°178.9°
RUN2C1C108.0°1.1°
N2RUN1C102.9°1.4°
N2RUN1C12172.0°180.0°
RUN2C2C3177.5°178.6°
RUN2C2H22.5°1.3°
N2RUN5C19178.1°177.6°
N2RUN5C207.5°3.0°
N2RUN8C2680.7°47.4°
N2RUN8C2898.7°133.2°
N2RUN9C2997.9°96.2°
N2RUN9C3089.1°85.9°
N2RUN12C3689.1°92.0°
N2RUN12C3884.6°90.1°
N5RUN8N9179.3°177.3°
N5RUN8N1289.6°92.7°
N5RUN9N1274.7°45.6°
N5RUN2C190.5°91.4°
N5RUN1C1096.7°93.9°
N5RUN1C1294.2°87.4°
N5RUN2C278.4°89.8°
RUN5C19C20175.5°179.6°
N5RUN8C260.5°0.5°
N5RUN8C28178.9°180.0°
N5RUN9C2971.8°43.6°
N5RUN9C30101.1°134.3°
N5RUN12C36176.9°175.2°
N5RUN12C389.3°2.7°
RUN5C19C22179.5°179.5°
RUN5C19C261.9°0.4°
RUN5C20C21178.3°179.4°
RUN5C20H201.7°0.6°
N8RUN9N1288.1°88.6°
N8RUN2C110.5°44.8°
N8RUN1C10177.8°178.6°
N8RUN1C128.7°2.7°
N8RUN2C2158.4°136.4°
N8RUN5C191.3°0.5°
N8RUN5C20175.7°180.0°
RUN8C26C28179.5°179.6°
N8RUN9C2985.3°86.6°
N8RUN9C3087.7°91.3°
N8RUN12C3691.4°90.6°
N8RUN12C3894.8°87.3°
RUN8C26C190.5°0.5°
RUN8C26C25178.3°179.5°
RUN8C28C27179.3°179.4°
RUN8C28H280.7°0.6°
N9RUN2C190.0°91.1°
N9RUN1C1086.3°88.7°
N9RUN1C1282.8°89.9°
N9RUN2C2101.1°87.7°
N9RUN5C1912.2°42.6°
N9RUN5C20162.2°136.8°
N9RUN8C26178.8°176.8°
N9RUN8C281.8°2.6°
RUN9C29C30175.2°178.3°
N9RUN12C360.2°2.0°
N9RUN12C38173.6°179.9°
RUN9C29C32179.2°178.3°
RUN9C29C365.1°1.7°
RUN9C30C31176.2°177.7°
RUN9C30H303.8°2.2°
N12RUN2C1179.7°175.8°
N12RUN1C10110.2°45.0°
N12RUN1C1258.9°133.7°
N12RUN2C211.4°3.0°
N12RUN5C1986.9°88.1°
N12RUN5C2087.5°91.4°
N12RUN8C2689.2°92.2°
N12RUN8C2891.4°87.2°
N12RUN9C292.9°2.0°
N12RUN9C30175.8°179.9°
RUN12C36C38175.3°178.3°
RUN12C36C292.8°1.7°
RUN12C36C35177.2°178.3°
RUN12C38C37178.4°177.7°
RUN12C38H381.6°2.3°
N2C1C5C10172.4°180.0°
N2C1C10N111.4°0.1°
C1N2C2C39.3°0.1°
C1N2C2H2170.7°180.0°
N2C1C5C45.0°0.0°
N2C1C5C6174.5°179.9°
N2C1C10C8178.8°180.0°
C5C1C10N1176.0°180.0°
C5C1N2C28.4°0.1°
C1C5C4C32.4°0.0°
C1C5C6N3177.8°180.0°
C1C5C4C6179.5°180.0°
C1C5C4H4177.6°180.0°
C1C5C6C73.5°0.0°
C5C1C10C86.2°0.0°
C1C10N1C8169.9°180.0°
C1C10N1C12179.8°180.0°
C10C1N2C2179.0°179.9°
C10C1C5C4177.3°180.0°
C10C1C5C62.2°0.0°
C1C10C8C74.2°0.0°
C1C10C8C9178.0°180.0°
N1C10C8C7173.8°180.0°
N1C10C8C98.4°0.0°
C10N1C12C117.1°0.0°
C10N1C12H12172.9°179.9°
C12N1C10C810.3°0.0°
N1C12C11C91.5°0.1°
N1C12C11H12180.0°179.9°
N1C12C11H11178.5°180.0°
N2C2C3H2180.0°179.9°
N2C2C3C47.2°0.1°
N2C2C3H3172.8°179.9°
C2C3C4H3180.0°180.0°
C2C3C4C53.3°0.0°
C2C3C4H4176.7°180.0°
H2C2C3C4172.8°180.0°
H2C2C3H37.2°0.0°
C3C4C5H4180.0°180.0°
C3C4C5C6177.1°180.0°
H3C3C4C5176.7°180.0°
H3C3C4H43.3°0.0°
N3C6C5C42.7°0.0°
N3C6C7N44.8°0.0°
N3C6C5C7174.3°180.0°
N3C6C7C8179.5°180.0°
C6N3C15C133.1°0.0°
C6N3C15C16178.6°180.0°
N3C15C13N46.7°0.1°
C15N3C6C5176.6°180.0°
C15N3C6C72.4°0.0°
N3C15C13C14178.8°180.0°
N3C15C13C16175.1°180.0°
N3C15C16C17177.1°179.9°
N3C15C16H162.9°0.0°
C4C5C6C7177.0°180.0°
H4C4C5C62.9°0.0°
N4C7C6C5178.9°180.0°
N4C7C6C8175.7°180.0°
N4C7C8C90.5°0.0°
N4C7C8C10177.2°180.0°
C7N4C13C14178.9°180.0°
C7N4C13C154.1°0.1°
C13N4C7C61.3°0.0°
C13N4C7C8177.0°180.0°
N4C13C14C15174.8°180.0°
N4C13C14C18176.7°180.0°
N4C13C14H143.3°0.1°
N4C13C15C16178.2°180.0°
C5C6C7C85.4°0.0°
N5C19C22N62.1°0.0°
N5C19C26N81.7°0.0°
N5C19C22C26178.5°179.9°
C19N5C20C214.2°0.0°
C19N5C20H20175.8°180.0°
N5C19C22C23179.6°180.0°
N5C19C26C25179.6°180.0°
N5C20C21N62.1°0.1°
C20N5C19C224.0°0.0°
C20N5C19C26177.4°180.0°
N5C20C21H20180.0°179.9°
N5C20C21H21177.9°180.0°
C6C7C8C9176.3°180.0°
C6C7C8C101.5°0.0°
C21N6C22C190.0°0.0°
N6C21C20H21180.0°179.9°
N6C21C20H20177.9°180.0°
C21N6C22C23178.2°180.0°
N6C22C19C23178.3°180.0°
N6C22C19C26179.3°180.0°
C22N6C21C200.1°0.1°
C22N6C21H21179.9°180.0°
N6C22C23C24180.0°180.0°
N6C22C23H230.0°0.1°
C7C8C9C10177.7°180.0°
C7C8C9C11179.9°180.0°
C7C8C9H90.1°0.0°
N7C25C26N81.6°0.0°
N7C25C26C19179.5°180.0°
N7C25C24C23178.9°180.0°
N7C25C24C26177.5°180.0°
N7C25C24H241.1°0.1°
C25N7C27C280.7°0.0°
C25N7C27H27179.3°180.0°
N7C27C28N80.0°0.0°
C27N7C25C24177.6°180.0°
C27N7C25C260.1°0.0°
N7C27C28H27180.0°180.0°
N7C27C28H28180.0°180.0°
C8C9C11H9180.0°180.0°
C8C9C11C121.1°0.1°
C8C9C11H11178.9°180.0°
C10C8C9C112.4°0.0°
C10C8C9H9177.6°180.0°
N8C26C19C22179.7°180.0°
N8C26C19C25177.9°180.0°
N8C26C25C24179.1°180.0°
C26N8C28C271.4°0.0°
C26N8C28H28178.6°180.0°
C28N8C26C19180.0°180.0°
C28N8C26C252.1°0.0°
N8C28C27H28180.0°180.0°
N8C28C27H27180.0°180.0°
C9C11C12H11180.0°179.9°
C9C11C12H12178.5°180.0°
H9C9C11C12178.9°180.0°
H9C9C11H111.0°0.1°
N9C29C32N100.5°0.0°
N9C29C36N125.4°0.0°
N9C29C32C36175.5°180.0°
C29N9C30C3110.7°0.1°
C29N9C30H30169.3°180.0°
N9C29C32C33177.4°180.0°
N9C29C36C35179.6°180.0°
N9C30C31N1014.7°0.1°
C30N9C29C324.1°0.0°
C30N9C29C36179.8°180.0°
N9C30C31H30180.0°179.9°
N9C30C31H31165.4°180.0°
C31N10C32C292.5°0.0°
N10C31C30H31180.0°179.9°
N10C31C30H30165.3°180.0°
C31N10C32C33179.3°180.0°
N10C32C29C33176.9°180.0°
N10C32C29C36175.9°180.0°
C32N10C31C308.9°0.0°
C32N10C31H31171.1°180.0°
N10C32C33C34173.0°179.9°
N10C32C33H336.9°0.0°
H11C11C12H121.5°0.1°
N11C35C36N126.1°0.0°
N11C35C36C29179.2°180.0°
N11C35C34C33177.3°180.0°
N11C35C34C36174.9°180.0°
N11C35C34H342.7°0.1°
C35N11C37C381.7°0.0°
C35N11C37H37178.2°180.0°
N11C37C38N122.8°0.0°
C37N11C35C34178.5°180.0°
C37N11C35C363.1°0.0°
N11C37C38H37180.0°180.0°
N11C37C38H38177.2°180.0°
N12C36C29C32178.7°180.0°
N12C36C29C35175.0°180.0°
N12C36C35C34178.8°180.0°
C36N12C38C375.3°0.0°
C36N12C38H38174.8°180.0°
C38N12C36C29178.1°180.0°
C38N12C36C357.5°0.0°
N12C38C37H38180.0°180.0°
N12C38C37H37177.2°180.0°
C13C14C18H14180.0°180.0°
C14C13C15C163.7°0.0°
C13C14C18C171.5°0.0°
C13C14C18H18178.5°180.0°
C15C13C14C181.8°0.0°
C15C13C14H14178.1°180.0°
C13C15C16C171.8°0.1°
C13C15C16H16178.2°180.0°
C14C18C17C163.5°0.0°
C14C18C17H18180.0°180.0°
C14C18C17H17176.5°180.0°
H14C14C18C17178.6°180.0°
H14C14C18H181.4°0.0°
C15C16C17H16180.0°180.0°
C15C16C17C181.7°0.1°
C15C16C17H17178.4°180.0°
C16C17C18H17180.0°179.9°
C16C17C18H18176.5°180.0°
H16C16C17C18178.3°180.0°
H16C16C17H171.6°0.1°
H17C17C18H183.5°0.1°
C19C22C23C241.7°0.0°
C19C22C23H23178.3°179.9°
C22C19C26C251.8°0.0°
C26C19C22C231.0°0.0°
C19C26C25C243.1°0.0°
H20C20C21H212.1°0.1°
C22C23C24H23180.0°179.9°
C22C23C24C253.0°0.1°
C22C23C24H24177.0°180.0°
C23C24C25H24180.0°179.9°
C23C24C25C263.6°0.0°
H23C23C24C25177.0°180.0°
H23C23C24H243.0°0.1°
H24C24C25C26176.4°180.0°
H27C27C28H280.0°0.0°
C29C32C33C3410.3°0.0°
C29C32C33H33169.8°180.0°
C32C29C36C353.7°0.0°
C36C29C32C337.2°0.0°
C29C36C35C344.1°0.0°
H30C30C31H3114.7°0.1°
C32C33C34H33180.0°179.9°
C32C33C34C3510.5°0.0°
C32C33C34H34169.6°180.0°
C33C34C35H34180.0°179.9°
C33C34C35C367.8°0.0°
H33C33C34C35169.6°180.0°
H33C33C34H3410.4°0.1°
H34C34C35C36172.2°180.0°
H37C37C38H382.8°0.1°

258222

PDB entries from 2026-08-19

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