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RBY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3'C3'sing1.43Å1.31Å
C3'C2'sing1.55Å1.65Å
C3'C4'sing1.54Å1.61Å
O2'C2'sing1.43Å1.39Å
C5'C4'sing1.53Å1.61Å
C5'O5'sing1.43Å1.39Å
C2'C1'sing1.55Å1.53Å
C4'O4'sing1.44Å1.51Å
O5'PAsing1.61Å1.65Å
O2APAdoub1.48Å1.62Å
C1'O4'sing1.44Å1.60Å
C1'N9sing1.47Å1.38Å
PACXsing1.82Å1.55Å
PAO1Asing1.61Å1.59Å
N9C4sing1.37Å1.37ÅAromatic
N9C8sing1.36Å1.39ÅAromatic
N3C4doub1.33Å1.40ÅAromatic
N3C2sing1.32Å1.34ÅAromatic
O1BPBdoub1.48Å1.70Å
O2BPBsing1.61Å1.65Å
C4C5sing1.40Å1.43ÅAromatic
CXPBsing1.82Å1.84Å
C8N7doub1.30Å1.30ÅAromatic
C2N1doub1.32Å1.34ÅAromatic
PBOR5sing1.61Å1.43Å
C5N7sing1.35Å1.37ÅAromatic
C5C6doub1.41Å1.43ÅAromatic
N1C6sing1.33Å1.32ÅAromatic
C6N6sing1.38Å1.35Å
OR5CR5sing1.43Å1.40Å
CR5CR4sing1.53Å1.42Å
OR3CR3sing1.43Å1.34Å
CR4CR3sing1.54Å1.43Å
CR4OR4sing1.44Å1.36Å
CR3CR2sing1.55Å1.43Å
OR4CR1sing1.44Å1.47Å
CR2CR1sing1.54Å1.55Å
CR2OR2sing1.43Å1.46Å
OR1CR1sing1.43Å1.43Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
C8H8sing1.08Å1.08Å
N6HN61sing0.97Å1.00Å
N6HN62sing0.97Å1.00Å
C2H2sing1.08Å1.08Å
CXHX1sing1.09Å1.10Å
CXHX2sing1.09Å1.10Å
CR5HR51sing1.09Å1.10Å
CR5HR52sing1.09Å1.10Å
OR3HOR3sing0.97Å0.95Å
CR2HR2sing1.09Å1.10Å
OR2HOR2sing0.97Å0.95Å
CR1HR1sing1.09Å1.10Å
OR1HOR1sing0.97Å0.95Å
O2BHO2Bsing0.97Å0.95Å
O1AHO1Asing0.97Å0.95Å
CR3HR3sing1.09Å1.10Å
CR4HR4sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3'C3'C2'114.6°110.5°
O3'C3'C4'116.8°110.5°
O3'C3'H3'100.4°110.6°
C3'O3'HO3'109.5°113.9°
C2'C3'C4'111.0°104.2°
C3'C2'O2'119.3°110.9°
C3'C2'C1'102.9°102.0°
C2'C3'H3'107.7°110.4°
C3'C2'H2'108.9°110.9°
C3'C4'C5'138.4°109.9°
C3'C4'O4'95.4°107.3°
C3'C4'H4'110.8°110.0°
C4'C3'H3'104.9°110.5°
O2'C2'C1'113.4°110.9°
O2'C2'H2'97.3°110.8°
C2'O2'HO2'109.5°114.0°
C4'C5'O5'88.3°109.5°
C5'C4'O4'124.0°109.9°
C4'C5'H5'1117.2°109.4°
C4'C5'H5'2121.0°109.5°
C5'C4'H4'46.5°109.8°
C5'O5'PA147.4°123.0°
O5'C5'H5'1117.3°109.4°
O5'C5'H5'2121.1°109.5°
C2'C1'O4'98.5°103.5°
C2'C1'N9109.9°110.6°
C1'C2'H2'115.5°110.9°
C2'C1'H1'115.8°110.6°
C4'O4'C1'112.4°107.0°
O4'C4'H4'141.1°109.9°
O5'PAO2A110.2°109.5°
O5'PACX103.5°109.5°
O5'PAO1A112.4°109.4°
O2APACX113.6°109.5°
O2APAO1A113.7°109.5°
O4'C1'N9108.7°110.7°
O4'C1'H1'116.9°110.6°
C1'N9C4130.1°126.4°
C1'N9C8120.0°126.2°
N9C1'H1'106.7°110.6°
CXPAO1A102.9°109.5°
PACXPB133.4°109.5°
PACXHX1102.2°109.5°
PACXHX296.7°109.5°
PAO1AHO1A109.5°114.1°
C4N9C8109.9°107.4°
N9C4N3136.9°134.9°
N9C4C5102.9°106.0°
N9C8N7108.9°109.9°
N9C8H8125.5°125.0°
C4N3C2119.3°120.6°
N3C4C5120.2°119.1°
N3C2N1121.1°122.5°
N3C2H2119.4°118.8°
O1BPBO2B112.1°109.5°
O1BPBCX72.3°109.4°
O1BPBOR5108.1°109.4°
O2BPBCX122.6°109.5°
O2BPBOR5116.9°109.5°
PBO2BHO2B109.5°114.0°
C4C5N7109.6°107.1°
C4C5C6115.9°118.2°
CXPBOR5114.8°109.5°
PBCXHX1102.2°109.5°
PBCXHX296.7°109.4°
C8N7C5108.6°109.5°
N7C8H8125.6°125.0°
C2N1C6123.3°121.2°
N1C2H2119.4°118.7°
PBOR5CR5136.7°123.0°
N7C5C6134.5°134.7°
C5C6N1120.1°118.5°
C5C6N6122.1°120.8°
N1C6N6117.8°120.8°
C6N6HN61109.5°120.0°
C6N6HN62109.4°120.0°
OR5CR5CR4103.0°109.5°
OR5CR5HR51111.7°109.5°
OR5CR5HR52113.0°109.5°
CR5CR4CR390.3°110.4°
CR5CR4OR4154.2°110.4°
CR4CR5HR51111.7°109.5°
CR4CR5HR52113.1°109.4°
CR5CR4HR498.7°110.4°
OR3CR3CR4136.9°110.5°
OR3CR3CR2113.7°110.5°
CR3OR3HOR3109.5°114.0°
OR3CR3HR361.8°110.6°
CR3CR4OR4113.7°104.8°
CR4CR3CR2109.1°104.1°
CR4CR3HR378.2°110.5°
CR3CR4HR4162.7°110.4°
CR4OR4CR1104.9°105.3°
OR4CR4HR461.0°110.4°
CR3CR2CR1102.6°104.1°
CR3CR2OR2116.8°110.5°
CR3CR2HR2113.4°110.5°
CR2CR3HR3163.5°110.5°
OR4CR1CR2108.6°104.8°
OR4CR1OR1107.9°110.4°
OR4CR1HR1110.5°110.4°
CR1CR2OR2118.9°110.5°
CR2CR1OR1107.9°110.3°
CR1CR2HR2111.0°110.6°
CR2CR1HR1110.6°110.4°
OR2CR2HR294.4°110.5°
CR2OR2HOR2109.5°114.0°
OR1CR1HR1111.3°110.4°
CR1OR1HOR1109.5°113.9°
H5'1C5'H5'294.4°109.5°
HN61N6HN62109.4°119.9°
HX1CXHX2130.8°109.4°
HR51CR5HR52104.6°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3'C3'C2'C4'135.0°118.7°
O3'C3'C2'H3'110.8°122.6°
O3'C3'C4'H3'110.1°122.7°
O3'C3'C2'O2'5.2°20.4°
O3'C3'C4'C5'50.3°119.8°
O3'C3'C2'C1'121.4°97.8°
O3'C3'C4'O4'147.5°120.7°
O3'C3'C4'H4'3.3°1.2°
O3'C3'C2'H2'115.6°144.0°
C2'C3'C4'H3'116.1°118.6°
C3'C2'O2'C1'121.6°112.7°
C3'C2'O2'H2'116.6°123.7°
C2'C3'C4'C5'175.8°121.5°
C3'C2'C1'H2'118.6°118.2°
C2'C3'C4'O4'13.6°2.0°
C3'C2'C1'O4'32.5°37.0°
C3'C2'C1'N9146.0°155.6°
C2'C3'C4'H4'137.2°117.5°
C2'C3'O3'HO3'40.4°61.4°
C3'C2'O2'HO2'145.2°61.5°
C3'C2'C1'H1'93.0°81.5°
C4'C3'C2'O2'140.2°139.1°
C3'C4'C5'O4'158.4°117.8°
C3'C4'C5'H4'70.6°121.1°
C3'C4'C5'O5'119.6°175.7°
C4'C3'C2'C1'13.5°20.9°
C3'C4'O4'H4'133.3°119.5°
C3'C4'O4'C1'37.3°26.5°
C3'C4'C5'H5'1120.4°64.3°
C3'C4'C5'H5'26.2°55.7°
C4'C3'O3'HO3'91.9°176.2°
C4'C3'C2'H2'109.5°97.3°
O2'C2'C1'H2'111.1°123.6°
O2'C2'C1'O4'162.8°155.2°
O2'C2'C1'N983.7°86.2°
O2'C2'C3'H3'105.5°102.3°
O2'C2'C1'H1'37.3°36.7°
C4'C5'O5'H5'1120.0°120.0°
C4'C5'O5'H5'2125.8°120.0°
C5'C4'O4'H4'60.9°121.0°
C4'C5'O5'PA175.3°179.9°
C5'C4'O4'C1'156.9°145.9°
C4'C5'H5'1H5'2128.4°120.0°
C5'C4'C3'H3'59.7°2.8°
O5'C5'C4'O4'38.9°66.4°
C5'O5'PAO2A57.4°55.0°
C5'O5'PACX179.1°175.0°
C5'O5'PAO1A70.6°65.0°
O5'C5'H5'1H5'2128.4°120.0°
O5'C5'C4'H4'169.8°54.6°
C2'C1'O4'C4'48.2°40.0°
C2'C1'O4'N9114.4°118.5°
C2'C1'O4'H1'124.7°118.5°
C2'C1'N9H1'126.4°122.9°
C2'C1'N9C487.7°84.9°
C2'C1'N9C891.6°94.7°
C1'C2'C3'H3'127.8°139.6°
C1'C2'O2'HO2'23.6°174.1°
C4'O4'C1'N9162.6°158.6°
O4'C4'C5'H5'181.2°53.5°
O4'C4'C5'H5'2164.7°173.5°
O4'C4'C3'H3'102.4°116.7°
C4'O4'C1'H1'76.6°78.4°
O5'PAO2ACX115.5°120.0°
O5'PAO2AO1A127.2°120.0°
O5'PACXO1A117.1°119.9°
O5'PACXPB134.2°179.9°
PAO5'C5'H5'164.7°60.0°
PAO5'C5'H5'249.5°60.0°
O5'PACXHX114.2°60.0°
O5'PACXHX2120.1°60.0°
O5'PAO1AHO1A112.3°60.0°
O2APACXO1A123.4°120.1°
O2APACXPB14.8°60.0°
O2APACXHX1105.3°60.0°
O2APACXHX2120.5°180.0°
O2APAO1AHO1A121.6°180.0°
O4'C1'N9H1'126.9°123.0°
O4'C1'N9C4165.5°160.9°
O4'C1'N9C815.2°19.4°
C1'O4'C4'H4'96.0°93.1°
O4'C1'C2'H2'86.1°81.2°
C1'N9C4C8179.4°179.7°
C1'N9C4N31.4°0.8°
C1'N9C4C5178.4°179.9°
C1'N9C8N7178.4°180.0°
N9C1'C2'H2'27.4°37.4°
C1'N9C8H81.6°0.0°
PACXPBO1B120.5°60.0°
PACXPBO2B15.3°60.0°
PACXPBHX1120.0°120.1°
PACXPBHX2105.7°120.0°
PACXPBOR5137.3°180.0°
PACXHX1HX2110.0°120.1°
CXPAO1AHO1A1.7°59.9°
O1APACXPB108.6°60.0°
O1APACXHX1131.3°179.9°
O1APACXHX22.9°59.9°
N9C4N3C5179.8°179.0°
N9C4N3C2179.6°179.6°
C4N9C8N71.0°0.3°
N9C4C5N70.7°0.4°
N9C4C5C6179.1°179.8°
C4N9C1'H1'38.6°37.9°
C4N9C8H8179.0°179.7°
C8N9C4N3179.2°179.5°
C8N9C4C51.0°0.4°
N9C8N7H8180.0°180.0°
N9C8N7C50.6°0.0°
C8N9C1'H1'142.1°142.4°
C4N3C2N10.5°0.3°
N3C4C5N7179.5°179.7°
N3C4C5C60.7°0.5°
C4N3C2H2179.5°179.7°
C2N3C4C50.1°0.6°
N3C2N1H2180.0°180.0°
N3C2N1C60.5°0.0°
O1BPBO2BCX82.5°120.0°
O1BPBO2BOR5125.5°120.0°
O1BPBCXOR5102.2°120.0°
O1BPBOR5CR5176.2°55.0°
O1BPBCXHX10.5°60.1°
O1BPBCXHX2133.8°180.0°
O1BPBO2BHO2B36.5°180.0°
O2BPBCXOR5152.5°120.1°
O2BPBOR5CR556.3°65.0°
O2BPBCXHX1104.8°180.0°
O2BPBCXHX2121.0°60.0°
C4C5N7C80.1°0.3°
C4C5N7C6179.7°179.8°
C4C5C6N10.7°0.3°
C4C5C6N6178.7°179.7°
CXPBOR5CR597.8°175.0°
PBCXHX1HX2110.0°119.9°
CXPBO2BHO2B46.0°60.0°
C8N7C5C6179.7°180.0°
C2N1C6C50.1°0.0°
C2N1C6N6179.3°180.0°
PBOR5CR5CR4179.0°180.0°
OR5PBCXHX1102.7°59.9°
OR5PBCXHX231.5°60.0°
PBOR5CR5HR5159.0°60.0°
PBOR5CR5HR5258.6°60.0°
OR5PBO2BHO2B162.1°60.0°
N7C5C6N1179.6°180.0°
N7C5C6N61.0°0.0°
C5N7C8H8179.4°180.0°
C5C6N1N6179.4°180.0°
C5C6N6HN61106.1°0.0°
C5C6N6HN62134.0°179.9°
N1C6N6HN6173.3°179.9°
N1C6N6HN6246.6°0.0°
C6N1C2H2179.4°180.0°
C6N6HN61HN62120.0°179.9°
OR5CR5CR4HR51120.0°120.0°
OR5CR5CR4HR52122.3°120.0°
OR5CR5CR4CR395.4°175.0°
OR5CR5CR4OR463.4°69.7°
OR5CR5HR51HR52122.6°120.0°
OR5CR5CR4HR499.5°52.7°
CR5CR4CR3OR33.1°24.1°
CR5CR4CR3OR4170.1°118.8°
CR5CR4CR3HR4121.7°122.3°
CR5CR4OR4HR441.7°122.3°
CR5CR4CR3CR2177.0°142.8°
CR5CR4OR4CR1167.5°159.3°
CR4CR5HR51HR52122.6°120.0°
CR5CR4CR3HR318.4°98.6°
OR3CR3CR4CR2173.9°118.6°
OR3CR3CR4HR321.5°122.7°
OR3CR3CR4OR4167.0°94.7°
OR3CR3CR2HR370.5°122.7°
OR3CR3CR2CR1175.7°118.7°
OR3CR3CR2OR252.3°122.7°
OR3CR3CR2HR256.0°0.0°
OR3CR3CR4HR4124.8°146.4°
CR3CR4OR4HR4161.6°118.9°
CR4CR3CR2HR3114.1°118.6°
CR3CR4OR4CR110.8°40.5°
CR4CR3CR2CR10.3°0.0°
CR4CR3CR2OR2132.2°118.7°
CR3CR4CR5HR5124.7°65.0°
CR3CR4CR5HR52142.3°55.0°
CR4CR3OR3HOR3133.6°179.9°
CR4CR3CR2HR2119.5°118.7°
OR4CR4CR3CR26.9°24.0°
CR4OR4CR1CR210.5°40.5°
CR4OR4CR1OR1127.2°159.3°
OR4CR4CR5HR51176.6°50.4°
OR4CR4CR5HR5258.9°170.3°
CR4OR4CR1HR1110.9°78.3°
OR4CR4CR3HR3171.5°142.6°
CR3CR2CR1OR46.6°24.0°
CR3CR2CR1OR2130.7°118.6°
CR3CR2CR1HR2121.4°118.7°
CR3CR2OR2HR2119.1°122.6°
CR3CR2CR1OR1123.3°142.8°
CR2CR3OR3HOR352.8°65.4°
CR3CR2OR2HOR2139.4°180.0°
CR3CR2CR1HR1114.8°94.9°
CR2CR3CR4HR461.3°94.9°
OR4CR1CR2OR1116.7°118.8°
OR4CR1CR2HR1121.4°118.9°
OR4CR1CR2OR2137.3°142.6°
OR4CR1OR1HR1121.4°122.4°
OR4CR1CR2HR2114.8°94.7°
OR4CR1OR1HOR1145.8°61.5°
CR1OR4CR4HR4150.8°78.3°
CR1CR2OR2HR2116.9°122.7°
CR2CR1OR1HR1121.4°122.3°
CR1CR2OR2HOR215.4°65.4°
CR2CR1OR1HOR197.0°176.8°
CR1CR2CR3HR3113.8°118.6°
OR2CR2CR1OR1106.0°98.5°
OR2CR2CR1HR115.9°23.8°
OR2CR2CR3HR318.2°0.1°
OR1CR1CR2HR21.9°24.2°
H5'1C5'C4'H4'49.8°174.5°
H5'2C5'C4'H4'64.4°65.5°
H4'C4'C3'H3'106.8°123.9°
H3'C3'O3'HO3'155.5°61.2°
H3'C3'C2'H2'4.8°21.4°
H2'C2'O2'HO2'98.2°62.2°
H2'C2'C1'H1'148.4°160.3°
HR51CR5CR4HR4140.5°172.7°
HR52CR5CR4HR422.9°67.3°
HOR3OR3CR3HR3109.5°57.3°
HR2CR2OR2HOR2101.5°57.4°
HR2CR2CR1HR1123.7°146.4°
HR2CR2CR3HR3126.5°122.7°
HR1CR1OR1HOR124.4°60.9°
HR3CR3CR4HR4103.3°23.7°

223532

PDB entries from 2024-08-07

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