RFJ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
S	P	doub	1.86Å	0.00Å
OP2	P	sing	1.61Å	0.00Å
P	O5'	sing	1.61Å	0.00Å
O3'	C3'	sing	1.43Å	0.00Å
C5'	O5'	sing	1.43Å	0.00Å
C5'	C4'	sing	1.53Å	0.00Å
C3'	C4'	sing	1.54Å	0.00Å
C3'	C2'	sing	1.55Å	0.00Å
C4'	O4'	sing	1.44Å	0.00Å
C2'	O2'	sing	1.43Å	0.00Å
C2'	C1'	sing	1.55Å	0.00Å
O4'	C1'	sing	1.44Å	0.00Å
C8	N7	doub	1.30Å	0.00Å	Aromatic
C8	N9	sing	1.37Å	0.00Å	Aromatic
O2'	C	sing	1.43Å	0.00Å
N7	C5	sing	1.36Å	0.00Å	Aromatic
C1'	N9	sing	1.47Å	0.00Å
N9	C4	sing	1.37Å	0.00Å	Aromatic
C5	C4	doub	1.40Å	0.00Å	Aromatic
C5	C6	sing	1.41Å	0.00Å
C4	N3	sing	1.34Å	0.00Å
O6	C6	doub	1.22Å	0.00Å
C6	N1	sing	1.35Å	0.00Å
N3	C2	doub	1.31Å	0.00Å
N1	C2	sing	1.36Å	0.00Å
C2	N2	sing	1.37Å	0.00Å
C	H1	sing	1.09Å	0.00Å
C	H2	sing	1.09Å	0.00Å
C	H3	sing	1.09Å	0.00Å
C1'	H4	sing	1.09Å	0.00Å
C2'	H5	sing	1.09Å	0.00Å
C3'	H6	sing	1.09Å	0.00Å
C4'	H7	sing	1.09Å	0.00Å
C5'	H8	sing	1.09Å	0.00Å
C5'	H9	sing	1.09Å	0.00Å
C8	H10	sing	1.08Å	0.00Å
N1	H11	sing	0.97Å	0.00Å
N2	H12	sing	0.97Å	0.00Å
N2	H13	sing	0.97Å	0.00Å
O3'	HO3'	sing	0.97Å	0.00Å
OP2	HOP2	sing	0.97Å	0.00Å
P	OP3	sing	1.61Å	0.00Å
OP3	HOP3	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S	P	OP2	90.0°	109.5°
S	P	O5'	90.0°	109.5°
S	P	OP3	90.0°	109.5°
OP2	P	O5'	90.0°	109.4°
P	OP2	HOP2	90.0°	113.9°
OP2	P	OP3	90.0°	109.5°
P	O5'	C5'	90.0°	123.0°
O5'	P	OP3	90.0°	109.5°
O3'	C3'	C4'	90.0°	110.5°
O3'	C3'	C2'	90.0°	110.6°
O3'	C3'	H6	90.0°	110.5°
C3'	O3'	HO3'	90.0°	114.0°
O5'	C5'	C4'	90.0°	109.5°
O5'	C5'	H8	90.0°	109.5°
O5'	C5'	H9	90.0°	109.5°
C5'	C4'	C3'	90.0°	109.9°
C5'	C4'	O4'	90.0°	109.9°
C5'	C4'	H7	90.0°	110.0°
C4'	C5'	H8	90.0°	109.5°
C4'	C5'	H9	90.0°	109.5°
C4'	C3'	C2'	90.0°	104.2°
C3'	C4'	O4'	90.0°	107.4°
C4'	C3'	H6	90.0°	110.5°
C3'	C4'	H7	90.0°	109.9°
C3'	C2'	O2'	90.0°	110.9°
C3'	C2'	C1'	90.0°	102.1°
C3'	C2'	H5	90.0°	110.9°
C2'	C3'	H6	90.0°	110.3°
C4'	O4'	C1'	90.0°	106.9°
O4'	C4'	H7	90.0°	109.7°
O2'	C2'	C1'	90.0°	110.9°
C2'	O2'	C	90.0°	114.0°
O2'	C2'	H5	90.0°	110.8°
C2'	C1'	O4'	90.0°	103.7°
C2'	C1'	N9	90.0°	110.6°
C2'	C1'	H4	90.0°	110.6°
C1'	C2'	H5	90.0°	110.9°
O4'	C1'	N9	90.0°	110.7°
O4'	C1'	H4	90.0°	110.6°
N7	C8	N9	90.0°	109.8°
C8	N7	C5	90.0°	109.3°
N7	C8	H10	90.0°	125.1°
C8	N9	C1'	90.0°	126.2°
C8	N9	C4	90.0°	107.5°
N9	C8	H10	90.0°	125.1°
O2'	C	H1	90.0°	109.5°
O2'	C	H2	90.0°	109.5°
O2'	C	H3	90.0°	109.5°
N7	C5	C4	90.0°	107.2°
N7	C5	C6	90.0°	134.1°
C1'	N9	C4	90.0°	126.3°
N9	C1'	H4	90.0°	110.5°
N9	C4	C5	90.0°	106.1°
N9	C4	N3	90.0°	134.2°
C4	C5	C6	90.0°	118.6°
C5	C4	N3	90.0°	119.7°
C5	C6	O6	90.0°	120.9°
C5	C6	N1	90.0°	118.4°
C4	N3	C2	90.0°	121.1°
O6	C6	N1	90.0°	120.8°
C6	N1	C2	90.0°	120.3°
C6	N1	H11	90.0°	119.9°
N3	C2	N1	90.0°	121.9°
N3	C2	N2	90.0°	119.0°
N1	C2	N2	90.0°	119.1°
C2	N1	H11	90.0°	119.8°
C2	N2	H12	90.0°	120.0°
C2	N2	H13	90.0°	120.0°
H1	C	H2	90.0°	109.5°
H1	C	H3	90.0°	109.5°
H2	C	H3	90.0°	109.4°
H8	C5'	H9	90.0°	109.4°
H12	N2	H13	90.0°	120.0°
P	OP3	HOP3	90.0°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S	P	OP2	O5'	90.0°	120.0°
S	P	OP2	OP3	90.0°	120.0°
S	P	O5'	OP3	90.0°	120.0°
S	P	O5'	C5'	90.0°	45.0°
S	P	OP2	HOP2	90.0°	60.0°
S	P	OP3	HOP3	90.0°	180.0°
OP2	P	O5'	OP3	90.0°	120.0°
OP2	P	O5'	C5'	90.0°	165.0°
OP2	P	OP3	HOP3	90.0°	59.9°
P	O5'	C5'	C4'	90.0°	180.0°
P	O5'	C5'	H8	90.0°	60.0°
P	O5'	C5'	H9	90.0°	60.0°
O5'	P	OP2	HOP2	90.0°	180.0°
O5'	P	OP3	HOP3	90.0°	60.0°
O3'	C3'	C4'	C5'	90.0°	119.7°
O3'	C3'	C4'	C2'	90.0°	118.8°
O3'	C3'	C4'	H6	90.0°	122.7°
O3'	C3'	C2'	H6	90.0°	122.6°
O3'	C3'	C4'	O4'	90.0°	120.7°
O3'	C3'	C2'	O2'	90.0°	20.3°
O3'	C3'	C2'	C1'	90.0°	97.9°
O3'	C3'	C2'	H5	90.0°	143.9°
O3'	C3'	C4'	H7	90.0°	1.4°
O5'	C5'	C4'	H8	90.0°	120.0°
O5'	C5'	C4'	H9	90.0°	120.0°
O5'	C5'	C4'	C3'	90.0°	175.0°
O5'	C5'	C4'	O4'	90.0°	67.0°
O5'	C5'	C4'	H7	90.0°	53.9°
O5'	C5'	H8	H9	90.0°	120.0°
C5'	O5'	P	OP3	90.0°	75.0°
C5'	C4'	C3'	O4'	90.0°	119.6°
C5'	C4'	C3'	H7	90.0°	121.1°
C5'	C4'	C3'	C2'	90.0°	121.4°
C5'	C4'	O4'	H7	90.0°	121.1°
C5'	C4'	O4'	C1'	90.0°	145.8°
C5'	C4'	C3'	H6	90.0°	3.0°
C4'	C5'	H8	H9	90.0°	120.0°
C4'	C3'	C2'	H6	90.0°	118.6°
C3'	C4'	O4'	H7	90.0°	119.4°
C4'	C3'	C2'	O2'	90.0°	139.0°
C4'	C3'	C2'	C1'	90.0°	20.9°
C3'	C4'	O4'	C1'	90.0°	26.2°
C4'	C3'	C2'	H5	90.0°	97.3°
C3'	C4'	C5'	H8	90.0°	55.0°
C3'	C4'	C5'	H9	90.0°	65.0°
C4'	C3'	O3'	HO3'	90.0°	61.4°
C2'	C3'	C4'	O4'	90.0°	1.9°
C3'	C2'	O2'	C1'	90.0°	112.7°
C3'	C2'	O2'	H5	90.0°	123.7°
C3'	C2'	C1'	H5	90.0°	118.2°
C3'	C2'	C1'	O4'	90.0°	36.9°
C3'	C2'	O2'	C	90.0°	97.3°
C3'	C2'	C1'	N9	90.0°	155.6°
C3'	C2'	C1'	H4	90.0°	81.6°
C2'	C3'	C4'	H7	90.0°	117.5°
C2'	C3'	O3'	HO3'	90.0°	176.3°
C4'	O4'	C1'	C2'	90.0°	39.8°
C4'	O4'	C1'	N9	90.0°	158.4°
C4'	O4'	C1'	H4	90.0°	78.7°
O4'	C4'	C3'	H6	90.0°	116.6°
O4'	C4'	C5'	H8	90.0°	173.0°
O4'	C4'	C5'	H9	90.0°	53.0°
O2'	C2'	C1'	H5	90.0°	123.6°
O2'	C2'	C1'	O4'	90.0°	155.1°
O2'	C2'	C1'	N9	90.0°	86.3°
C2'	O2'	C	H1	90.0°	60.0°
C2'	O2'	C	H2	90.0°	180.0°
C2'	O2'	C	H3	90.0°	60.0°
O2'	C2'	C1'	H4	90.0°	36.5°
O2'	C2'	C3'	H6	90.0°	102.3°
C2'	C1'	O4'	N9	90.0°	118.6°
C2'	C1'	O4'	H4	90.0°	118.6°
C2'	C1'	N9	C8	90.0°	92.9°
C1'	C2'	O2'	C	90.0°	150.0°
C2'	C1'	N9	H4	90.0°	122.8°
C2'	C1'	N9	C4	90.0°	87.2°
C1'	C2'	C3'	H6	90.0°	139.5°
O4'	C1'	N9	C8	90.0°	21.4°
O4'	C1'	N9	H4	90.0°	122.9°
O4'	C1'	N9	C4	90.0°	158.5°
O4'	C1'	C2'	H5	90.0°	81.3°
C1'	O4'	C4'	H7	90.0°	93.2°
N7	C8	N9	H10	90.0°	179.9°
N7	C8	N9	C1'	90.0°	180.0°
N7	C8	N9	C4	90.0°	0.0°
C8	N7	C5	C4	90.0°	0.1°
C8	N7	C5	C6	90.0°	179.7°
N9	C8	N7	C5	90.0°	0.1°
C8	N9	C1'	C4	90.0°	179.9°
C8	N9	C4	C5	90.0°	0.0°
C8	N9	C4	N3	90.0°	180.0°
C8	N9	C1'	H4	90.0°	144.3°
O2'	C	H1	H2	90.0°	120.0°
O2'	C	H1	H3	90.0°	120.0°
O2'	C	H2	H3	90.0°	120.0°
C	O2'	C2'	H5	90.0°	26.4°
N7	C5	C4	N9	90.0°	0.0°
N7	C5	C4	C6	90.0°	179.7°
N7	C5	C4	N3	90.0°	180.0°
N7	C5	C6	O6	90.0°	0.4°
N7	C5	C6	N1	90.0°	179.8°
C5	N7	C8	H10	90.0°	180.0°
C1'	N9	C4	C5	90.0°	179.9°
C1'	N9	C4	N3	90.0°	0.1°
N9	C1'	C2'	H5	90.0°	37.4°
C1'	N9	C8	H10	90.0°	0.1°
N9	C4	C5	N3	90.0°	180.0°
N9	C4	C5	C6	90.0°	179.7°
N9	C4	N3	C2	90.0°	179.9°
C4	N9	C1'	H4	90.0°	35.6°
C4	N9	C8	H10	90.0°	180.0°
C4	C5	C6	O6	90.0°	180.0°
C4	C5	C6	N1	90.0°	0.2°
C5	C4	N3	C2	90.0°	0.1°
C6	C5	C4	N3	90.0°	0.3°
C5	C6	O6	N1	90.0°	179.8°
C5	C6	N1	C2	90.0°	0.0°
C5	C6	N1	H11	90.0°	180.0°
C4	N3	C2	N1	90.0°	0.2°
C4	N3	C2	N2	90.0°	180.0°
O6	C6	N1	C2	90.0°	179.8°
O6	C6	N1	H11	90.0°	0.2°
C6	N1	C2	N3	90.0°	0.2°
C6	N1	C2	H11	90.0°	180.0°
C6	N1	C2	N2	90.0°	180.0°
N3	C2	N1	N2	90.0°	179.8°
N3	C2	N1	H11	90.0°	179.7°
N3	C2	N2	H12	90.0°	179.8°
N3	C2	N2	H13	90.0°	0.2°
N1	C2	N2	H12	90.0°	0.0°
N1	C2	N2	H13	90.0°	180.0°
N2	C2	N1	H11	90.0°	0.0°
C2	N2	H12	H13	90.0°	179.9°
H1	C	H2	H3	90.0°	120.0°
H4	C1'	C2'	H5	90.0°	160.2°
H5	C2'	C3'	H6	90.0°	21.3°
H6	C3'	C4'	H7	90.0°	124.1°
H6	C3'	O3'	HO3'	90.0°	61.3°
H7	C4'	C5'	H8	90.0°	66.1°
H7	C4'	C5'	H9	90.0°	173.9°
HOP2	OP2	P	OP3	90.0°	60.0°

Release date:	2020-04-29
Definition date:	2020-02-11
Last modified:	2020-04-24
Release status:	REL
Processing site:	RCSB