RCE
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | P | sing | 1.61Å | 1.55Å | |
| O1P | P | doub | 1.48Å | 1.53Å | |
| P | O2P | sing | 1.61Å | 1.52Å | |
| P | O3P | sing | 1.61Å | 1.63Å | |
| C1' | N1 | sing | 1.46Å | 1.48Å | |
| C2 | N1 | sing | 1.35Å | 1.36Å | |
| N1 | C6 | sing | 1.37Å | 1.37Å | |
| O2 | C2 | doub | 1.22Å | 1.32Å | |
| C2 | N3 | sing | 1.35Å | 1.31Å | |
| N3 | C4 | sing | 1.35Å | 1.36Å | |
| C4 | C5 | sing | 1.42Å | 1.44Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C6 | C5 | doub | 1.35Å | 1.39Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C2' | C1' | sing | 1.56Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O2A | C2' | sing | 1.46Å | 1.44Å | |
| C2' | C3' | sing | 1.57Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2A | C6' | sing | 1.44Å | 1.47Å | |
| O2P | HO2P | sing | 0.97Å | 0.95Å | |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| C3' | C4' | sing | 1.57Å | 1.50Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| O3P | HO3P | sing | 0.97Å | 0.95Å | |
| C6' | C4' | sing | 1.56Å | 1.51Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | O4' | sing | 1.46Å | 1.44Å | |
| C5' | O5' | sing | 1.43Å | 1.39Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C6' | C7' | sing | 1.53Å | 1.53Å | |
| C6' | H6' | sing | 1.09Å | 1.10Å | |
| C7' | H7' | sing | 1.09Å | 1.10Å | |
| C7' | H7'A | sing | 1.09Å | 1.10Å | |
| C7' | H7'B | sing | 1.09Å | 1.10Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | P | O1P | 110.1° | 109.4° |
| O5' | P | O2P | 106.9° | 109.5° |
| O5' | P | O3P | 104.5° | 109.5° |
| P | O5' | C5' | 121.4° | 123.0° |
| O1P | P | O2P | 114.9° | 109.5° |
| O1P | P | O3P | 107.2° | 109.5° |
| O2P | P | O3P | 112.8° | 109.5° |
| P | O2P | HO2P | 109.5° | 114.0° |
| P | O3P | HO3P | 109.5° | 114.0° |
| C1' | N1 | C2 | 118.1° | 119.7° |
| C1' | N1 | C6 | 122.2° | 119.7° |
| N1 | C1' | C2' | 112.2° | 110.3° |
| N1 | C1' | O4' | 108.6° | 110.3° |
| N1 | C1' | H1' | 110.9° | 110.3° |
| C2 | N1 | C6 | 119.6° | 120.6° |
| N1 | C2 | O2 | 119.4° | 119.5° |
| N1 | C2 | N3 | 121.3° | 120.9° |
| N1 | C6 | C5 | 120.6° | 119.7° |
| N1 | C6 | H6 | 119.7° | 120.2° |
| O2 | C2 | N3 | 119.3° | 119.6° |
| C2 | N3 | C4 | 122.9° | 120.3° |
| C2 | N3 | HN3 | 118.5° | 119.8° |
| N3 | C4 | C5 | 118.1° | 119.4° |
| N3 | C4 | O4 | 120.3° | 120.3° |
| C4 | N3 | HN3 | 118.6° | 119.9° |
| C5 | C4 | O4 | 121.6° | 120.3° |
| C4 | C5 | C6 | 117.1° | 119.1° |
| C4 | C5 | H5 | 121.4° | 120.5° |
| C6 | C5 | H5 | 121.4° | 120.4° |
| C5 | C6 | H6 | 119.7° | 120.2° |
| C2' | C1' | O4' | 102.9° | 105.3° |
| C2' | C1' | H1' | 110.3° | 110.3° |
| C1' | C2' | O2A | 102.5° | 103.8° |
| C1' | C2' | C3' | 101.1° | 99.1° |
| C1' | C2' | H2' | 115.8° | 116.4° |
| O4' | C1' | H1' | 111.6° | 110.3° |
| C1' | O4' | C4' | 106.2° | 107.0° |
| O2A | C2' | C3' | 101.6° | 101.2° |
| O2A | C2' | H2' | 117.4° | 117.0° |
| C2' | O2A | C6' | 108.2° | 107.0° |
| C3' | C2' | H2' | 116.0° | 116.6° |
| C2' | C3' | O3' | 113.7° | 112.6° |
| C2' | C3' | C4' | 92.6° | 93.2° |
| C2' | C3' | H3' | 111.9° | 112.6° |
| O2A | C6' | C4' | 99.7° | 105.3° |
| O2A | C6' | C7' | 112.2° | 110.3° |
| O2A | C6' | H6' | 110.6° | 110.3° |
| O3' | C3' | C4' | 111.8° | 112.6° |
| O3' | C3' | H3' | 113.1° | 112.1° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 112.1° | 112.6° |
| C3' | C4' | C6' | 101.2° | 99.0° |
| C3' | C4' | C5' | 116.5° | 116.7° |
| C3' | C4' | O4' | 102.8° | 101.2° |
| C6' | C4' | C5' | 114.3° | 116.5° |
| C6' | C4' | O4' | 108.2° | 103.8° |
| C4' | C6' | C7' | 114.1° | 110.3° |
| C4' | C6' | H6' | 110.0° | 110.3° |
| C5' | C4' | O4' | 112.5° | 116.9° |
| C4' | C5' | O5' | 108.4° | 109.5° |
| C4' | C5' | H5' | 109.8° | 109.4° |
| C4' | C5' | H5'A | 109.7° | 109.5° |
| O5' | C5' | H5' | 109.7° | 109.5° |
| O5' | C5' | H5'A | 109.7° | 109.5° |
| H5' | C5' | H5'A | 109.5° | 109.5° |
| C7' | C6' | H6' | 109.8° | 110.3° |
| C6' | C7' | H7' | 109.5° | 109.5° |
| C6' | C7' | H7'A | 109.5° | 109.5° |
| C6' | C7' | H7'B | 109.5° | 109.4° |
| H7' | C7' | H7'A | 109.5° | 109.5° |
| H7' | C7' | H7'B | 109.5° | 109.5° |
| H7'A | C7' | H7'B | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | P | O1P | O2P | 120.7° | 120.0° |
| O5' | P | O1P | O3P | 113.1° | 120.0° |
| O5' | P | O2P | O3P | 114.3° | 120.0° |
| O5' | P | O2P | HO2P | 122.4° | 60.0° |
| O5' | P | O3P | HO3P | 116.8° | 180.0° |
| P | O5' | C5' | C4' | 156.9° | 180.0° |
| P | O5' | C5' | H5' | 37.0° | 60.0° |
| P | O5' | C5' | H5'A | 83.3° | 60.0° |
| O1P | P | O2P | O3P | 123.2° | 120.0° |
| O1P | P | O2P | HO2P | 0.0° | 180.0° |
| O1P | P | O3P | HO3P | 0.0° | 60.0° |
| O1P | P | O5' | C5' | 44.4° | 55.0° |
| O2P | P | O3P | HO3P | 127.4° | 60.0° |
| O2P | P | O5' | C5' | 169.7° | 65.0° |
| O3P | P | O2P | HO2P | 123.2° | 60.0° |
| O3P | P | O5' | C5' | 70.4° | 175.0° |
| C1' | N1 | C2 | C6 | 176.5° | 179.8° |
| C1' | N1 | C2 | O2 | 3.9° | 0.2° |
| C1' | N1 | C2 | N3 | 173.9° | 179.7° |
| C1' | N1 | C6 | C5 | 179.8° | 179.7° |
| C1' | N1 | C6 | H6 | 0.2° | 0.2° |
| N1 | C1' | C2' | O4' | 116.6° | 118.9° |
| N1 | C1' | C2' | H1' | 124.2° | 122.0° |
| N1 | C1' | O4' | H1' | 122.6° | 122.0° |
| N1 | C1' | C2' | O2A | 172.9° | 169.2° |
| N1 | C1' | C2' | C3' | 82.4° | 86.8° |
| N1 | C1' | C2' | H2' | 43.8° | 39.1° |
| N1 | C1' | O4' | C4' | 119.8° | 122.3° |
| N1 | C2 | O2 | N3 | 177.9° | 179.9° |
| N1 | C2 | N3 | C4 | 6.2° | 0.0° |
| C2 | N1 | C6 | C5 | 3.4° | 0.1° |
| C2 | N1 | C6 | H6 | 176.6° | 180.0° |
| C2 | N1 | C1' | C2' | 86.3° | 85.7° |
| C2 | N1 | C1' | O4' | 160.6° | 158.4° |
| C2 | N1 | C1' | H1' | 37.6° | 36.4° |
| N1 | C2 | N3 | HN3 | 173.8° | 179.9° |
| C6 | N1 | C2 | O2 | 179.5° | 180.0° |
| C6 | N1 | C2 | N3 | 2.7° | 0.1° |
| N1 | C6 | C5 | C4 | 5.8° | 0.1° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | H5 | 174.2° | 180.0° |
| C6 | N1 | C1' | C2' | 97.3° | 94.5° |
| C6 | N1 | C1' | O4' | 15.8° | 21.3° |
| C6 | N1 | C1' | H1' | 138.9° | 143.4° |
| O2 | C2 | N3 | C4 | 176.0° | 180.0° |
| O2 | C2 | N3 | HN3 | 4.0° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | C5 | 3.4° | 0.0° |
| C2 | N3 | C4 | O4 | 176.0° | 180.0° |
| N3 | C4 | C5 | O4 | 179.4° | 180.0° |
| N3 | C4 | C5 | C6 | 2.5° | 0.0° |
| N3 | C4 | C5 | H5 | 177.5° | 180.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 174.2° | 179.9° |
| C5 | C4 | N3 | HN3 | 176.6° | 179.9° |
| O4 | C4 | C5 | C6 | 178.1° | 180.0° |
| O4 | C4 | C5 | H5 | 1.9° | 0.1° |
| O4 | C4 | N3 | HN3 | 4.0° | 0.0° |
| H5 | C5 | C6 | H6 | 5.8° | 0.1° |
| C2' | C1' | O4' | H1' | 118.3° | 119.0° |
| C1' | C2' | O2A | C3' | 104.3° | 102.4° |
| C1' | C2' | O2A | H2' | 128.1° | 129.8° |
| C1' | C2' | C3' | H2' | 126.1° | 125.7° |
| C1' | C2' | O2A | C6' | 74.3° | 64.6° |
| C1' | C2' | C3' | O3' | 167.9° | 167.2° |
| C1' | C2' | C3' | C4' | 52.7° | 51.1° |
| C1' | C2' | C3' | H3' | 62.4° | 64.9° |
| C2' | C1' | O4' | C4' | 0.7° | 3.3° |
| O4' | C1' | C2' | O2A | 70.5° | 71.8° |
| O4' | C1' | C2' | C3' | 34.2° | 32.1° |
| O4' | C1' | C2' | H2' | 160.4° | 158.0° |
| C1' | O4' | C4' | C3' | 35.9° | 37.8° |
| C1' | O4' | C4' | C6' | 70.7° | 64.5° |
| C1' | O4' | C4' | C5' | 162.0° | 165.7° |
| H1' | C1' | C2' | O2A | 48.7° | 47.2° |
| H1' | C1' | C2' | C3' | 153.4° | 151.1° |
| H1' | C1' | C2' | H2' | 80.4° | 83.0° |
| H1' | C1' | O4' | C4' | 117.6° | 115.7° |
| O2A | C2' | C3' | H2' | 128.5° | 128.1° |
| O2A | C2' | C3' | O3' | 62.5° | 61.0° |
| O2A | C2' | C3' | C4' | 52.7° | 55.1° |
| O2A | C2' | C3' | H3' | 167.8° | 171.1° |
| C2' | O2A | C6' | C4' | 6.4° | 3.3° |
| C2' | O2A | C6' | C7' | 127.5° | 115.7° |
| C2' | O2A | C6' | H6' | 109.5° | 122.3° |
| C3' | C2' | O2A | C6' | 30.0° | 37.8° |
| C2' | C3' | O3' | C4' | 103.3° | 103.7° |
| C2' | C3' | O3' | H3' | 129.0° | 128.1° |
| C2' | C3' | C4' | H3' | 114.9° | 116.0° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C2' | C3' | C4' | C6' | 57.5° | 51.0° |
| C2' | C3' | C4' | C5' | 177.9° | 176.9° |
| C2' | C3' | C4' | O4' | 54.4° | 55.1° |
| H2' | C2' | O2A | C6' | 157.6° | 165.7° |
| H2' | C2' | C3' | O3' | 66.0° | 67.1° |
| H2' | C2' | C3' | C4' | 178.8° | 176.9° |
| H2' | C2' | C3' | H3' | 63.7° | 60.8° |
| O2A | C6' | C4' | C3' | 41.0° | 32.1° |
| O2A | C6' | C4' | C7' | 119.8° | 119.0° |
| O2A | C6' | C4' | H6' | 116.3° | 119.0° |
| O2A | C6' | C4' | C5' | 167.1° | 158.1° |
| O2A | C6' | C4' | O4' | 66.7° | 71.9° |
| O2A | C6' | C7' | H6' | 123.5° | 122.0° |
| O2A | C6' | C7' | H7' | 180.0° | 61.4° |
| O2A | C6' | C7' | H7'A | 60.0° | 178.5° |
| O2A | C6' | C7' | H7'B | 60.0° | 58.6° |
| O3' | C3' | C4' | H3' | 128.2° | 127.9° |
| O3' | C3' | C4' | C6' | 59.3° | 65.0° |
| O3' | C3' | C4' | C5' | 65.3° | 60.8° |
| O3' | C3' | C4' | O4' | 171.2° | 171.1° |
| C4' | C3' | O3' | HO3' | 76.7° | 165.2° |
| C3' | C4' | C6' | C5' | 126.1° | 126.0° |
| C3' | C4' | C6' | O4' | 107.7° | 103.9° |
| C3' | C4' | C5' | O4' | 118.4° | 119.9° |
| C3' | C4' | C5' | O5' | 52.5° | 175.0° |
| C3' | C4' | C5' | H5' | 172.3° | 55.0° |
| C3' | C4' | C5' | H5'A | 67.3° | 65.0° |
| C3' | C4' | C6' | C7' | 160.8° | 151.1° |
| C3' | C4' | C6' | H6' | 75.3° | 86.9° |
| H3' | C3' | O3' | HO3' | 50.9° | 66.7° |
| H3' | C3' | C4' | C6' | 172.4° | 167.1° |
| H3' | C3' | C4' | C5' | 63.0° | 67.1° |
| H3' | C3' | C4' | O4' | 60.6° | 61.0° |
| C6' | C4' | C5' | O4' | 124.0° | 123.5° |
| C6' | C4' | C5' | O5' | 170.1° | 58.4° |
| C6' | C4' | C5' | H5' | 70.0° | 61.6° |
| C6' | C4' | C5' | H5'A | 50.3° | 178.5° |
| C4' | C6' | C7' | H6' | 124.0° | 122.0° |
| C4' | C6' | C7' | H7' | 67.5° | 177.4° |
| C4' | C6' | C7' | H7'A | 52.5° | 62.6° |
| C4' | C6' | C7' | H7'B | 172.4° | 57.4° |
| C4' | C5' | O5' | H5' | 119.9° | 119.9° |
| C4' | C5' | O5' | H5'A | 119.8° | 120.0° |
| C4' | C5' | H5' | H5'A | 120.5° | 120.0° |
| C5' | C4' | C6' | C7' | 73.2° | 82.9° |
| C5' | C4' | C6' | H6' | 50.8° | 39.2° |
| O4' | C4' | C5' | O5' | 65.9° | 65.1° |
| O4' | C4' | C5' | H5' | 54.0° | 174.9° |
| O4' | C4' | C5' | H5'A | 174.3° | 55.0° |
| O4' | C4' | C6' | C7' | 53.1° | 47.1° |
| O4' | C4' | C6' | H6' | 177.0° | 169.2° |
| O5' | C5' | H5' | H5'A | 120.5° | 120.0° |
| C6' | C7' | H7' | H7'A | 120.0° | 120.0° |
| C6' | C7' | H7' | H7'B | 120.0° | 120.0° |
| C6' | C7' | H7'A | H7'B | 120.0° | 120.0° |
| H6' | C6' | C7' | H7' | 56.5° | 60.6° |
| H6' | C6' | C7' | H7'A | 176.5° | 59.4° |
| H6' | C6' | C7' | H7'B | 63.5° | 179.4° |
| H7' | C7' | H7'A | H7'B | 120.0° | 120.0° |
