RAB
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5' | C5' | sing | 1.43Å | 1.43Å | |
O5' | H5' | sing | 0.97Å | 0.95Å | |
C5' | C4' | sing | 1.53Å | 1.52Å | |
C5' | H5'1 | sing | 1.09Å | 1.11Å | |
C5' | H5'2 | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.43Å | |
C4' | C3' | sing | 1.54Å | 1.49Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.43Å | |
C1' | N9 | sing | 1.47Å | 1.64Å | |
C1' | C2' | sing | 1.55Å | 1.51Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N9 | C4 | sing | 1.37Å | 1.39Å | Aromatic |
N9 | C8 | sing | 1.36Å | 1.36Å | Aromatic |
C4 | N3 | doub | 1.33Å | 1.38Å | Aromatic |
C4 | C5 | sing | 1.40Å | 1.39Å | Aromatic |
N3 | C2 | sing | 1.32Å | 1.35Å | Aromatic |
C2 | N1 | doub | 1.32Å | 1.36Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N1 | C6 | sing | 1.33Å | 1.38Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.33Å | |
C6 | C5 | doub | 1.40Å | 1.44Å | Aromatic |
N6 | HN61 | sing | 0.97Å | 1.02Å | |
N6 | HN62 | sing | 0.97Å | 1.02Å | |
C5 | N7 | sing | 1.35Å | 1.40Å | Aromatic |
N7 | C8 | doub | 1.30Å | 1.30Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C2' | C3' | sing | 1.55Å | 1.51Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | H1 | sing | 0.97Å | 0.95Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | H3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5' | O5' | H5' | 110.0° | 106.9° |
O5' | C5' | C4' | 110.0° | 109.5° |
O5' | C5' | H5'1 | 112.0° | 109.5° |
O5' | C5' | H5'2 | 112.0° | 109.5° |
C4' | C5' | H5'1 | 112.0° | 109.5° |
C4' | C5' | H5'2 | 112.0° | 109.4° |
C5' | C4' | O4' | 116.1° | 110.4° |
C5' | C4' | C3' | 114.9° | 110.5° |
C5' | C4' | H4' | 98.8° | 110.3° |
H5'1 | C5' | H5'2 | 98.4° | 109.4° |
O4' | C4' | C3' | 103.0° | 104.8° |
O4' | C4' | H4' | 111.6° | 110.4° |
C4' | O4' | C1' | 111.5° | 105.3° |
C3' | C4' | H4' | 112.9° | 110.4° |
C4' | C3' | C2' | 108.7° | 104.1° |
C4' | C3' | O3' | 106.4° | 110.5° |
C4' | C3' | H3' | 110.7° | 110.5° |
O4' | C1' | N9 | 122.4° | 110.4° |
O4' | C1' | C2' | 102.6° | 104.9° |
O4' | C1' | H1' | 105.5° | 110.4° |
N9 | C1' | C2' | 109.1° | 110.3° |
N9 | C1' | H1' | 98.6° | 110.3° |
C1' | N9 | C4 | 137.2° | 126.3° |
C1' | N9 | C8 | 116.4° | 126.3° |
C2' | C1' | H1' | 119.8° | 110.4° |
C1' | C2' | O2' | 115.2° | 110.6° |
C1' | C2' | C3' | 102.4° | 103.9° |
C1' | C2' | H2' | 111.0° | 110.7° |
C4 | N9 | C8 | 106.3° | 107.4° |
N9 | C4 | N3 | 129.0° | 134.9° |
N9 | C4 | C5 | 104.4° | 106.0° |
N9 | C8 | N7 | 115.1° | 110.0° |
N9 | C8 | H8 | 124.2° | 125.0° |
N3 | C4 | C5 | 126.6° | 119.1° |
C4 | N3 | C2 | 112.7° | 120.6° |
C4 | C5 | C6 | 116.0° | 118.2° |
C4 | C5 | N7 | 111.1° | 107.1° |
N3 | C2 | N1 | 126.9° | 122.5° |
N3 | C2 | H2 | 116.0° | 118.8° |
N1 | C2 | H2 | 117.0° | 118.7° |
C2 | N1 | C6 | 119.6° | 121.2° |
N1 | C6 | N6 | 119.8° | 120.8° |
N1 | C6 | C5 | 118.2° | 118.5° |
N6 | C6 | C5 | 122.0° | 120.8° |
C6 | N6 | HN61 | 108.5° | 120.0° |
C6 | N6 | HN62 | 119.8° | 120.0° |
C6 | C5 | N7 | 132.9° | 134.7° |
HN61 | N6 | HN62 | 108.5° | 120.0° |
C5 | N7 | C8 | 103.1° | 109.4° |
N7 | C8 | H8 | 120.7° | 125.0° |
O2' | C2' | C3' | 110.9° | 110.5° |
O2' | C2' | H2' | 102.5° | 110.4° |
C2' | O2' | H1 | 115.2° | 106.8° |
C3' | C2' | H2' | 115.3° | 110.6° |
C2' | C3' | O3' | 105.3° | 110.5° |
C2' | C3' | H3' | 111.7° | 110.6° |
O3' | C3' | H3' | 113.8° | 110.5° |
C3' | O3' | H3 | 106.4° | 106.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
O5' | C5' | C4' | H5'2 | 125.3° | 120.1° |
O5' | C5' | H5'1 | H5'2 | 117.9° | 120.0° |
O5' | C5' | C4' | O4' | 9.8° | 66.5° |
O5' | C5' | C4' | C3' | 130.1° | 178.1° |
O5' | C5' | C4' | H4' | 109.5° | 55.8° |
H5' | O5' | C5' | C4' | 180.0° | 180.0° |
H5' | O5' | C5' | H5'1 | 54.7° | 59.9° |
H5' | O5' | C5' | H5'2 | 54.7° | 60.0° |
C4' | C5' | H5'1 | H5'2 | 117.9° | 119.9° |
C5' | C4' | O4' | C3' | 126.5° | 119.0° |
C5' | C4' | O4' | H4' | 112.1° | 122.2° |
C5' | C4' | C3' | H4' | 112.2° | 122.3° |
C5' | C4' | O4' | C1' | 105.1° | 159.5° |
C5' | C4' | C3' | C2' | 128.0° | 143.0° |
C5' | C4' | C3' | O3' | 119.0° | 98.4° |
C5' | C4' | C3' | H3' | 5.0° | 24.2° |
H5'1 | C5' | C4' | O4' | 135.1° | 173.5° |
H5'1 | C5' | C4' | C3' | 104.6° | 58.1° |
H5'1 | C5' | C4' | H4' | 15.7° | 64.3° |
H5'2 | C5' | C4' | O4' | 115.5° | 53.6° |
H5'2 | C5' | C4' | C3' | 4.8° | 61.8° |
H5'2 | C5' | C4' | H4' | 125.2° | 175.8° |
O4' | C4' | C3' | H4' | 120.5° | 118.8° |
C4' | O4' | C1' | N9 | 88.3° | 159.3° |
C4' | O4' | C1' | C2' | 34.5° | 40.5° |
C4' | O4' | C1' | H1' | 160.7° | 78.4° |
O4' | C4' | C3' | C2' | 0.7° | 24.1° |
O4' | C4' | C3' | O3' | 113.7° | 142.7° |
O4' | C4' | C3' | H3' | 122.3° | 94.7° |
C3' | C4' | O4' | C1' | 21.4° | 40.5° |
C4' | C3' | C2' | C1' | 20.3° | 0.1° |
C4' | C3' | C2' | O2' | 143.7° | 118.8° |
C4' | C3' | C2' | O3' | 113.7° | 118.7° |
C4' | C3' | C2' | H3' | 122.3° | 118.7° |
C4' | C3' | C2' | H2' | 100.4° | 118.6° |
C4' | C3' | O3' | H3' | 122.1° | 122.6° |
C4' | C3' | O3' | H3 | 180.0° | 61.5° |
H4' | C4' | O4' | C1' | 142.8° | 78.3° |
H4' | C4' | C3' | C2' | 119.8° | 94.7° |
H4' | C4' | C3' | O3' | 6.8° | 23.9° |
H4' | C4' | C3' | H3' | 117.3° | 146.5° |
O4' | C1' | N9 | C2' | 119.6° | 115.5° |
O4' | C1' | N9 | H1' | 114.6° | 122.3° |
O4' | C1' | C2' | H1' | 116.4° | 119.0° |
O4' | C1' | N9 | C4 | 80.0° | 158.0° |
O4' | C1' | N9 | C8 | 97.3° | 22.0° |
O4' | C1' | C2' | O2' | 152.3° | 94.7° |
O4' | C1' | C2' | C3' | 31.8° | 23.9° |
O4' | C1' | C2' | H2' | 91.8° | 142.6° |
N9 | C1' | C2' | H1' | 112.3° | 122.2° |
C1' | N9 | C4 | C8 | 177.4° | 180.0° |
C1' | N9 | C4 | N3 | 2.8° | 0.0° |
C1' | N9 | C4 | C5 | 177.2° | 179.8° |
C1' | N9 | C8 | N7 | 177.8° | 179.9° |
C1' | N9 | C8 | H8 | 2.2° | 0.0° |
N9 | C1' | C2' | O2' | 21.0° | 24.1° |
N9 | C1' | C2' | C3' | 99.5° | 142.7° |
N9 | C1' | C2' | H2' | 137.0° | 98.6° |
C2' | C1' | N9 | C4 | 39.7° | 86.5° |
C2' | C1' | N9 | C8 | 143.0° | 93.5° |
C1' | C2' | O2' | C3' | 115.8° | 114.5° |
C1' | C2' | O2' | H2' | 120.7° | 122.8° |
C1' | C2' | C3' | H2' | 120.6° | 118.8° |
C1' | C2' | O2' | H1 | 180.0° | 176.0° |
C1' | C2' | C3' | O3' | 134.0° | 118.8° |
C1' | C2' | C3' | H3' | 102.1° | 118.6° |
H1' | C1' | N9 | C4 | 165.4° | 35.7° |
H1' | C1' | N9 | C8 | 17.3° | 144.3° |
H1' | C1' | C2' | O2' | 91.3° | 146.3° |
H1' | C1' | C2' | C3' | 148.2° | 95.1° |
H1' | C1' | C2' | H2' | 24.6° | 23.6° |
N9 | C4 | N3 | C5 | 179.9° | 179.8° |
N9 | C4 | N3 | C2 | 179.9° | 180.0° |
N9 | C4 | C5 | C6 | 179.8° | 179.7° |
N9 | C4 | C5 | N7 | 0.2° | 0.4° |
C4 | N9 | C8 | N7 | 0.3° | 0.0° |
C4 | N9 | C8 | H8 | 179.7° | 180.0° |
C8 | N9 | C4 | N3 | 179.8° | 180.0° |
C8 | N9 | C4 | C5 | 0.3° | 0.2° |
N9 | C8 | N7 | C5 | 0.2° | 0.3° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
C4 | N3 | C2 | N1 | 0.0° | 0.1° |
C4 | N3 | C2 | H2 | 180.0° | 179.9° |
N3 | C4 | C5 | C6 | 0.2° | 0.5° |
N3 | C4 | C5 | N7 | 179.8° | 179.8° |
C5 | C4 | N3 | C2 | 0.1° | 0.2° |
C4 | C5 | C6 | N1 | 0.2° | 0.5° |
C4 | C5 | C6 | N6 | 179.8° | 179.8° |
C4 | C5 | C6 | N7 | 180.0° | 179.0° |
C4 | C5 | N7 | C8 | 0.0° | 0.4° |
N3 | C2 | N1 | H2 | 180.0° | 180.0° |
N3 | C2 | N1 | C6 | 0.0° | 0.0° |
C2 | N1 | C6 | N6 | 179.9° | 180.0° |
C2 | N1 | C6 | C5 | 0.1° | 0.2° |
H2 | C2 | N1 | C6 | 180.0° | 179.9° |
N1 | C6 | N6 | C5 | 180.0° | 179.8° |
N1 | C6 | N6 | HN61 | 54.8° | 0.0° |
N1 | C6 | N6 | HN62 | 180.0° | 179.7° |
N1 | C6 | C5 | N7 | 179.9° | 179.5° |
C6 | N6 | HN61 | HN62 | 131.6° | 179.7° |
N6 | C6 | C5 | N7 | 0.2° | 0.7° |
C5 | C6 | N6 | HN61 | 125.3° | 179.8° |
C5 | C6 | N6 | HN62 | 0.1° | 0.5° |
C6 | C5 | N7 | C8 | 179.9° | 179.5° |
C5 | N7 | C8 | H8 | 179.8° | 179.7° |
O2' | C2' | C3' | H2' | 115.9° | 122.6° |
O2' | C2' | C3' | O3' | 102.6° | 122.6° |
O2' | C2' | C3' | H3' | 21.4° | 0.1° |
C3' | C2' | O2' | H1 | 64.2° | 61.5° |
C2' | C3' | O3' | H3' | 122.6° | 122.7° |
C2' | C3' | O3' | H3 | 64.7° | 176.2° |
H2' | C2' | O2' | H1 | 59.4° | 61.2° |
H2' | C2' | C3' | O3' | 13.3° | 0.0° |
H2' | C2' | C3' | H3' | 137.3° | 122.6° |
H3' | C3' | O3' | H3 | 57.9° | 61.1° |