RDV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C9	sing	1.47Å	1.49Å
N1	C10	sing	1.47Å	1.50Å
C9	C8	sing	1.53Å	1.51Å
C8	N	sing	1.47Å	1.47Å
C11	C10	sing	1.53Å	1.50Å
C11	N	sing	1.47Å	1.46Å
N	C7	sing	1.35Å	1.35Å
C7	O	doub	1.21Å	1.21Å
C7	C6	sing	1.51Å	1.51Å
C6	C5	sing	1.53Å	1.52Å
C5	C3	sing	1.53Å	1.50Å
C4	C3	sing	1.54Å	1.53Å
C4	C	sing	1.54Å	1.52Å
C3	C2	sing	1.54Å	1.51Å
C	C1	sing	1.55Å	1.51Å
C2	C1	sing	1.55Å	1.49Å
C4	H1	sing	1.09Å	1.10Å
C4	H2	sing	1.09Å	1.10Å
C5	H3	sing	1.09Å	1.10Å
C5	H4	sing	1.09Å	1.10Å
C6	H5	sing	1.09Å	1.10Å
C6	H6	sing	1.09Å	1.10Å
N1	H7	sing	1.01Å	1.00Å
C8	H9	sing	1.09Å	1.10Å
C8	H10	sing	1.09Å	1.10Å
C9	H11	sing	1.09Å	1.10Å
C9	H12	sing	1.09Å	1.10Å
C10	H13	sing	1.09Å	1.10Å
C10	H14	sing	1.09Å	1.10Å
C11	H15	sing	1.09Å	1.10Å
C11	H16	sing	1.09Å	1.10Å
C3	H17	sing	1.09Å	1.10Å
C2	H18	sing	1.09Å	1.10Å
C2	H19	sing	1.09Å	1.10Å
C1	H20	sing	1.09Å	1.10Å
C1	H21	sing	1.09Å	1.10Å
C	H22	sing	1.09Å	1.10Å
C	H23	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C9	N1	C10	111.6°	111.3°
N1	C9	C8	109.9°	109.3°
C9	N1	H7	108.9°	111.0°
N1	C9	H11	109.3°	109.5°
N1	C9	H12	109.4°	109.5°
N1	C10	C11	109.7°	109.3°
C10	N1	H7	108.9°	111.0°
N1	C10	H13	109.4°	109.5°
N1	C10	H14	109.4°	109.5°
C9	C8	N	109.5°	108.5°
C9	C8	H9	109.5°	109.6°
C9	C8	H10	109.4°	109.8°
C8	C9	H11	109.4°	109.5°
C8	C9	H12	109.4°	109.5°
C8	N	C11	113.9°	118.2°
C8	N	C7	124.3°	120.9°
N	C8	H9	109.4°	109.6°
N	C8	H10	109.5°	109.6°
C10	C11	N	100.5°	108.5°
C11	C10	H13	109.4°	109.5°
C11	C10	H14	109.4°	109.5°
C10	C11	H15	111.7°	109.7°
C10	C11	H16	111.7°	109.6°
C11	N	C7	121.6°	120.9°
N	C11	H15	111.6°	109.7°
N	C11	H16	111.7°	109.6°
N	C7	O	122.0°	120.0°
N	C7	C6	118.0°	120.0°
O	C7	C6	119.9°	120.0°
C7	C6	C5	111.0°	109.5°
C7	C6	H5	109.1°	109.5°
C7	C6	H6	109.1°	109.5°
C6	C5	C3	114.5°	109.4°
C6	C5	H3	108.2°	109.5°
C6	C5	H4	108.2°	109.5°
C5	C6	H5	109.1°	109.5°
C5	C6	H6	109.1°	109.5°
C5	C3	C4	110.4°	110.0°
C5	C3	C2	111.1°	110.0°
C3	C5	H3	108.2°	109.4°
C3	C5	H4	108.2°	109.5°
C5	C3	H17	111.6°	110.0°
C3	C4	C	105.2°	106.6°
C4	C3	C2	101.0°	106.6°
C3	C4	H1	110.5°	110.1°
C3	C4	H2	110.5°	110.0°
C4	C3	H17	111.1°	110.1°
C4	C	C1	105.9°	104.2°
C	C4	H1	110.5°	110.0°
C	C4	H2	110.5°	110.0°
C4	C	H22	110.3°	110.5°
C4	C	H23	110.3°	110.6°
C3	C2	C1	102.9°	104.2°
C2	C3	H17	111.3°	110.1°
C3	C2	H18	111.1°	110.5°
C3	C2	H19	111.1°	110.5°
C	C1	C2	103.9°	102.7°
C	C1	H20	110.9°	110.7°
C	C1	H21	110.9°	110.9°
C1	C	H22	110.4°	110.5°
C1	C	H23	110.4°	110.5°
C1	C2	H18	111.1°	110.5°
C1	C2	H19	111.1°	110.5°
C2	C1	H20	110.8°	110.8°
C2	C1	H21	110.8°	110.8°
H1	C4	H2	109.5°	110.1°
H3	C5	H4	109.5°	109.5°
H5	C6	H6	109.5°	109.5°
H9	C8	H10	109.5°	109.6°
H11	C9	H12	109.4°	109.6°
H13	C10	H14	109.5°	109.6°
H15	C11	H16	109.5°	109.7°
H18	C2	H19	109.5°	110.5°
H20	C1	H21	109.4°	110.7°
H22	C	H23	109.5°	110.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C9	N1	C10	H7	120.3°	124.1°
N1	C9	C8	H11	120.1°	120.0°
N1	C9	C8	H12	120.1°	119.9°
N1	C9	C8	N	48.9°	53.8°
C9	N1	C10	C11	62.7°	63.1°
N1	C9	C8	H9	71.1°	173.6°
N1	C9	C8	H10	168.9°	65.9°
N1	C9	H11	H12	119.8°	120.1°
C9	N1	C10	H13	57.4°	177.0°
C9	N1	C10	H14	177.3°	56.9°
C10	N1	C9	C8	51.1°	63.1°
N1	C10	C11	H13	120.0°	119.9°
N1	C10	C11	H14	120.0°	120.0°
N1	C10	C11	N	66.4°	53.9°
C10	N1	C9	H11	171.2°	56.8°
C10	N1	C9	H12	69.0°	177.0°
N1	C10	H13	H14	119.9°	120.1°
N1	C10	C11	H15	175.1°	65.9°
N1	C10	C11	H16	52.1°	173.6°
C9	C8	N	H9	120.0°	119.7°
C9	C8	N	H10	120.0°	119.9°
C9	C8	N	C11	62.2°	51.2°
C9	C8	N	C7	121.7°	128.8°
C8	C9	N1	H7	171.4°	61.0°
C9	C8	H9	H10	120.0°	120.6°
C8	C9	H11	H12	119.8°	120.0°
C8	N	C11	C10	68.5°	51.2°
C8	N	C11	C7	176.3°	180.0°
C8	N	C7	O	7.2°	0.0°
C8	N	C7	C6	176.3°	180.0°
N	C8	H9	H10	120.0°	120.4°
N	C8	C9	H11	169.0°	66.1°
N	C8	C9	H12	71.2°	173.8°
C8	N	C11	H15	173.0°	68.5°
C8	N	C11	H16	50.0°	170.9°
C10	C11	N	H15	118.5°	119.8°
C10	C11	N	H16	118.5°	119.7°
C10	C11	N	C7	115.2°	128.8°
C11	C10	N1	H7	177.0°	61.0°
C11	C10	H13	H14	119.9°	120.1°
C10	C11	H15	H16	124.2°	120.5°
C11	N	C7	O	176.9°	180.0°
C11	N	C7	C6	0.4°	0.0°
C11	N	C8	H9	57.8°	170.9°
C11	N	C8	H10	177.8°	68.7°
N	C11	C10	H13	53.6°	173.8°
N	C11	C10	H14	173.6°	66.1°
N	C11	H15	H16	124.2°	120.4°
N	C7	O	C6	176.4°	180.0°
N	C7	C6	C5	112.7°	180.0°
N	C7	C6	H5	7.5°	60.0°
N	C7	C6	H6	127.1°	60.0°
C7	N	C8	H9	118.3°	9.1°
C7	N	C8	H10	1.7°	111.3°
C7	N	C11	H15	3.3°	111.4°
C7	N	C11	H16	126.2°	9.1°
O	C7	C6	C5	63.9°	0.0°
O	C7	C6	H5	175.9°	120.0°
O	C7	C6	H6	56.4°	120.0°
C7	C6	C5	H5	120.2°	120.0°
C7	C6	C5	H6	120.2°	120.0°
C7	C6	C5	C3	157.9°	180.0°
C7	C6	C5	H3	37.2°	60.0°
C7	C6	C5	H4	81.3°	60.0°
C7	C6	H5	H6	119.3°	120.0°
C6	C5	C3	H3	120.7°	120.0°
C6	C5	C3	H4	120.7°	120.0°
C6	C5	C3	C4	49.0°	175.0°
C6	C5	C3	C2	160.2°	67.9°
C6	C5	H3	H4	117.7°	120.0°
C5	C6	H5	H6	119.3°	120.0°
C6	C5	C3	H17	74.9°	53.6°
C5	C3	C4	C2	117.6°	119.2°
C5	C3	C4	H17	124.3°	121.4°
C5	C3	C4	C	148.8°	119.3°
C5	C3	C2	H17	125.0°	121.4°
C5	C3	C2	C1	162.3°	142.9°
C5	C3	C4	H1	29.5°	0.0°
C5	C3	C4	H2	91.9°	121.5°
C3	C5	H3	H4	117.7°	120.0°
C3	C5	C6	H5	81.9°	60.0°
C3	C5	C6	H6	37.7°	60.0°
C5	C3	C2	H18	78.7°	98.4°
C5	C3	C2	H19	43.4°	24.2°
C3	C4	C	H1	119.3°	119.3°
C3	C4	C	H2	119.3°	119.2°
C4	C3	C2	H17	117.9°	119.3°
C3	C4	C	C1	6.3°	23.5°
C4	C3	C2	C1	45.3°	23.7°
C3	C4	H1	H2	122.0°	121.4°
C4	C3	C5	H3	169.8°	65.0°
C4	C3	C5	H4	71.7°	55.0°
C4	C3	C2	H18	164.2°	142.3°
C4	C3	C2	H19	73.7°	95.1°
C3	C4	C	H22	125.8°	95.1°
C3	C4	C	H23	113.1°	142.2°
C	C4	C3	C2	31.2°	0.1°
C4	C	C1	H22	119.4°	118.7°
C4	C	C1	H23	119.5°	118.7°
C4	C	C1	C2	21.8°	37.9°
C	C4	H1	H2	122.0°	121.4°
C	C4	C3	H17	86.9°	119.3°
C4	C	C1	H20	140.9°	80.4°
C4	C	C1	H21	97.4°	156.3°
C4	C	H22	H23	121.6°	122.7°
C3	C2	C1	C	42.1°	38.0°
C3	C2	C1	H18	118.9°	118.7°
C3	C2	C1	H19	118.9°	118.8°
C2	C3	C4	H1	88.1°	119.2°
C2	C3	C4	H2	150.5°	119.3°
C2	C3	C5	H3	79.1°	52.2°
C2	C3	C5	H4	39.4°	172.2°
C3	C2	H18	H19	123.0°	122.6°
C3	C2	C1	H20	161.2°	80.3°
C3	C2	C1	H21	77.1°	156.5°
C	C1	C2	H20	119.1°	118.3°
C	C1	C2	H21	119.1°	118.5°
C1	C	C4	H1	113.0°	142.9°
C1	C	C4	H2	125.7°	95.7°
C	C1	C2	H18	161.0°	156.6°
C	C1	C2	H19	76.9°	80.8°
C	C1	H20	H21	122.6°	123.4°
C1	C	H22	H23	121.6°	122.6°
C1	C2	C3	H17	72.7°	95.7°
C1	C2	H18	H19	123.1°	122.6°
C2	C1	H20	H21	122.6°	123.3°
C2	C1	C	H22	97.7°	80.7°
C2	C1	C	H23	141.2°	156.7°
H1	C4	C3	H17	153.8°	121.4°
H1	C4	C	H22	6.5°	24.3°
H1	C4	C	H23	127.6°	98.4°
H2	C4	C3	H17	32.4°	0.1°
H2	C4	C	H22	114.9°	145.7°
H2	C4	C	H23	6.2°	23.0°
H3	C5	C6	H5	157.4°	60.0°
H3	C5	C6	H6	83.1°	180.0°
H3	C5	C3	H17	45.8°	173.6°
H4	C5	C6	H5	38.9°	180.0°
H4	C5	C6	H6	158.4°	60.0°
H4	C5	C3	H17	164.3°	66.4°
H7	N1	C9	H11	68.5°	179.1°
H7	N1	C9	H12	51.3°	58.9°
H7	N1	C10	H13	63.0°	58.9°
H7	N1	C10	H14	57.0°	179.0°
H9	C8	C9	H11	48.9°	53.6°
H9	C8	C9	H12	168.8°	66.5°
H10	C8	C9	H11	71.0°	174.1°
H10	C8	C9	H12	48.8°	54.0°
H13	C10	C11	H15	64.9°	54.0°
H13	C10	C11	H16	172.2°	66.5°
H14	C10	C11	H15	55.1°	174.1°
H14	C10	C11	H16	67.9°	53.6°
H17	C3	C2	H18	46.3°	23.0°
H17	C3	C2	H19	168.4°	145.6°
H18	C2	C1	H20	79.9°	38.4°
H18	C2	C1	H21	41.9°	84.9°
H19	C2	C1	H20	42.2°	160.9°
H19	C2	C1	H21	164.0°	37.7°
H20	C1	C	H22	21.5°	160.9°
H20	C1	C	H23	99.7°	38.3°
H21	C1	C	H22	143.2°	37.6°
H21	C1	C	H23	22.1°	85.0°

Release date:	2020-06-03
Definition date:	2020-02-10
Last modified:	2020-05-29
Release status:	REL
Processing site:	RCSB
Derived from:	5RCC