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Summary Geometry Related PDB entries

RAT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1A	sing	1.34Å	1.26Å
O1A	HO1A	sing	0.97Å	0.95Å
C2	C1	sing	1.51Å	1.53Å
O1B	C1	doub	1.21Å	1.25Å
O2	C2	sing	1.43Å	1.44Å
C3	C2	sing	1.53Å	1.55Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C4	C3	sing	1.53Å	1.57Å
O3	C3	sing	1.43Å	1.44Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C5	C4	sing	1.51Å	1.56Å
C4	O4	sing	1.43Å	1.44Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
O5A	C5	doub	1.21Å	1.25Å
O5B	C5	sing	1.34Å	1.26Å
O5B	HO5B	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	O1A	HO1A	109.5°	117.1°
O1A	C1	C2	117.4°	120.0°
O1A	C1	O1B	125.4°	120.0°
C2	C1	O1B	117.3°	120.0°
C1	C2	O2	108.6°	109.4°
C1	C2	C3	111.5°	109.5°
C1	C2	H2	108.9°	109.5°
O2	C2	C3	110.3°	109.5°
O2	C2	H2	110.2°	109.5°
C2	O2	HO2	109.5°	114.0°
C3	C2	H2	107.2°	109.5°
C2	C3	C4	113.4°	109.4°
C2	C3	O3	109.6°	109.4°
C2	C3	H3	106.7°	109.5°
C4	C3	O3	109.5°	109.5°
C4	C3	H3	106.8°	109.5°
C3	C4	C5	113.4°	109.4°
C3	C4	O4	111.3°	109.4°
C3	C4	H4	104.9°	109.5°
O3	C3	H3	110.8°	109.5°
C3	O3	HO3	109.5°	114.1°
C5	C4	O4	107.8°	109.5°
C5	C4	H4	108.6°	109.5°
C4	C5	O5A	118.6°	120.0°
C4	C5	O5B	116.6°	120.0°
O4	C4	H4	110.8°	109.5°
C4	O4	HO4	109.5°	114.0°
O5A	C5	O5B	124.7°	120.0°
C5	O5B	HO5B	109.5°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1A	C1	C2	O1B	179.9°	180.0°
O1A	C1	C2	O2	162.2°	175.0°
O1A	C1	C2	C3	76.0°	65.0°
O1A	C1	C2	H2	42.1°	55.0°
HO1A	O1A	C1	C2	179.9°	180.0°
HO1A	O1A	C1	O1B	0.0°	0.0°
C1	C2	O2	C3	122.6°	120.0°
C1	C2	O2	H2	119.3°	120.0°
C1	C2	C3	H2	119.2°	120.0°
C1	C2	O2	HO2	50.2°	60.0°
C1	C2	C3	C4	172.8°	180.0°
C1	C2	C3	O3	64.4°	60.0°
C1	C2	C3	H3	55.6°	60.0°
O1B	C1	C2	O2	17.8°	5.0°
O1B	C1	C2	C3	104.1°	115.0°
O1B	C1	C2	H2	137.8°	125.0°
O2	C2	C3	H2	120.0°	120.0°
O2	C2	C3	C4	66.3°	60.0°
O2	C2	C3	O3	56.4°	180.0°
O2	C2	C3	H3	176.4°	60.0°
C3	C2	O2	HO2	172.8°	60.0°
C2	C3	C4	O3	122.8°	120.0°
C2	C3	C4	H3	117.2°	120.0°
C2	C3	O3	H3	117.5°	120.0°
C2	C3	O3	HO3	91.4°	60.0°
C2	C3	C4	C5	82.5°	175.0°
C2	C3	C4	O4	155.8°	55.0°
C2	C3	C4	H4	35.9°	65.0°
H2	C2	O2	HO2	69.1°	180.0°
H2	C2	C3	C4	53.7°	60.0°
H2	C2	C3	O3	176.4°	60.0°
H2	C2	C3	H3	63.6°	180.0°
C4	C3	O3	H3	117.5°	120.0°
C4	C3	O3	HO3	33.5°	59.9°
C3	C4	C5	O4	123.7°	120.0°
C3	C4	C5	H4	116.2°	120.0°
C3	C4	O4	H4	116.3°	120.0°
C3	C4	O4	HO4	129.2°	60.1°
C3	C4	C5	O5A	105.8°	115.0°
C3	C4	C5	O5B	75.1°	65.0°
O3	C3	C4	C5	40.3°	55.0°
O3	C3	C4	O4	81.4°	65.0°
O3	C3	C4	H4	158.7°	175.1°
H3	C3	O3	HO3	151.1°	179.9°
H3	C3	C4	C5	160.3°	65.0°
H3	C3	C4	O4	38.6°	175.0°
H3	C3	C4	H4	81.3°	55.0°
C5	C4	O4	H4	118.7°	120.1°
C5	C4	O4	HO4	4.3°	59.9°
C4	C5	O5A	O5B	179.0°	180.0°
C4	C5	O5B	HO5B	179.0°	180.0°
O4	C4	C5	O5A	17.9°	5.0°
O4	C4	C5	O5B	161.2°	175.0°
H4	C4	O4	HO4	114.5°	180.0°
H4	C4	C5	O5A	138.0°	125.0°
H4	C4	C5	O5B	41.1°	54.9°
O5A	C5	O5B	HO5B	0.0°	0.0°

223166

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