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SummaryGeometryRelated PDB entries

RJY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C10C09sing1.51Å1.52Å
C09S08sing1.71Å1.62ÅAromatic
C09N11doub1.29Å1.39ÅAromatic
S08C07sing1.71Å1.59ÅAromatic
N11C06sing1.34Å1.48ÅAromatic
C07C06doub1.35Å1.42ÅAromatic
C06C02sing1.47Å1.53Å
C04O03sing1.45Å1.40Å
C04C05sing1.53Å1.53Å
O03C02sing1.35Å1.40Å
C02O01doub1.22Å1.18Å
C10H1sing1.09Å1.10Å
C10H2sing1.09Å1.10Å
C10H3sing1.09Å1.10Å
C04H4sing1.09Å1.10Å
C04H5sing1.09Å1.10Å
C05H6sing1.09Å1.10Å
C05H7sing1.09Å1.10Å
C05H8sing1.09Å1.10Å
C07H9sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C10C09S08123.9°124.7°
C10C09N11125.7°124.7°
C09C10H1109.5°109.5°
C09C10H2109.5°109.5°
C09C10H3109.5°109.4°
S08C09N11110.3°110.6°
C09S08C0799.5°91.1°
C09N11C06110.2°115.8°
S08C07C06109.5°108.8°
S08C07H9125.2°125.6°
N11C06C07110.4°113.7°
N11C06C02126.2°123.1°
C07C06C02123.4°123.1°
C06C07H9125.2°125.6°
C06C02O03121.7°120.0°
C06C02O01118.5°120.0°
O03C04C05113.0°109.4°
C04O03C02119.1°117.0°
O03C04H4108.6°109.5°
O03C04H5108.6°109.5°
C05C04H4108.6°109.5°
C05C04H5108.6°109.4°
C04C05H6109.5°109.5°
C04C05H7109.5°109.5°
C04C05H8109.5°109.4°
O03C02O01119.8°120.0°
H1C10H2109.5°109.5°
H1C10H3109.4°109.5°
H2C10H3109.5°109.4°
H4C04H5109.5°109.5°
H6C05H7109.5°109.5°
H6C05H8109.5°109.5°
H7C05H8109.4°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C10C09S08N11179.8°179.7°
C10C09S08C07179.6°180.0°
C10C09N11C06179.7°179.8°
C09C10H1H2120.0°120.0°
C09C10H1H3120.0°120.0°
C09C10H2H3120.0°119.9°
S08C09N11C060.1°0.5°
C09S08C07C060.2°0.0°
S08C09C10H10.0°0.0°
S08C09C10H2120.0°120.0°
S08C09C10H3120.0°120.1°
C09S08C07H9179.7°180.0°
N11C09S08C070.2°0.3°
C09N11C06C070.1°0.4°
C09N11C06C02179.6°179.8°
N11C09C10H1179.8°179.7°
N11C09C10H260.2°59.7°
N11C09C10H359.8°60.2°
S08C07C06N110.2°0.2°
S08C07C06H9180.0°180.0°
S08C07C06C02179.7°179.9°
N11C06C07C02179.5°179.7°
N11C06C02O0365.3°0.4°
N11C06C02O01116.3°179.7°
N11C06C07H9179.8°179.8°
C07C06C02O03115.3°180.0°
C07C06C02O0163.2°0.0°
C06C02O03C0487.7°180.0°
C06C02O03O01178.4°179.9°
C02C06C07H90.2°0.0°
O03C04C05H4120.5°120.0°
O03C04C05H5120.5°120.0°
C04O03C02O0193.9°0.1°
O03C04H4H5118.4°120.0°
O03C04C05H6180.0°60.0°
O03C04C05H760.0°60.1°
O03C04C05H860.0°180.0°
C05C04O03C027.6°180.0°
C05C04H4H5118.4°120.0°
C04C05H6H7120.0°120.1°
C04C05H6H8120.0°120.0°
C04C05H7H8120.0°119.9°
C02O03C04H4128.2°60.0°
C02O03C04H5112.9°60.1°
H1C10H2H3119.9°120.0°
H4C04C05H659.5°180.0°
H4C04C05H7179.5°59.9°
H4C04C05H860.5°60.0°
H5C04C05H659.5°60.0°
H5C04C05H760.6°180.0°
H5C04C05H8179.5°60.1°
H6C05H7H8120.0°120.0°

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PDB entries from 2024-07-17

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