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Summary Geometry Related PDB entries

RES

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O7	P	doub	1.48Å	1.51Å
P	O5	sing	1.61Å	1.51Å
P	O6	sing	1.61Å	1.51Å
P	O4	sing	1.61Å	1.61Å
O5	H5	sing	0.97Å	0.95Å
O6	H6	sing	0.97Å	0.95Å
O4	C4	sing	1.43Å	1.43Å
C4	C3	sing	1.53Å	1.52Å
C4	H4C1	sing	1.09Å	1.11Å
C4	H4C2	sing	1.09Å	1.12Å
C3	O3	sing	1.43Å	1.42Å
C3	C2	sing	1.53Å	1.53Å
C3	H3	sing	1.09Å	1.12Å
O3	HA	sing	0.97Å	0.95Å
C2	O2	sing	1.43Å	1.42Å
C2	C1	sing	1.51Å	1.50Å
C2	H2	sing	1.09Å	1.12Å
O2	HB	sing	0.97Å	0.95Å
C1	O1	doub	1.21Å	1.22Å
C1	N	sing	1.35Å	1.33Å
N	ON	sing	1.42Å	1.40Å
N	H	sing	0.97Å	1.02Å
ON	HN	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O7	P	O5	115.0°	109.5°
O7	P	O6	113.2°	109.5°
O7	P	O4	104.4°	109.5°
O5	P	O6	114.0°	109.5°
O5	P	O4	103.8°	109.5°
P	O5	H5	115.0°	106.8°
O6	P	O4	104.9°	109.4°
P	O6	H6	113.2°	106.8°
P	O4	C4	120.5°	106.8°
O4	C4	C3	108.6°	109.5°
O4	C4	H4C1	112.5°	109.5°
O4	C4	H4C2	112.5°	109.5°
C3	C4	H4C1	112.5°	109.5°
C3	C4	H4C2	112.5°	109.4°
C4	C3	O3	109.3°	109.5°
C4	C3	C2	112.5°	109.5°
C4	C3	H3	108.8°	109.5°
H4C1	C4	H4C2	97.9°	109.5°
O3	C3	C2	108.7°	109.4°
O3	C3	H3	108.8°	109.5°
C3	O3	HA	109.3°	106.8°
C2	C3	H3	108.8°	109.4°
C3	C2	O2	110.9°	109.4°
C3	C2	C1	107.8°	109.5°
C3	C2	H2	109.3°	109.4°
O2	C2	C1	110.3°	109.5°
O2	C2	H2	109.3°	109.5°
C2	O2	HB	110.9°	106.8°
C1	C2	H2	109.3°	109.5°
C2	C1	O1	120.4°	120.0°
C2	C1	N	117.1°	120.0°
O1	C1	N	122.6°	120.0°
C1	N	ON	118.1°	120.0°
C1	N	H	120.9°	120.0°
ON	N	H	121.0°	120.0°
N	ON	HN	118.1°	106.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O7	P	O5	O6	133.1°	120.0°
O7	P	O5	O4	113.4°	120.0°
O7	P	O6	O4	113.2°	120.0°
O7	P	O5	H5	180.0°	60.0°
O7	P	O6	H6	180.0°	179.9°
O7	P	O4	C4	64.8°	55.0°
O5	P	O6	O4	112.9°	120.0°
O5	P	O6	H6	46.0°	60.1°
O5	P	O4	C4	174.4°	175.0°
O6	P	O5	H5	46.9°	60.0°
O6	P	O4	C4	54.5°	65.0°
O4	P	O5	H5	66.6°	180.0°
O4	P	O6	H6	66.8°	59.9°
P	O4	C4	C3	162.8°	179.9°
P	O4	C4	H4C1	37.6°	60.0°
P	O4	C4	H4C2	71.9°	60.0°
O4	C4	C3	H4C1	125.2°	120.0°
O4	C4	C3	H4C2	125.2°	120.0°
O4	C4	H4C1	H4C2	118.4°	120.0°
O4	C4	C3	O3	65.6°	65.0°
O4	C4	C3	C2	173.7°	175.0°
O4	C4	C3	H3	53.1°	55.0°
C3	C4	H4C1	H4C2	118.5°	120.0°
C4	C3	O3	C2	123.0°	120.0°
C4	C3	O3	H3	118.7°	120.0°
C4	C3	C2	H3	120.6°	120.0°
C4	C3	O3	HA	180.0°	60.0°
C4	C3	C2	O2	52.4°	60.0°
C4	C3	C2	C1	173.2°	180.0°
C4	C3	C2	H2	68.1°	60.0°
H4C1	C4	C3	O3	169.2°	174.9°
H4C1	C4	C3	C2	48.4°	55.0°
H4C1	C4	C3	H3	72.2°	65.0°
H4C2	C4	C3	O3	59.7°	55.0°
H4C2	C4	C3	C2	61.1°	65.0°
H4C2	C4	C3	H3	178.3°	175.0°
O3	C3	C2	H3	118.3°	120.0°
O3	C3	C2	O2	173.5°	180.0°
O3	C3	C2	C1	65.7°	60.0°
O3	C3	C2	H2	53.0°	60.0°
C2	C3	O3	HA	56.9°	60.0°
C3	C2	O2	C1	119.4°	120.0°
C3	C2	O2	H2	120.5°	120.0°
C3	C2	C1	H2	118.7°	120.0°
C3	C2	O2	HB	180.0°	60.1°
C3	C2	C1	O1	55.9°	115.0°
C3	C2	C1	N	123.0°	65.0°
H3	C3	O3	HA	61.3°	180.0°
H3	C3	C2	O2	68.2°	60.0°
H3	C3	C2	C1	52.6°	60.0°
H3	C3	C2	H2	171.3°	180.0°
O2	C2	C1	H2	120.1°	120.0°
O2	C2	C1	O1	65.3°	5.0°
O2	C2	C1	N	115.8°	175.0°
C1	C2	O2	HB	60.7°	59.9°
C2	C1	O1	N	178.9°	180.0°
C2	C1	N	ON	179.4°	180.0°
C2	C1	N	H	0.6°	0.0°
H2	C2	O2	HB	59.5°	180.0°
H2	C2	C1	O1	174.6°	125.0°
H2	C2	C1	N	4.3°	55.0°
O1	C1	N	ON	0.5°	0.0°
O1	C1	N	H	179.5°	180.0°
C1	N	ON	H	180.0°	179.9°
C1	N	ON	HN	180.0°	180.0°
H	N	ON	HN	0.0°	0.0°

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