RBD
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OG | CG | sing | 1.43Å | 1.42Å | |
| CD | CG | sing | 1.54Å | 1.52Å | |
| CD | N6 | sing | 1.49Å | 1.47Å | |
| CG | CB | sing | 1.54Å | 1.54Å | |
| CB | OB | sing | 1.43Å | 1.42Å | |
| CB | CA | sing | 1.54Å | 1.53Å | |
| N6 | C6 | sing | 1.38Å | 1.34Å | |
| N6 | CA | sing | 1.49Å | 1.46Å | |
| C6 | C5 | doub | 1.40Å | 1.41Å | Aromatic |
| C6 | N1 | sing | 1.33Å | 1.35Å | Aromatic |
| N7 | C5 | sing | 1.35Å | 1.40Å | Aromatic |
| N7 | C8 | doub | 1.30Å | 1.30Å | Aromatic |
| C5 | C4 | sing | 1.41Å | 1.37Å | Aromatic |
| N1 | C2 | doub | 1.32Å | 1.33Å | Aromatic |
| C8 | N9 | sing | 1.36Å | 1.38Å | Aromatic |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C4 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
| C4 | N3 | doub | 1.33Å | 1.36Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.33Å | Aromatic |
| N9 | C1' | sing | 1.46Å | 1.48Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.55Å | 1.54Å | |
| O2P | P | sing | 1.72Å | 1.48Å | |
| O4' | C4' | sing | 1.44Å | 1.43Å | |
| O5' | P | sing | 1.72Å | 1.62Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| P | O1P | sing | 1.72Å | 1.49Å | |
| O1P | H1 | sing | 0.97Å | 0.95Å | |
| O2P | H3 | sing | 0.97Å | 0.95Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| CA | HA2 | sing | 1.09Å | 1.10Å | |
| CA | HA1 | sing | 1.09Å | 1.10Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| OB | HOB | sing | 0.97Å | 0.95Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| OG | HOG | sing | 0.97Å | 0.95Å | |
| CD | HD1 | sing | 1.09Å | 1.10Å | |
| CD | HD2 | sing | 1.09Å | 1.10Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| O3' | H4 | sing | 0.97Å | 0.95Å | |
| P | O3P | sing | 1.72Å | 21.85Å | |
| P | H5 | sing | 1.47Å | 21.85Å | |
| O3P | H6 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OG | CG | CD | 110.3° | 110.4° |
| OG | CG | CB | 112.9° | 110.3° |
| OG | CG | HG | 111.7° | 110.3° |
| CG | OG | HOG | 109.5° | 114.0° |
| CG | CD | N6 | 100.6° | 104.6° |
| CD | CG | CB | 101.2° | 105.1° |
| CD | CG | HG | 110.2° | 110.3° |
| CG | CD | HD1 | 111.6° | 110.4° |
| CG | CD | HD2 | 111.7° | 110.4° |
| CD | N6 | C6 | 119.5° | 111.0° |
| CD | N6 | CA | 112.5° | 104.2° |
| N6 | CD | HD1 | 111.7° | 110.4° |
| N6 | CD | HD2 | 111.6° | 110.4° |
| CG | CB | OB | 111.5° | 110.3° |
| CG | CB | CA | 102.4° | 105.0° |
| CG | CB | HB | 108.8° | 110.5° |
| CB | CG | HG | 110.0° | 110.3° |
| OB | CB | CA | 114.4° | 110.3° |
| OB | CB | HB | 110.5° | 110.3° |
| CB | OB | HOB | 109.5° | 114.0° |
| CB | CA | N6 | 102.5° | 104.6° |
| CB | CA | HA2 | 111.2° | 110.4° |
| CB | CA | HA1 | 111.2° | 110.5° |
| CA | CB | HB | 108.9° | 110.3° |
| C6 | N6 | CA | 123.8° | 111.0° |
| N6 | C6 | C5 | 123.7° | 120.8° |
| N6 | C6 | N1 | 116.7° | 120.7° |
| N6 | CA | HA2 | 111.2° | 110.4° |
| N6 | CA | HA1 | 111.2° | 110.4° |
| C5 | C6 | N1 | 119.5° | 118.5° |
| C6 | C5 | N7 | 133.9° | 134.7° |
| C6 | C5 | C4 | 115.0° | 118.2° |
| C6 | N1 | C2 | 118.7° | 121.1° |
| C5 | N7 | C8 | 103.0° | 109.5° |
| N7 | C5 | C4 | 111.1° | 107.1° |
| N7 | C8 | N9 | 114.4° | 110.0° |
| N7 | C8 | H8 | 122.8° | 125.1° |
| C5 | C4 | N9 | 105.9° | 106.0° |
| C5 | C4 | N3 | 127.1° | 119.0° |
| N1 | C2 | N3 | 128.1° | 122.5° |
| N1 | C2 | H2 | 115.9° | 118.8° |
| C8 | N9 | C4 | 105.4° | 107.5° |
| C8 | N9 | C1' | 129.4° | 126.3° |
| N9 | C8 | H8 | 122.8° | 125.0° |
| C1' | C2' | C3' | 102.1° | 104.3° |
| C2' | C1' | N9 | 114.1° | 110.0° |
| C2' | C1' | O4' | 107.5° | 107.3° |
| C2' | C1' | H1' | 107.6° | 109.9° |
| C1' | C2' | H2'1 | 111.3° | 110.5° |
| C1' | C2' | H2'2 | 111.2° | 110.5° |
| C2' | C3' | O3' | 111.8° | 111.1° |
| C2' | C3' | C4' | 101.3° | 102.0° |
| C2' | C3' | H3' | 110.5° | 110.8° |
| C3' | C2' | H2'1 | 111.3° | 110.3° |
| C3' | C2' | H2'2 | 111.3° | 110.6° |
| N9 | C4 | N3 | 126.9° | 135.0° |
| C4 | N9 | C1' | 124.9° | 126.2° |
| C4 | N3 | C2 | 111.5° | 120.7° |
| N3 | C2 | H2 | 115.9° | 118.7° |
| N9 | C1' | O4' | 110.1° | 109.9° |
| N9 | C1' | H1' | 108.3° | 109.9° |
| C1' | O4' | C4' | 108.6° | 107.0° |
| O4' | C1' | H1' | 109.1° | 109.9° |
| O3' | C3' | C4' | 110.2° | 110.9° |
| O3' | C3' | H3' | 112.1° | 110.8° |
| C3' | O3' | H4 | 109.5° | 114.0° |
| C3' | C4' | O4' | 108.6° | 103.6° |
| C3' | C4' | C5' | 113.3° | 110.6° |
| C3' | C4' | H4' | 108.0° | 110.6° |
| C4' | C3' | H3' | 110.3° | 110.9° |
| O2P | P | O5' | 108.2° | 120.0° |
| O2P | P | O1P | 118.5° | 90.0° |
| P | O2P | H3 | 109.5° | 113.9° |
| O2P | P | O3P | 51.4° | 90.0° |
| O2P | P | H5 | 51.4° | 120.0° |
| O4' | C4' | C5' | 109.4° | 110.6° |
| O4' | C4' | H4' | 109.4° | 110.6° |
| P | O5' | C5' | 121.8° | 114.0° |
| O5' | P | O1P | 108.5° | 90.0° |
| O5' | P | O3P | 56.8° | 90.0° |
| O5' | P | H5 | 56.8° | 120.0° |
| O5' | C5' | C4' | 113.1° | 109.5° |
| O5' | C5' | H5'2 | 108.6° | 109.5° |
| O5' | C5' | H5'1 | 108.5° | 109.4° |
| C4' | C5' | H5'2 | 108.6° | 109.5° |
| C4' | C5' | H5'1 | 108.6° | 109.5° |
| C5' | C4' | H4' | 108.0° | 110.6° |
| P | O1P | H1 | 109.5° | 114.0° |
| O1P | P | O3P | 133.2° | 180.0° |
| O1P | P | H5 | 133.2° | 90.0° |
| H5'2 | C5' | H5'1 | 109.5° | 109.4° |
| HA2 | CA | HA1 | 109.5° | 110.4° |
| HD1 | CD | HD2 | 109.5° | 110.5° |
| H2'1 | C2' | H2'2 | 109.5° | 110.6° |
| O3P | P | H5 | 0.0° | 90.0° |
| P | O3P | H6 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OG | CG | CD | CB | 119.8° | 118.9° |
| OG | CG | CD | HG | 123.8° | 122.2° |
| OG | CG | CD | N6 | 161.5° | 95.1° |
| OG | CG | CB | HG | 125.5° | 122.1° |
| OG | CG | CB | OB | 75.2° | 122.2° |
| OG | CG | CB | CA | 162.0° | 119.0° |
| OG | CG | CB | HB | 46.9° | 0.0° |
| OG | CG | CD | HD1 | 42.9° | 146.2° |
| OG | CG | CD | HD2 | 80.0° | 23.7° |
| CG | CD | N6 | HD1 | 118.5° | 118.8° |
| CG | CD | N6 | HD2 | 118.6° | 118.8° |
| CD | CG | CB | HG | 116.6° | 118.9° |
| CD | CG | CB | OB | 166.9° | 118.9° |
| CD | CG | CB | CA | 44.1° | 0.0° |
| CG | CD | N6 | C6 | 132.5° | 159.0° |
| CG | CD | N6 | CA | 25.3° | 39.5° |
| CD | CG | CB | HB | 71.0° | 118.9° |
| CD | CG | OG | HOG | 180.0° | 64.4° |
| CG | CD | HD1 | HD2 | 124.1° | 122.4° |
| N6 | CD | CG | CB | 41.7° | 23.8° |
| CD | N6 | CA | CB | 2.0° | 39.5° |
| CD | N6 | C6 | CA | 155.3° | 115.5° |
| CD | N6 | C6 | C5 | 58.7° | 64.6° |
| CD | N6 | C6 | N1 | 117.7° | 115.4° |
| CD | N6 | CA | HA2 | 116.8° | 158.2° |
| CD | N6 | CA | HA1 | 120.9° | 79.4° |
| N6 | CD | CG | HG | 74.7° | 142.7° |
| N6 | CD | HD1 | HD2 | 124.1° | 122.4° |
| CG | CB | OB | CA | 115.6° | 115.6° |
| CG | CB | OB | HB | 121.1° | 122.3° |
| CG | CB | CA | HB | 115.1° | 119.0° |
| CG | CB | CA | N6 | 28.4° | 23.9° |
| CG | CB | CA | HA2 | 90.5° | 142.6° |
| CG | CB | CA | HA1 | 147.2° | 95.0° |
| CG | CB | OB | HOB | 180.0° | 177.0° |
| CB | CG | OG | HOG | 67.5° | 180.0° |
| CB | CG | CD | HD1 | 76.9° | 95.0° |
| CB | CG | CD | HD2 | 160.2° | 142.6° |
| OB | CB | CA | HB | 124.1° | 122.1° |
| OB | CB | CA | N6 | 149.1° | 142.7° |
| OB | CB | CA | HA2 | 30.2° | 98.5° |
| OB | CB | CA | HA1 | 92.0° | 23.9° |
| OB | CB | CG | HG | 50.3° | 0.0° |
| CB | CA | N6 | C6 | 158.8° | 159.1° |
| CB | CA | N6 | HA2 | 118.9° | 118.8° |
| CB | CA | N6 | HA1 | 118.9° | 118.9° |
| CB | CA | HA2 | HA1 | 123.3° | 122.5° |
| CA | CB | OB | HOB | 64.5° | 61.4° |
| CA | CB | CG | HG | 72.5° | 118.9° |
| N6 | C6 | C5 | N1 | 176.3° | 180.0° |
| N6 | C6 | C5 | N7 | 5.0° | 0.0° |
| N6 | C6 | C5 | C4 | 173.1° | 179.8° |
| N6 | C6 | N1 | C2 | 174.2° | 180.0° |
| C6 | N6 | CA | HA2 | 39.9° | 82.2° |
| C6 | N6 | CA | HA1 | 82.3° | 40.2° |
| C6 | N6 | CD | HD1 | 108.9° | 40.3° |
| C6 | N6 | CD | HD2 | 14.0° | 82.2° |
| CA | N6 | C6 | C5 | 96.6° | 180.0° |
| CA | N6 | C6 | N1 | 87.1° | 0.0° |
| N6 | CA | HA2 | HA1 | 123.2° | 122.4° |
| N6 | CA | CB | HB | 86.7° | 95.2° |
| CA | N6 | CD | HD1 | 93.2° | 79.3° |
| CA | N6 | CD | HD2 | 143.9° | 158.3° |
| C6 | C5 | N7 | C4 | 178.1° | 179.8° |
| C6 | C5 | N7 | C8 | 177.4° | 180.0° |
| C5 | C6 | N1 | C2 | 2.3° | 0.0° |
| C6 | C5 | C4 | N9 | 176.3° | 179.8° |
| C6 | C5 | C4 | N3 | 1.6° | 0.5° |
| N1 | C6 | C5 | N7 | 178.8° | 180.0° |
| N1 | C6 | C5 | C4 | 3.2° | 0.2° |
| C6 | N1 | C2 | N3 | 0.5° | 0.1° |
| C6 | N1 | C2 | H2 | 179.5° | 180.0° |
| C5 | N7 | C8 | N9 | 1.2° | 0.0° |
| N7 | C5 | C4 | N9 | 2.2° | 0.4° |
| N7 | C5 | C4 | N3 | 179.9° | 179.6° |
| C5 | N7 | C8 | H8 | 178.8° | 180.0° |
| C8 | N7 | C5 | C4 | 0.7° | 0.2° |
| N7 | C8 | N9 | H8 | 180.0° | 180.0° |
| N7 | C8 | N9 | C4 | 2.6° | 0.2° |
| N7 | C8 | N9 | C1' | 172.5° | 180.0° |
| C5 | C4 | N9 | C8 | 2.8° | 0.4° |
| C5 | C4 | N9 | N3 | 177.9° | 179.1° |
| C5 | C4 | N3 | C2 | 0.9° | 0.6° |
| C5 | C4 | N9 | C1' | 172.6° | 179.9° |
| N1 | C2 | N3 | C4 | 2.0° | 0.3° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| C8 | N9 | C1' | C2' | 27.6° | 94.3° |
| C8 | N9 | C4 | C1' | 175.4° | 179.7° |
| C8 | N9 | C4 | N3 | 179.4° | 179.5° |
| C8 | N9 | C1' | O4' | 93.4° | 23.6° |
| C8 | N9 | C1' | H1' | 147.4° | 144.6° |
| C1' | C2' | C3' | H2'1 | 118.8° | 118.6° |
| C1' | C2' | C3' | H2'2 | 118.8° | 118.7° |
| C2' | C1' | N9 | C4 | 146.6° | 85.3° |
| C2' | C1' | N9 | O4' | 121.0° | 117.9° |
| C2' | C1' | N9 | H1' | 119.8° | 121.1° |
| C2' | C1' | O4' | H1' | 116.4° | 119.4° |
| C1' | C2' | C3' | O3' | 84.4° | 138.9° |
| C1' | C2' | C3' | C4' | 32.9° | 20.7° |
| C2' | C1' | O4' | C4' | 15.5° | 26.5° |
| C1' | C2' | C3' | H3' | 149.9° | 97.5° |
| C1' | C2' | H2'1 | H2'2 | 123.4° | 122.6° |
| C3' | C2' | C1' | N9 | 153.6° | 121.7° |
| C3' | C2' | C1' | O4' | 31.2° | 2.2° |
| C2' | C3' | O3' | C4' | 111.9° | 112.7° |
| C2' | C3' | O3' | H3' | 124.8° | 123.6° |
| C2' | C3' | C4' | H3' | 117.1° | 118.1° |
| C2' | C3' | C4' | O4' | 25.6° | 36.8° |
| C2' | C3' | C4' | C5' | 96.2° | 155.4° |
| C2' | C3' | C4' | H4' | 144.2° | 81.8° |
| C3' | C2' | C1' | H1' | 86.2° | 117.2° |
| C3' | C2' | H2'1 | H2'2 | 123.4° | 122.7° |
| C2' | C3' | O3' | H4 | 180.0° | 67.3° |
| N9 | C4 | N3 | C2 | 178.3° | 179.6° |
| C4 | N9 | C1' | O4' | 92.4° | 156.8° |
| C4 | N9 | C1' | H1' | 26.8° | 35.7° |
| C4 | N9 | C8 | H8 | 177.4° | 179.8° |
| N3 | C4 | N9 | C1' | 5.3° | 0.8° |
| C4 | N3 | C2 | H2 | 178.0° | 179.7° |
| N9 | C1' | O4' | H1' | 118.7° | 121.1° |
| N9 | C1' | O4' | C4' | 140.4° | 146.1° |
| C1' | N9 | C8 | H8 | 7.5° | 0.1° |
| N9 | C1' | C2' | H2'1 | 87.5° | 119.8° |
| N9 | C1' | C2' | H2'2 | 34.8° | 2.8° |
| C1' | O4' | C4' | C3' | 6.7° | 40.0° |
| C1' | O4' | C4' | C5' | 117.5° | 158.6° |
| C1' | O4' | C4' | H4' | 124.4° | 78.6° |
| O4' | C1' | C2' | H2'1 | 150.0° | 120.7° |
| O4' | C1' | C2' | H2'2 | 87.6° | 116.7° |
| O3' | C3' | C4' | H3' | 124.4° | 123.6° |
| O3' | C3' | C4' | O4' | 92.9° | 155.2° |
| O3' | C3' | C4' | C5' | 145.3° | 86.3° |
| O3' | C3' | C4' | H4' | 25.7° | 36.6° |
| O3' | C3' | C2' | H2'1 | 34.4° | 20.3° |
| O3' | C3' | C2' | H2'2 | 156.8° | 102.4° |
| C3' | C4' | O4' | C5' | 124.2° | 118.6° |
| C3' | C4' | O4' | H4' | 117.7° | 118.6° |
| C3' | C4' | C5' | O5' | 60.8° | 177.2° |
| C3' | C4' | C5' | H4' | 119.6° | 122.9° |
| C3' | C4' | C5' | H5'2 | 59.8° | 62.8° |
| C3' | C4' | C5' | H5'1 | 178.7° | 57.2° |
| C4' | C3' | C2' | H2'1 | 151.7° | 98.0° |
| C4' | C3' | C2' | H2'2 | 85.9° | 139.4° |
| C4' | C3' | O3' | H4 | 68.1° | 180.0° |
| O2P | P | O5' | O1P | 129.8° | 90.0° |
| O2P | P | O5' | O3P | 0.2° | 90.0° |
| O2P | P | O5' | H5 | 0.2° | 180.0° |
| O2P | P | O5' | C5' | 175.9° | 0.0° |
| O2P | P | O1P | O3P | 62.3° | 80.2° |
| O2P | P | O1P | H5 | 62.3° | 120.0° |
| O2P | P | O1P | H1 | 180.0° | 160.7° |
| O2P | P | O3P | H5 | 90.0° | 120.0° |
| O2P | P | O3P | H6 | 90.0° | 60.0° |
| O4' | C4' | C5' | O5' | 60.6° | 68.6° |
| O4' | C4' | C5' | H4' | 119.0° | 122.9° |
| O4' | C4' | C5' | H5'2 | 178.9° | 51.4° |
| O4' | C4' | C5' | H5'1 | 59.9° | 171.4° |
| C4' | O4' | C1' | H1' | 101.0° | 92.9° |
| O4' | C4' | C3' | H3' | 142.7° | 81.2° |
| P | O5' | C5' | C4' | 171.0° | 175.4° |
| O5' | P | O1P | O3P | 61.6° | 159.8° |
| O5' | P | O1P | H5 | 61.6° | 120.0° |
| O5' | P | O1P | H1 | 56.1° | 79.3° |
| O5' | P | O2P | H3 | 180.0° | 90.0° |
| P | O5' | C5' | H5'2 | 68.5° | 64.6° |
| P | O5' | C5' | H5'1 | 50.4° | 55.4° |
| O5' | P | O3P | H5 | 90.0° | 120.0° |
| O5' | P | O3P | H6 | 90.0° | 180.0° |
| O5' | C5' | C4' | H5'2 | 120.6° | 120.1° |
| O5' | C5' | C4' | H5'1 | 120.5° | 120.0° |
| C5' | O5' | P | O1P | 54.3° | 90.0° |
| O5' | C5' | H5'2 | H5'1 | 118.3° | 120.0° |
| O5' | C5' | C4' | H4' | 179.6° | 54.3° |
| C5' | O5' | P | O3P | 175.7° | 90.0° |
| C5' | O5' | P | H5 | 175.7° | 180.0° |
| C4' | C5' | H5'2 | H5'1 | 118.4° | 120.0° |
| C5' | C4' | C3' | H3' | 20.9° | 37.3° |
| O1P | P | O2P | H3 | 56.0° | 180.0° |
| O1P | P | O3P | H5 | 90.0° | 39.8° |
| O1P | P | O3P | H6 | 90.0° | 20.3° |
| H1 | O1P | P | O3P | 117.7° | 80.5° |
| H1 | O1P | P | H5 | 117.7° | 40.8° |
| H3 | O2P | P | O3P | 179.8° | 0.0° |
| H3 | O2P | P | H5 | 179.8° | 90.0° |
| H5'2 | C5' | C4' | H4' | 59.8° | 174.3° |
| H5'1 | C5' | C4' | H4' | 59.1° | 65.7° |
| H4' | C4' | C3' | H3' | 98.7° | 160.2° |
| H1' | C1' | C2' | H2'1 | 32.6° | 1.3° |
| H1' | C1' | C2' | H2'2 | 155.0° | 123.9° |
| HA2 | CA | CB | HB | 154.4° | 23.6° |
| HA1 | CA | CB | HB | 32.1° | 146.0° |
| HB | CB | OB | HOB | 58.8° | 60.7° |
| HB | CB | CG | HG | 172.4° | 122.2° |
| HG | CG | OG | HOG | 57.1° | 57.8° |
| HG | CG | CD | HD1 | 166.7° | 24.0° |
| HG | CG | CD | HD2 | 43.8° | 98.5° |
| H3' | C3' | C2' | H2'1 | 91.3° | 143.9° |
| H3' | C3' | C2' | H2'2 | 31.1° | 21.3° |
| H3' | C3' | O3' | H4 | 55.2° | 56.3° |
| H5 | P | O3P | H6 | 90.0° | 60.0° |
