Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

RDA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C7O4sing1.45Å1.43Å
C7H71sing1.09Å1.10Å
C7H72sing1.09Å1.10Å
C7H73sing1.09Å1.10Å
O4C6sing1.35Å1.36Å
C6O3doub1.22Å1.23Å
C6C5sing1.47Å1.53Å
C5C4sing1.40Å1.39ÅAromatic
C5C8doub1.40Å1.39ÅAromatic
C4O2sing1.36Å1.36Å
C4C3doub1.38Å1.39ÅAromatic
O2HO2sing0.97Å0.95Å
C3C2sing1.39Å1.39ÅAromatic
C3H3sing1.08Å1.08Å
C2O1sing1.36Å1.36Å
C2C1doub1.39Å1.39ÅAromatic
O1HO1sing0.97Å0.95Å
C1CLsing1.74Å1.73Å
C1C8sing1.38Å1.40ÅAromatic
C8C9sing1.51Å1.53Å
C9C10sing1.53Å1.53Å
C9H91sing1.09Å1.10Å
C9H92sing1.09Å1.10Å
C10C11sing1.51Å1.53Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C11O5doub1.21Å1.23Å
C11N1sing1.35Å1.33Å
N1C12sing1.40Å1.33Å
N1HN1sing0.97Å1.00Å
C12C18sing1.39Å1.39ÅAromatic
C12C13doub1.39Å1.39ÅAromatic
C18C17doub1.39Å1.39ÅAromatic
C18H18sing1.08Å1.08Å
C17O8sing1.36Å1.23Å
C17C15sing1.39Å1.39ÅAromatic
O8HO8sing0.97Å0.95Å
C15O7sing1.36Å1.36Å
C15C14doub1.39Å1.39ÅAromatic
O7C16sing1.43Å1.43Å
C16H161sing1.09Å1.10Å
C16H162sing1.09Å1.10Å
C16H163sing1.09Å1.10Å
C14C13sing1.39Å1.39ÅAromatic
C14H14sing1.08Å1.08Å
C13O6sing1.36Å1.23Å
O6HO6sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O4C7H71109.4°109.5°
O4C7H72109.4°109.5°
O4C7H73109.5°109.4°
C7O4C6112.1°120.0°
H71C7H72109.5°109.5°
H71C7H73109.5°109.5°
H72C7H73109.5°109.5°
O4C6O3120.7°120.0°
O4C6C5118.8°120.0°
O3C6C5120.4°119.9°
C6C5C4118.8°120.1°
C6C5C8119.9°120.1°
C4C5C8121.2°119.7°
C5C4O2120.2°120.1°
C5C4C3120.4°119.8°
C5C8C1117.7°119.9°
C5C8C9121.3°120.0°
O2C4C3119.4°120.2°
C4O2HO2109.5°106.7°
C4C3C2119.1°120.1°
C4C3H3120.5°119.9°
C2C3H3120.5°120.0°
C3C2O1119.9°119.9°
C3C2C1120.2°120.3°
O1C2C1119.9°119.9°
C2O1HO1109.5°106.8°
C2C1CL118.2°119.9°
C2C1C8121.5°120.3°
CLC1C8120.3°119.9°
C1C8C9121.0°120.1°
C8C9C10111.3°109.5°
C8C9H91108.5°109.5°
C8C9H92108.9°109.5°
C10C9H91108.5°109.4°
C10C9H92108.9°109.5°
C9C10C11112.0°109.5°
C9C10H101108.1°109.4°
C9C10H102108.6°109.5°
H91C9H92110.9°109.4°
C11C10H101108.0°109.5°
C11C10H102108.6°109.5°
C10C11O5120.8°120.0°
C10C11N1114.8°120.0°
H101C10H102111.5°109.5°
O5C11N1124.4°120.0°
C11N1C12124.7°120.0°
C11N1HN1117.6°120.0°
C12N1HN1117.6°120.0°
N1C12C18122.2°120.0°
N1C12C13118.5°120.1°
C18C12C13119.2°120.0°
C12C18C17120.5°120.0°
C12C18H18119.8°120.1°
C12C13C14120.4°120.0°
C12C13O6119.8°120.0°
C17C18H18119.8°120.0°
C18C17O8119.9°120.0°
C18C17C15120.1°120.0°
O8C17C15120.0°120.0°
C17O8HO8109.5°106.8°
C17C15O7120.3°120.0°
C17C15C14119.5°120.0°
O7C15C14120.1°120.0°
C15O7C16111.5°106.8°
C15C14C13120.2°120.0°
C15C14H14119.9°120.0°
O7C16H161109.5°109.5°
O7C16H162109.5°109.5°
O7C16H163109.5°109.4°
H161C16H162109.5°109.5°
H161C16H163109.5°109.4°
H162C16H163109.5°109.5°
C13C14H14119.9°120.0°
C14C13O6119.7°120.0°
C13O6HO6109.5°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4C7H71H72120.0°120.0°
O4C7H71H73120.0°120.0°
O4C7H72H73120.0°120.0°
C7O4C6O32.6°0.0°
C7O4C6C5179.8°180.0°
H71C7H72H73120.0°120.0°
H71C7O4C626.5°60.0°
H72C7O4C6146.5°60.0°
H73C7O4C693.5°180.0°
O4C6O3C5177.6°180.0°
O4C6C5C4137.6°90.0°
O4C6C5C839.4°89.7°
O3C6C5C444.8°90.0°
O3C6C5C8138.2°90.3°
C6C5C4C8176.9°179.7°
C6C5C4O21.8°0.1°
C6C5C4C3176.9°179.9°
C6C5C8C1176.8°179.8°
C6C5C8C93.8°0.3°
C5C4O2C3178.7°180.0°
C5C4O2HO249.8°90.0°
C5C4C3C20.1°0.0°
C5C4C3H3179.9°179.9°
C4C5C8C10.1°0.5°
C4C5C8C9179.3°180.0°
C8C5C4O2178.8°179.7°
C8C5C4C30.1°0.3°
C5C8C1C20.1°0.5°
C5C8C1CL178.7°179.8°
C5C8C1C9179.3°179.5°
C5C8C9C10100.3°90.5°
C5C8C9H9118.9°29.5°
C5C8C9H92139.7°149.5°
O2C4C3C2178.6°180.0°
O2C4C3H31.4°0.1°
C3C4O2HO2128.9°90.0°
C4C3C2H3180.0°179.9°
C4C3C2O1178.4°180.0°
C4C3C2C10.3°0.0°
C3C2O1C1178.7°180.0°
C3C2O1HO1128.1°90.0°
C3C2C1CL178.5°180.0°
C3C2C1C80.3°0.3°
H3C3C2O11.6°0.1°
H3C3C2C1179.7°179.9°
O1C2C1CL2.8°0.1°
O1C2C1C8178.3°179.8°
C1C2O1HO153.3°90.0°
C2C1CLC8178.8°179.7°
C2C1C8C9179.5°180.0°
CLC1C8C90.7°0.3°
C1C8C9C1080.4°90.0°
C1C8C9H91160.4°150.0°
C1C8C9H9239.6°30.0°
C8C9C10H91119.3°120.1°
C8C9C10H92120.0°120.0°
C8C9H91H92119.5°120.0°
C8C9C10C11177.1°180.0°
C8C9C10H10158.2°60.0°
C8C9C10H10262.9°60.0°
C10C9H91H92119.5°119.9°
C9C10C11H101118.9°120.0°
C9C10C11H102120.0°120.0°
C9C10H101H102119.3°120.0°
C9C10C11O574.8°0.0°
C9C10C11N1104.2°180.0°
H91C9C10C1163.6°60.0°
H91C9C10H101177.5°180.0°
H91C9C10H10256.3°60.1°
H92C9C10C1157.1°60.0°
H92C9C10H10161.8°60.0°
H92C9C10H102177.1°180.0°
C11C10H101H102119.3°120.0°
C10C11O5N1178.9°179.9°
C10C11N1C12179.0°174.2°
C10C11N1HN11.0°5.9°
H101C10C11O544.1°120.0°
H101C10C11N1136.9°60.1°
H102C10C11O5165.2°120.0°
H102C10C11N115.8°60.0°
O5C11N1C122.0°5.7°
O5C11N1HN1178.0°174.2°
C11N1C12HN1180.0°179.9°
C11N1C12C183.8°24.8°
C11N1C12C13179.4°155.0°
N1C12C18C13176.8°179.8°
N1C12C18C17176.4°180.0°
N1C12C18H183.6°0.1°
N1C12C13C14176.5°179.7°
N1C12C13O63.8°0.2°
HN1N1C12C18176.2°155.3°
HN1N1C12C130.6°24.9°
C12C18C17H18180.0°180.0°
C12C18C17O8179.2°180.0°
C12C18C17C150.1°0.0°
C18C12C13C140.4°0.5°
C18C12C13O6179.2°180.0°
C13C12C18C170.4°0.2°
C13C12C18H18179.6°179.7°
C12C13C14C150.1°0.5°
C12C13C14O6179.6°179.5°
C12C13C14H14179.9°179.7°
C12C13O6HO6144.7°90.6°
C18C17O8C15179.3°180.0°
C18C17O8HO835.7°90.0°
C18C17C15O7178.1°180.0°
C18C17C15C140.2°0.0°
H18C18C17O80.9°0.0°
H18C18C17C15179.9°180.0°
O8C17C15O71.1°0.0°
O8C17C15C14179.5°180.0°
C15C17O8HO8145.1°90.0°
C17C15O7C14178.3°180.0°
C17C15O7C1691.1°180.0°
C17C15C14C130.2°0.3°
C17C15C14H14179.8°180.0°
C15O7C16H16114.3°60.1°
C15O7C16H162134.3°60.0°
C15O7C16H163105.7°180.0°
O7C15C14C13178.1°179.7°
O7C15C14H141.9°0.0°
C14C15O7C1690.6°0.0°
C15C14C13H14180.0°179.8°
C15C14C13O6179.5°180.0°
O7C16H161H162120.0°120.0°
O7C16H161H163120.0°119.9°
O7C16H162H163120.0°120.0°
H161C16H162H163120.0°120.0°
C14C13O6HO635.6°90.0°
H14C14C13O60.4°0.2°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon