Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

RIA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.48Å1.49Å
POP2sing1.61Å1.46Å
POP3sing1.61Å1.62Å
PO5Asing1.61Å1.61Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
O5AC5Asing1.43Å1.46Å
C5AC4Asing1.53Å1.52Å
C5AH5'sing1.09Å1.12Å
C5AH5''sing1.09Å1.11Å
C4AO4'sing1.44Å1.40Å
C4AC3Asing1.55Å1.53Å
C4AH4Asing1.09Å1.11Å
O4'C1Asing1.44Å1.44Å
C3AO3Asing1.43Å1.42Å
C3AC2Asing1.55Å1.53Å
C3AH3Asing1.09Å1.12Å
O3AHO3Asing0.97Å0.95Å
C2AO2Asing1.43Å1.42Å
C2AC1Asing1.54Å1.51Å
C2AH2Asing1.09Å1.12Å
O2AC1'sing1.43Å1.39Å
C1AN9sing1.46Å1.48Å
C1AH1Asing1.09Å1.11Å
N9C8sing1.36Å1.37ÅAromatic
N9C4sing1.37Å1.36ÅAromatic
C8N7doub1.30Å1.32ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.38ÅAromatic
C5C6sing1.41Å1.41ÅAromatic
C5C4doub1.41Å1.36ÅAromatic
C6N6sing1.38Å1.34Å
C6N1doub1.33Å1.36ÅAromatic
N6HN61sing0.97Å1.02Å
N6HN62sing0.97Å1.02Å
N1C2sing1.32Å1.37ÅAromatic
C2N3doub1.32Å1.33ÅAromatic
C2H2sing1.08Å1.10Å
N3C4sing1.33Å1.34ÅAromatic
C1'O1'sing1.44Å1.39Å
C1'C2'sing1.54Å1.54Å
C1'H1'sing1.09Å1.11Å
O1'C4'sing1.44Å1.42Å
C2'O2'sing1.43Å1.42Å
C2'C3'sing1.55Å1.52Å
C2'H2'sing1.09Å1.12Å
O2'HO2'sing0.97Å0.95Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.52Å
C3'H3'sing1.09Å1.12Å
O3'HO3'sing0.97Å0.95Å
C4'C5'sing1.53Å1.48Å
C4'H4'sing1.09Å1.11Å
C5'O5'sing1.43Å1.39Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.11Å
O5'P'sing1.61Å1.56Å
P'O1Xdoub1.48Å1.48Å
P'O2Xsing1.61Å1.49Å
P'O3Xsing1.61Å1.40Å
O2XHO'2sing0.97Å0.95Å
O3XHO'3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2111.4°109.5°
OP1POP3105.8°109.5°
OP1PO5A113.8°109.5°
OP2POP3109.6°109.5°
OP2PO5A115.9°109.4°
POP2HOP2111.5°106.8°
OP3PO5A99.0°109.5°
POP3HOP3105.8°106.9°
PO5AC5A109.4°106.8°
O5AC5AC4A104.9°109.5°
O5AC5AH5'113.9°109.5°
O5AC5AH5''113.9°109.5°
C4AC5AH5'113.9°109.5°
C4AC5AH5''114.0°109.4°
C5AC4AO4'108.3°110.4°
C5AC4AC3A114.9°110.5°
C5AC4AH4A104.7°110.3°
H5'C5AH5''96.5°109.5°
O4'C4AC3A103.0°104.8°
O4'C4AH4A116.4°110.4°
C4AO4'C1A111.3°105.3°
C3AC4AH4A109.9°110.4°
C4AC3AO3A113.2°110.5°
C4AC3AC2A101.4°104.1°
C4AC3AH3A113.4°110.5°
O4'C1AC2A106.1°104.9°
O4'C1AN9109.0°110.4°
O4'C1AH1A111.4°110.4°
O3AC3AC2A112.3°110.5°
O3AC3AH3A102.7°110.5°
C3AO3AHO3A113.2°106.8°
C2AC3AH3A114.4°110.6°
C3AC2AO2A105.1°110.5°
C3AC2AC1A101.6°104.0°
C3AC2AH2A117.5°110.5°
O2AC2AC1A111.2°110.8°
O2AC2AH2A108.9°110.4°
C2AO2AC1'130.1°106.8°
C1AC2AH2A112.1°110.4°
C2AC1AN9107.8°110.4°
C2AC1AH1A112.5°110.4°
O2AC1'O1'102.1°110.3°
O2AC1'C2'94.2°110.3°
O2AC1'H1'122.3°110.3°
N9C1AH1A109.8°110.3°
C1AN9C8128.2°126.3°
C1AN9C4125.7°126.2°
C8N9C4106.1°107.4°
N9C8N7113.0°110.0°
N9C8H8125.0°125.0°
N9C4C5106.0°106.0°
N9C4N3125.4°135.0°
N7C8H8122.0°125.0°
C8N7C5103.3°109.4°
N7C5C6131.3°134.7°
N7C5C4111.5°107.1°
C6C5C4117.2°118.2°
C5C6N6124.2°120.7°
C5C6N1116.8°118.5°
C5C4N3128.6°119.0°
N6C6N1119.0°120.8°
C6N6HN61124.2°119.9°
C6N6HN62107.0°120.0°
C6N1C2119.3°121.2°
HN61N6HN62106.9°120.1°
N1C2N3127.1°122.5°
N1C2H2118.1°118.8°
N3C2H2114.8°118.7°
C2N3C4111.1°120.6°
O1'C1'C2'108.5°104.9°
O1'C1'H1'110.6°110.4°
C1'O1'C4'108.7°105.3°
C2'C1'H1'117.1°110.4°
C1'C2'O2'107.4°110.8°
C1'C2'C3'100.1°104.0°
C1'C2'H2'116.7°110.4°
O1'C4'C3'106.3°104.8°
O1'C4'C5'102.7°110.4°
O1'C4'H4'118.3°110.4°
O2'C2'C3'110.2°110.5°
O2'C2'H2'107.8°110.5°
C2'O2'HO2'107.4°106.8°
C3'C2'H2'114.2°110.5°
C2'C3'O3'116.2°110.5°
C2'C3'C4'100.7°104.1°
C2'C3'H3'111.7°110.6°
O3'C3'C4'111.3°110.5°
O3'C3'H3'101.2°110.4°
C3'O3'HO3'116.2°106.8°
C4'C3'H3'116.6°110.5°
C3'C4'C5'116.5°110.5°
C3'C4'H4'105.1°110.4°
C5'C4'H4'108.5°110.4°
C4'C5'O5'112.4°109.5°
C4'C5'H5'1111.1°109.5°
C4'C5'H5'2111.1°109.5°
O5'C5'H5'1111.2°109.5°
O5'C5'H5'2111.2°109.4°
C5'O5'P'112.0°106.8°
H5'1C5'H5'299.2°109.5°
O5'P'O1X122.5°109.5°
O5'P'O2X98.6°109.5°
O5'P'O3X114.1°109.5°
O1XP'O2X111.0°109.5°
O1XP'O3X103.3°109.4°
O2XP'O3X106.6°109.5°
P'O2XHO'298.6°106.8°
P'O3XHO'3114.1°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2OP3116.8°120.0°
OP1POP2O5A132.3°120.0°
OP1POP3O5A118.0°120.0°
OP1POP2HOP2180.0°60.0°
OP1POP3HOP3179.9°180.0°
OP1PO5AC5A32.8°60.0°
OP2POP3O5A121.7°119.9°
OP2POP3HOP359.7°59.9°
OP2PO5AC5A163.9°180.0°
OP3POP2HOP263.2°60.0°
OP3PO5AC5A79.0°60.1°
O5APOP2HOP247.7°180.0°
O5APOP3HOP362.1°60.0°
PO5AC5AC4A177.1°180.0°
PO5AC5AH5'51.8°60.1°
PO5AC5AH5''57.6°60.0°
O5AC5AC4AH5'125.2°120.0°
O5AC5AC4AH5''125.3°120.0°
O5AC5AH5'H5''119.8°120.0°
O5AC5AC4AO4'53.9°61.5°
O5AC5AC4AC3A60.6°176.9°
O5AC5AC4AH4A178.7°60.8°
C4AC5AH5'H5''119.9°120.0°
C5AC4AO4'C3A122.1°119.0°
C5AC4AO4'H4A117.6°122.2°
C5AC4AC3AH4A117.8°122.2°
C5AC4AO4'C1A147.2°159.5°
C5AC4AC3AO3A83.1°98.3°
C5AC4AC3AC2A156.5°143.0°
C5AC4AC3AH3A33.4°24.3°
H5'C5AC4AO4'179.2°178.5°
H5'C5AC4AC3A64.7°63.1°
H5'C5AC4AH4A56.0°59.2°
H5''C5AC4AO4'71.4°58.5°
H5''C5AC4AC3A174.1°56.9°
H5''C5AC4AH4A53.4°179.2°
O4'C4AC3AH4A124.6°118.8°
O4'C4AC3AO3A159.4°142.7°
O4'C4AC3AC2A38.9°24.1°
O4'C4AC3AH3A84.2°94.6°
C4AO4'C1AC2A0.5°40.5°
C4AO4'C1AN9116.4°159.3°
C4AO4'C1AH1A122.3°78.4°
C3AC4AO4'C1A25.0°40.5°
C4AC3AO3AC2A114.1°114.6°
C4AC3AO3AH3A122.6°122.6°
C4AC3AC2AH3A122.4°118.7°
C4AC3AO3AHO3A180.0°61.5°
C4AC3AC2AO2A78.1°118.8°
C4AC3AC2AC1A37.9°0.1°
C4AC3AC2AH2A160.6°118.7°
H4AC4AO4'C1A95.2°78.3°
H4AC4AC3AO3A34.7°23.9°
H4AC4AC3AC2A85.7°94.8°
H4AC4AC3AH3A151.2°146.5°
O4'C1AC2AC3A24.1°23.8°
O4'C1AC2AO2A87.3°142.6°
O4'C1AC2AN9116.7°118.9°
O4'C1AC2AH1A122.0°118.9°
O4'C1AC2AH2A150.4°94.7°
O4'C1AN9H1A122.3°122.3°
O4'C1AN9C818.3°27.0°
O4'C1AN9C4162.0°152.9°
O3AC3AC2AH3A116.5°122.7°
O3AC3AC2AO2A43.0°0.1°
O3AC3AC2AC1A159.0°118.8°
O3AC3AC2AH2A78.3°122.7°
C2AC3AO3AHO3A66.0°176.1°
C3AC2AO2AC1A109.1°114.7°
C3AC2AO2AH2A126.8°122.6°
C3AC2AC1AH2A126.3°118.6°
C3AC2AO2AC1'145.1°91.4°
C3AC2AC1AN992.6°142.7°
C3AC2AC1AH1A146.1°95.1°
H3AC3AO3AHO3A57.3°61.2°
H3AC3AC2AO2A159.5°122.5°
H3AC3AC2AC1A84.5°118.5°
H3AC3AC2AH2A38.2°0.0°
O2AC2AC1AH2A122.2°122.7°
O2AC2AC1AN9156.0°98.5°
O2AC2AC1AH1A34.7°23.7°
C2AO2AC1'O1'80.8°63.0°
C2AO2AC1'C2'169.2°178.5°
C2AO2AC1'H1'43.4°59.3°
C1AC2AO2AC1'105.7°153.9°
C2AC1AN9H1A122.9°122.2°
C2AC1AN9C896.5°88.5°
C2AC1AN9C483.2°91.6°
H2AC2AO2AC1'18.4°31.2°
H2AC2AC1AN933.7°24.1°
H2AC2AC1AH1A87.5°146.4°
O2AC1'O1'C2'98.6°118.8°
O2AC1'O1'H1'131.7°122.2°
O2AC1'C2'H1'129.7°122.2°
O2AC1'O1'C4'92.2°159.3°
O2AC1'C2'O2'169.2°98.6°
O2AC1'C2'C3'75.7°142.7°
O2AC1'C2'H2'48.1°24.2°
C1AN9C8C4179.7°179.9°
C1AN9C8N7179.6°180.0°
C1AN9C8H80.4°0.1°
C1AN9C4C5179.2°179.8°
C1AN9C4N30.6°0.0°
H1AC1AN9C8140.6°149.3°
H1AC1AN9C439.7°30.6°
N9C8N7H8180.0°180.0°
N9C8N7C50.3°0.2°
C8N9C4C50.5°0.3°
C8N9C4N3179.6°180.0°
C4N9C8N70.1°0.0°
C4N9C8H8179.9°180.0°
N9C4C5N70.7°0.4°
N9C4C5C6179.7°179.7°
N9C4C5N3179.9°179.8°
N9C4N3C2179.5°180.0°
C8N7C5C6179.4°179.5°
C8N7C5C40.7°0.4°
H8C8N7C5179.6°179.7°
N7C5C6C4178.7°179.0°
N7C5C6N60.7°0.7°
N7C5C6N1179.2°179.5°
N7C5C4N3179.4°179.8°
C5C6N6N1179.9°179.8°
C5C6N6HN61180.0°179.7°
C5C6N6HN6254.7°0.5°
C5C6N1C20.1°0.2°
C6C5C4N30.4°0.5°
C4C5C6N6179.4°179.7°
C4C5C6N10.5°0.5°
C5C4N3C20.3°0.2°
C6N6HN61HN62125.3°179.7°
N6C6N1C2180.0°180.0°
N1C6N6HN610.2°0.1°
N1C6N6HN62125.4°179.7°
C6N1C2N31.0°0.2°
C6N1C2H2179.0°180.0°
N1C2N3H2180.0°179.9°
N1C2N3C41.0°0.1°
H2C2N3C4179.0°180.0°
O1'C1'C2'H1'126.0°119.0°
O1'C1'C2'O2'86.5°142.6°
O1'C1'C2'C3'28.6°23.9°
O1'C1'C2'H2'152.4°94.7°
C1'O1'C4'C3'18.8°40.5°
C1'O1'C4'C5'141.6°159.5°
C1'O1'C4'H4'98.9°78.3°
C2'C1'O1'C4'6.5°40.5°
C1'C2'O2'C3'108.2°114.7°
C1'C2'O2'H2'126.6°122.7°
C1'C2'C3'H2'125.6°118.5°
C1'C2'O2'HO2'179.9°65.3°
C1'C2'C3'O3'157.6°118.8°
C1'C2'C3'C4'37.3°0.1°
C1'C2'C3'H3'87.0°118.6°
H1'C1'O1'C4'136.2°78.4°
H1'C1'C2'O2'39.5°23.6°
H1'C1'C2'C3'154.6°95.1°
H1'C1'C2'H2'81.5°146.4°
O1'C4'C3'C2'36.1°24.1°
O1'C4'C3'O3'159.8°142.8°
O1'C4'C3'C5'113.7°118.9°
O1'C4'C3'H4'126.2°118.8°
O1'C4'C3'H3'84.9°94.7°
O1'C4'C5'H4'126.0°122.3°
O1'C4'C5'O5'178.6°61.5°
O1'C4'C5'H5'156.1°178.5°
O1'C4'C5'H5'253.4°58.5°
O2'C2'C3'H2'121.5°122.6°
O2'C2'C3'O3'44.7°0.1°
O2'C2'C3'C4'75.6°118.8°
O2'C2'C3'H3'160.0°122.5°
C3'C2'O2'HO2'71.8°180.0°
C2'C3'O3'C4'114.4°114.7°
C2'C3'O3'H3'121.1°122.8°
C2'C3'C4'H3'121.0°118.8°
C2'C3'O3'HO3'180.0°65.3°
C2'C3'C4'C5'149.8°142.9°
C2'C3'C4'H4'90.1°94.7°
H2'C2'O2'HO2'53.4°57.4°
H2'C2'C3'O3'76.8°122.7°
H2'C2'C3'C4'162.9°118.6°
H2'C2'C3'H3'38.5°0.1°
O3'C3'C4'H3'115.3°122.5°
O3'C3'C4'C5'86.5°98.4°
O3'C3'C4'H4'33.6°24.0°
C4'C3'O3'HO3'65.7°180.0°
C3'C4'C5'H4'118.2°122.3°
C3'C4'C5'O5'65.6°176.9°
C3'C4'C5'H5'159.6°63.1°
C3'C4'C5'H5'2169.1°56.9°
H3'C3'O3'HO3'58.8°57.4°
H3'C3'C4'C5'28.8°24.2°
H3'C3'C4'H4'148.9°146.5°
C4'C5'O5'H5'1125.2°120.0°
C4'C5'O5'H5'2125.2°120.0°
C4'C5'H5'1H5'2117.0°120.0°
C4'C5'O5'P'174.1°180.0°
H4'C4'C5'O5'52.6°60.8°
H4'C4'C5'H5'1177.9°59.2°
H4'C4'C5'H5'272.7°179.2°
O5'C5'H5'1H5'2117.1°120.0°
C5'O5'P'O1X132.9°60.0°
C5'O5'P'O2X11.2°180.0°
C5'O5'P'O3X101.4°60.0°
H5'1C5'O5'P'48.9°60.0°
H5'2C5'O5'P'60.7°60.0°
O5'P'O1XO2X115.7°120.0°
O5'P'O1XO3X130.4°120.0°
O5'P'O2XO3X118.4°120.0°
O5'P'O2XHO'2180.0°180.0°
O5'P'O3XHO'3180.0°60.0°
O1XP'O2XO3X111.8°119.9°
O1XP'O2XHO'250.3°60.0°
O1XP'O3XHO'344.7°180.0°
O2XP'O3XHO'372.3°60.0°
O3XP'O2XHO'261.5°60.0°

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon