Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1P | P | doub | 1.48Å | 1.50Å | |
| P | O2P | sing | 1.61Å | 1.52Å | |
| P | O3P | sing | 1.61Å | 1.51Å | |
| P | O1' | sing | 1.61Å | 1.60Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| O1' | C1' | sing | 1.43Å | 1.43Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.43Å | 1.43Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 113.4° | 109.4° |
| O1P | P | O3P | 115.3° | 109.5° |
| O1P | P | O1' | 103.0° | 109.5° |
| O2P | P | O3P | 114.1° | 109.5° |
| O2P | P | O1' | 103.5° | 109.5° |
| P | O2P | HOP2 | 109.5° | 106.8° |
| O3P | P | O1' | 105.7° | 109.5° |
| P | O3P | HOP3 | 109.5° | 106.8° |
| P | O1' | C1' | 131.9° | 106.8° |
| O1' | C1' | C2' | 126.8° | 110.4° |
| O1' | C1' | O4' | 128.6° | 110.3° |
| O1' | C1' | H1' | 73.4° | 110.3° |
| C2' | C1' | O4' | 88.4° | 105.1° |
| C2' | C1' | H1' | 123.2° | 110.3° |
| C1' | C2' | O2' | 116.2° | 111.1° |
| C1' | C2' | C3' | 105.1° | 101.0° |
| C1' | C2' | H2' | 112.0° | 111.1° |
| O4' | C1' | H1' | 121.2° | 110.3° |
| C1' | O4' | C4' | 115.4° | 110.0° |
| O2' | C2' | C3' | 118.7° | 111.1° |
| O2' | C2' | H2' | 95.7° | 110.9° |
| C2' | O2' | HO2' | 109.5° | 106.8° |
| C3' | C2' | H2' | 109.0° | 111.2° |
| C2' | C3' | O3' | 115.8° | 110.9° |
| C2' | C3' | C4' | 99.4° | 102.1° |
| C2' | C3' | H3' | 110.9° | 110.8° |
| O3' | C3' | C4' | 105.3° | 111.1° |
| O3' | C3' | H3' | 105.5° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 106.8° |
| C4' | C3' | H3' | 120.5° | 110.8° |
| C3' | C4' | O4' | 101.3° | 107.7° |
| C3' | C4' | C5' | 121.9° | 109.8° |
| C3' | C4' | H4' | 105.6° | 109.9° |
| O4' | C4' | C5' | 104.6° | 109.8° |
| O4' | C4' | H4' | 122.6° | 109.8° |
| C5' | C4' | H4' | 102.4° | 109.9° |
| C4' | C5' | O5' | 115.7° | 109.5° |
| C4' | C5' | H5'1 | 106.0° | 109.5° |
| C4' | C5' | H5'2 | 107.5° | 109.4° |
| O5' | C5' | H5'1 | 106.0° | 109.5° |
| O5' | C5' | H5'2 | 107.5° | 109.5° |
| C5' | O5' | HO5' | 109.5° | 106.8° |
| H5'1 | C5' | H5'2 | 114.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 134.8° | 120.0° |
| O1P | P | O2P | O1' | 110.8° | 120.0° |
| O1P | P | O3P | O1' | 113.0° | 120.0° |
| O1P | P | O2P | HOP2 | 8.8° | 60.0° |
| O1P | P | O3P | HOP3 | 157.9° | 180.0° |
| O1P | P | O1' | C1' | 164.1° | 55.0° |
| O2P | P | O3P | O1' | 113.1° | 120.0° |
| O2P | P | O3P | HOP3 | 24.0° | 60.0° |
| O2P | P | O1' | C1' | 45.7° | 175.0° |
| O3P | P | O2P | HOP2 | 143.6° | 60.0° |
| O3P | P | O1' | C1' | 74.5° | 65.0° |
| O1' | P | O2P | HOP2 | 102.0° | 180.0° |
| O1' | P | O3P | HOP3 | 89.1° | 60.0° |
| P | O1' | C1' | C2' | 105.3° | 152.8° |
| P | O1' | C1' | O4' | 18.3° | 91.5° |
| P | O1' | C1' | H1' | 135.3° | 30.7° |
| O1' | C1' | C2' | O4' | 139.3° | 119.0° |
| O1' | C1' | C2' | H1' | 93.7° | 122.2° |
| O1' | C1' | O4' | H1' | 93.2° | 122.1° |
| O1' | C1' | C2' | O2' | 46.0° | 37.4° |
| O1' | C1' | C2' | C3' | 87.4° | 155.4° |
| O1' | C1' | C2' | H2' | 154.5° | 86.6° |
| O1' | C1' | O4' | C4' | 89.9° | 143.4° |
| C2' | C1' | O4' | H1' | 128.6° | 118.9° |
| C1' | C2' | O2' | C3' | 126.8° | 111.7° |
| C1' | C2' | O2' | H2' | 117.9° | 124.1° |
| C1' | C2' | C3' | H2' | 120.2° | 117.9° |
| C1' | C2' | O2' | HO2' | 160.6° | 61.4° |
| C1' | C2' | C3' | O3' | 70.4° | 152.5° |
| C1' | C2' | C3' | C4' | 41.7° | 34.1° |
| C1' | C2' | C3' | H3' | 169.5° | 84.0° |
| C2' | C1' | O4' | C4' | 48.3° | 24.4° |
| O4' | C1' | C2' | O2' | 174.7° | 81.6° |
| O4' | C1' | C2' | C3' | 52.0° | 36.4° |
| O4' | C1' | C2' | H2' | 66.2° | 154.4° |
| C1' | O4' | C4' | C3' | 25.9° | 1.7° |
| C1' | O4' | C4' | C5' | 153.4° | 117.8° |
| C1' | O4' | C4' | H4' | 91.1° | 121.3° |
| H1' | C1' | C2' | O2' | 47.8° | 159.6° |
| H1' | C1' | C2' | C3' | 178.9° | 82.5° |
| H1' | C1' | C2' | H2' | 60.7° | 35.5° |
| H1' | C1' | O4' | C4' | 176.9° | 94.5° |
| O2' | C2' | C3' | H2' | 108.0° | 124.1° |
| O2' | C2' | C3' | O3' | 61.5° | 34.5° |
| O2' | C2' | C3' | C4' | 173.6° | 83.9° |
| O2' | C2' | C3' | H3' | 58.6° | 158.0° |
| C3' | C2' | O2' | HO2' | 72.7° | 173.0° |
| C2' | C3' | O3' | C4' | 108.6° | 112.8° |
| C2' | C3' | O3' | H3' | 123.0° | 123.5° |
| C2' | C3' | C4' | H3' | 121.1° | 118.1° |
| C2' | C3' | O3' | HO3' | 18.4° | 61.5° |
| C2' | C3' | C4' | O4' | 11.1° | 21.3° |
| C2' | C3' | C4' | C5' | 104.1° | 140.8° |
| C2' | C3' | C4' | H4' | 140.0° | 98.3° |
| H2' | C2' | O2' | HO2' | 42.7° | 62.8° |
| H2' | C2' | C3' | O3' | 169.4° | 89.6° |
| H2' | C2' | C3' | C4' | 78.5° | 152.0° |
| H2' | C2' | C3' | H3' | 49.3° | 33.9° |
| O3' | C3' | C4' | H3' | 118.8° | 123.7° |
| O3' | C3' | C4' | O4' | 109.0° | 139.5° |
| O3' | C3' | C4' | C5' | 135.8° | 101.0° |
| O3' | C3' | C4' | H4' | 19.9° | 19.9° |
| C4' | C3' | O3' | HO3' | 90.2° | 174.3° |
| C3' | C4' | O4' | C5' | 127.5° | 119.5° |
| C3' | C4' | O4' | H4' | 117.0° | 119.6° |
| C3' | C4' | C5' | H4' | 117.5° | 120.9° |
| C3' | C4' | C5' | O5' | 168.2° | 175.2° |
| C3' | C4' | C5' | H5'1 | 51.0° | 64.8° |
| C3' | C4' | C5' | H5'2 | 71.8° | 55.2° |
| H3' | C3' | O3' | HO3' | 141.4° | 62.0° |
| H3' | C3' | C4' | O4' | 132.2° | 96.8° |
| H3' | C3' | C4' | C5' | 17.0° | 22.7° |
| H3' | C3' | C4' | H4' | 99.0° | 143.6° |
| O4' | C4' | C5' | H4' | 128.9° | 120.9° |
| O4' | C4' | C5' | O5' | 54.6° | 66.6° |
| O4' | C4' | C5' | H5'1 | 62.6° | 53.4° |
| O4' | C4' | C5' | H5'2 | 174.6° | 173.4° |
| C4' | C5' | O5' | H5'1 | 117.2° | 120.1° |
| C4' | C5' | O5' | H5'2 | 120.0° | 119.9° |
| C4' | C5' | H5'1 | H5'2 | 118.3° | 120.0° |
| C4' | C5' | O5' | HO5' | 147.1° | 180.0° |
| H4' | C4' | C5' | O5' | 74.3° | 54.2° |
| H4' | C4' | C5' | H5'1 | 168.5° | 174.3° |
| H4' | C4' | C5' | H5'2 | 45.7° | 65.7° |
| O5' | C5' | H5'1 | H5'2 | 118.2° | 120.0° |
| H5'1 | C5' | O5' | HO5' | 95.7° | 60.0° |
| H5'2 | C5' | O5' | HO5' | 27.1° | 60.0° |
