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R7I

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2BPBdoub1.48Å1.49Å
O2DC2Dsing1.43Å1.42Å
C2DC1Dsing1.55Å1.53Å
C2DC3Dsing1.55Å1.53Å
C1DO4Dsing1.45Å1.42Å
C1DO1Dsing1.43Å1.41Å
O4DC4Dsing1.44Å1.45Å
O3APBsing1.61Å1.61Å
O3APAsing1.61Å1.61Å
PBO5Dsing1.61Å1.59Å
PBO1Bsing1.61Å1.49Å
O2APAdoub1.48Å1.50Å
C5DO5Dsing1.43Å1.42Å
C5DC4Dsing1.53Å1.50Å
C3DC4Dsing1.54Å1.53Å
C3DO3Dsing1.43Å1.42Å
PAO1Asing1.61Å1.52Å
PAO5'sing1.61Å1.61Å
O3'C3'sing1.43Å1.42Å
O5'C5'sing1.43Å1.45Å
C5'C4'sing1.53Å1.51Å
C3'C4'sing1.54Å1.53Å
C3'C2'sing1.55Å1.53Å
C4'O4'sing1.44Å1.45Å
C2'O2'sing1.43Å1.41Å
C2'C1'sing1.55Å1.52Å
O4'C1'sing1.44Å1.41Å
C8N9sing1.36Å1.38ÅAromatic
C8N7doub1.30Å1.32ÅAromatic
C1'N9sing1.46Å1.46Å
N9C4sing1.37Å1.37ÅAromatic
N7C5sing1.35Å1.39ÅAromatic
C4C5doub1.40Å1.38ÅAromatic
C4N3sing1.34Å1.36Å
C5C6sing1.42Å1.42Å
N3C2doub1.30Å1.31Å
C6O1doub1.22Å1.24Å
C6N1sing1.35Å1.40Å
C2N1sing1.36Å1.34Å
O1BH1sing0.97Å0.95Å
C5DH2sing1.09Å1.10Å
C5DH3sing1.09Å1.10Å
C4DH4sing1.09Å1.10Å
C3DH5sing1.09Å1.10Å
O3DH6sing0.97Å0.95Å
C2DH7sing1.09Å1.10Å
O2DH8sing0.97Å0.95Å
C1DH9sing1.09Å1.10Å
O1DH10sing0.97Å0.95Å
O1AH11sing0.97Å0.95Å
C5'H12sing1.09Å1.10Å
C5'H13sing1.09Å1.10Å
C4'H14sing1.09Å1.10Å
C3'H15sing1.09Å1.10Å
O3'H16sing0.97Å0.95Å
C2'H17sing1.09Å1.10Å
O2'H18sing0.97Å0.95Å
C1'H19sing1.09Å1.10Å
C2H20sing1.08Å1.08Å
N1H21sing0.97Å1.00Å
C8H22sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2BPBO3A107.4°109.4°
O2BPBO5D108.6°109.5°
O2BPBO1B121.8°109.4°
O2DC2DC1D116.2°110.9°
O2DC2DC3D113.5°110.9°
O2DC2DH7110.5°110.8°
C2DO2DH8109.5°114.0°
C1DC2DC3D98.2°102.1°
C2DC1DO4D102.6°103.5°
C2DC1DO1D108.9°110.7°
C1DC2DH7108.9°110.9°
C2DC1DH9110.3°110.6°
C2DC3DC4D101.7°104.2°
C2DC3DO3D114.9°110.5°
C2DC3DH5110.4°110.6°
C3DC2DH7108.9°110.9°
O4DC1DO1D110.6°110.6°
C1DO4DC4D106.4°106.8°
O4DC1DH9111.9°110.6°
O1DC1DH9112.1°110.6°
C1DO1DH10109.5°114.1°
O4DC4DC5D108.5°109.8°
O4DC4DC3D106.4°107.4°
O4DC4DH4109.4°109.9°
PBO3APA133.4°134.0°
O3APBO5D98.5°109.5°
O3APBO1B109.6°109.5°
O3APAO2A104.7°109.5°
O3APAO1A110.1°109.5°
O3APAO5'102.9°109.5°
O5DPBO1B108.5°109.5°
PBO5DC5D116.6°123.0°
PBO1BH1109.5°113.9°
O2APAO1A119.1°109.4°
O2APAO5'109.8°109.5°
O5DC5DC4D105.9°109.5°
O5DC5DH2110.3°109.5°
O5DC5DH3110.3°109.5°
C5DC4DC3D115.3°109.9°
C4DC5DH2110.3°109.5°
C4DC5DH3110.4°109.5°
C5DC4DH4108.7°109.9°
C4DC3DO3D106.8°110.5°
C3DC4DH4108.4°109.9°
C4DC3DH5110.4°110.5°
O3DC3DH5112.0°110.4°
C3DO3DH6109.5°114.0°
O1APAO5'109.0°109.5°
PAO1AH11109.5°114.0°
PAO5'C5'119.3°123.0°
O3'C3'C4'113.0°110.5°
O3'C3'C2'112.2°110.5°
O3'C3'H15111.2°110.6°
C3'O3'H16109.5°114.0°
O5'C5'C4'109.7°109.5°
O5'C5'H12109.4°109.5°
O5'C5'H13109.4°109.5°
C5'C4'C3'117.0°109.9°
C5'C4'O4'109.4°109.9°
C4'C5'H12109.4°109.5°
C4'C5'H13109.4°109.5°
C5'C4'H14108.6°109.9°
C4'C3'C2'100.6°104.2°
C3'C4'O4'103.9°107.3°
C3'C4'H14108.3°110.0°
C4'C3'H15109.7°110.4°
C3'C2'O2'112.4°110.9°
C3'C2'C1'102.0°102.1°
C2'C3'H15109.7°110.5°
C3'C2'H17110.3°110.9°
C4'O4'C1'109.6°107.0°
O4'C4'H14109.4°109.9°
O2'C2'C1'109.2°110.9°
O2'C2'H17112.1°110.8°
C2'O2'H18109.5°114.0°
C2'C1'O4'107.3°103.5°
C2'C1'N9114.8°110.6°
C1'C2'H17110.4°110.9°
C2'C1'H19108.0°110.6°
O4'C1'N9108.3°110.6°
O4'C1'H19109.5°110.6°
N9C8N7112.3°109.8°
C8N9C1'127.8°126.3°
C8N9C4106.6°107.5°
N9C8H22123.9°125.1°
C8N7C5104.7°109.3°
N7C8H22123.8°125.1°
C1'N9C4125.5°126.3°
N9C1'H19108.9°110.7°
N9C4C5106.0°106.1°
N9C4N3126.5°134.3°
N7C5C4110.4°107.3°
N7C5C6130.0°134.3°
C5C4N3127.5°119.5°
C4C5C6119.6°118.5°
C4N3C2112.0°121.3°
C5C6O1128.0°121.0°
C5C6N1110.2°118.2°
N3C2N1124.8°122.2°
N3C2H20117.6°118.9°
O1C6N1121.8°120.9°
C6N1C2125.9°120.4°
C6N1H21117.0°119.8°
N1C2H20117.6°118.9°
C2N1H21117.1°119.8°
H2C5DH3109.5°109.5°
H12C5'H13109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2BPBO3AO5D112.6°120.0°
O2BPBO3AO1B134.2°120.0°
O2BPBO3APA129.2°40.0°
O2BPBO5DO1B134.3°120.0°
O2BPBO5DC5D49.1°55.0°
O2BPBO1BH10.0°180.0°
O2DC2DC1DC3D121.3°118.2°
O2DC2DC1DH7125.5°123.6°
O2DC2DC3DH7123.5°123.5°
O2DC2DC1DO4D170.8°81.2°
O2DC2DC1DO1D53.5°37.3°
O2DC2DC3DC4D163.1°97.4°
O2DC2DC3DO3D48.2°21.3°
O2DC2DC3DH579.7°143.9°
O2DC2DC1DH969.8°160.3°
C1DC2DC3DH7113.3°118.3°
C2DC1DO4DO1D116.0°118.6°
C2DC1DO4DH9118.3°118.5°
C2DC1DO1DH9122.3°122.9°
C2DC1DO4DC4D39.4°40.0°
C1DC2DC3DC4D39.8°20.8°
C1DC2DC3DO3D75.1°139.5°
C1DC2DC3DH5157.0°97.9°
C1DC2DO2DH8180.0°61.4°
C2DC1DO1DH10180.0°179.9°
C3DC2DC1DO4D49.5°37.0°
C3DC2DC1DO1D67.7°155.5°
C2DC3DC4DO4D18.4°2.1°
C2DC3DC4DC5D101.9°117.3°
C2DC3DC4DO3D120.8°118.7°
C2DC3DC4DH5117.2°118.8°
C2DC3DO3DH5127.1°122.7°
C2DC3DC4DH4136.0°121.6°
C2DC3DO3DH6180.0°65.2°
C3DC2DO2DH867.3°174.2°
C3DC2DC1DH9168.9°81.5°
O4DC1DO1DH9125.7°122.9°
C1DO4DC4DC5D137.6°93.0°
C1DO4DC4DC3D13.0°26.5°
C1DO4DC4DH4103.9°146.0°
O4DC1DC2DH763.8°155.2°
O4DC1DO1DH1068.0°65.9°
O1DC1DO4DC4D76.5°158.6°
O1DC1DC2DH7179.0°86.3°
O4DC4DC5DO5D61.9°66.7°
O4DC4DC5DC3D119.1°117.9°
O4DC4DC5DH4118.9°121.0°
O4DC4DC3DH4117.6°119.5°
O4DC4DC3DO3D102.4°116.6°
O4DC4DC5DH257.6°53.3°
O4DC4DC5DH3178.7°173.3°
O4DC4DC3DH5135.6°120.9°
C4DO4DC1DH9157.7°78.5°
O3APBO5DO1B114.0°120.1°
PBO3APAO2A176.0°45.0°
O3APBO5DC5D160.8°175.0°
PBO3APAO1A54.8°75.0°
PBO3APAO5'61.2°165.0°
O3APBO1BH1126.4°60.0°
PAO3APBO5D118.2°160.0°
PAO3APBO1B5.0°80.0°
O3APAO2AO1A123.6°119.9°
O3APAO2AO5'109.9°120.0°
O3APAO1AO5'112.2°120.0°
O3APAO5'C5'61.0°175.0°
O3APAO1AH11120.9°60.1°
PBO5DC5DC4D176.8°179.9°
O5DPBO1BH1127.0°60.0°
PBO5DC5DH257.4°60.0°
PBO5DC5DH363.8°59.9°
O1BPBO5DC5D85.2°64.9°
O2APAO1AO5'126.9°120.0°
O2APAO5'C5'50.0°55.0°
O2APAO1AH110.0°180.0°
O5DC5DC4DH2119.4°120.0°
O5DC5DC4DH3119.4°120.0°
O5DC5DC4DC3D179.0°175.3°
O5DC5DH2H3121.6°120.0°
O5DC5DC4DH457.1°54.3°
C5DC4DC3DH4122.2°121.1°
C5DC4DC3DO3D137.3°123.9°
C4DC5DH2H3121.7°120.0°
C5DC4DC3DH515.4°1.4°
C4DC3DO3DH5121.0°122.5°
C3DC4DC5DH261.6°64.6°
C3DC4DC5DH359.6°55.3°
C4DC3DO3DH668.0°180.0°
C4DC3DC2DH773.4°139.1°
O3DC3DC4DH415.2°2.9°
O3DC3DC2DH7171.6°102.2°
O1APAO5'C5'177.9°65.0°
PAO5'C5'C4'119.8°180.0°
O5'PAO1AH11126.9°60.0°
PAO5'C5'H120.3°60.0°
PAO5'C5'H13120.2°59.9°
O3'C3'C4'C5'80.8°119.9°
O3'C3'C4'C2'119.8°118.7°
O3'C3'C4'H15124.7°122.7°
O3'C3'C2'H15124.2°122.7°
O3'C3'C4'O4'158.6°120.7°
O3'C3'C2'O2'41.2°20.4°
O3'C3'C2'C1'158.0°97.8°
O3'C3'C4'H1442.3°1.2°
O3'C3'C2'H1784.7°144.0°
O5'C5'C4'H12120.0°120.0°
O5'C5'C4'H13120.0°120.0°
O5'C5'C4'C3'55.3°175.7°
O5'C5'C4'O4'62.4°66.5°
O5'C5'H12H13119.9°119.9°
O5'C5'C4'H14178.3°54.6°
C5'C4'C3'O4'120.6°119.4°
C5'C4'C3'H14123.1°121.0°
C5'C4'C3'C2'159.5°121.4°
C5'C4'O4'H14118.9°121.0°
C5'C4'O4'C1'150.6°145.9°
C4'C5'H12H13119.9°120.0°
C5'C4'C3'H1543.9°2.8°
C4'C3'C2'H15115.5°118.6°
C3'C4'O4'H14115.5°119.6°
C4'C3'C2'O2'79.1°139.1°
C4'C3'C2'C1'37.7°20.9°
C3'C4'O4'C1'25.0°26.5°
C3'C4'C5'H1264.7°64.3°
C3'C4'C5'H13175.3°55.7°
C4'C3'O3'H16180.0°180.0°
C4'C3'C2'H17155.0°97.4°
C2'C3'C4'O4'38.8°2.0°
C3'C2'O2'C1'112.4°112.7°
C3'C2'O2'H17124.9°123.6°
C3'C2'C1'H17117.2°118.2°
C3'C2'C1'O4'24.3°37.0°
C3'C2'C1'N996.0°155.5°
C2'C3'C4'H1477.4°117.5°
C2'C3'O3'H1667.2°65.3°
C3'C2'O2'H18180.0°61.4°
C3'C2'C1'H19142.3°81.4°
C4'O4'C1'C2'0.3°40.1°
C4'O4'C1'N9124.7°158.6°
O4'C4'C5'H12177.6°53.5°
O4'C4'C5'H1357.7°173.5°
O4'C4'C3'H1576.7°116.6°
C4'O4'C1'H19116.7°78.4°
O2'C2'C1'H17123.7°123.6°
O2'C2'C1'O4'94.8°155.2°
O2'C2'C1'N9144.8°86.3°
O2'C2'C3'H15165.4°102.3°
O2'C2'C1'H1923.2°36.7°
C2'C1'O4'N9124.4°118.5°
C2'C1'O4'H19117.0°118.4°
C2'C1'N9C8111.4°90.9°
C2'C1'N9H19121.2°122.9°
C2'C1'N9C470.2°89.5°
C1'C2'C3'H1577.8°139.5°
C1'C2'O2'H1867.5°174.2°
O4'C1'N9C88.4°23.2°
O4'C1'N9H19119.0°123.0°
O4'C1'N9C4170.0°156.5°
C1'O4'C4'H1490.5°93.0°
O4'C1'C2'H17141.6°81.2°
N9C8N7H22180.0°180.0°
C8N9C1'C4178.4°179.7°
N9C8N7C50.0°0.2°
C8N9C4C50.1°0.2°
C8N9C4N3179.6°179.7°
C8N9C1'H19127.4°146.2°
N7C8N9C1'178.7°180.0°
N7C8N9C40.1°0.2°
C8N7C5C40.1°0.0°
C8N7C5C6179.8°179.9°
C1'N9C4C5178.8°179.9°
C1'N9C4N31.7°0.0°
N9C1'C2'H1721.2°37.3°
C1'N9C8H221.3°0.0°
N9C4C5N70.1°0.1°
N9C4C5N3179.5°179.9°
N9C4C5C6179.8°180.0°
N9C4N3C2179.4°180.0°
C4N9C1'H1951.0°33.5°
C4N9C8H22179.9°179.7°
N7C5C4C6179.9°179.9°
N7C5C4N3179.6°179.8°
N7C5C6O10.2°0.1°
N7C5C6N1179.6°179.8°
C5N7C8H22180.0°179.8°
C5C4N3C20.1°0.1°
C4C5C6O1179.6°180.0°
C4C5C6N10.2°0.1°
N3C4C5C60.2°0.1°
C4N3C2N10.4°0.1°
C4N3C2H20179.6°179.9°
C5C6O1N1179.4°179.9°
C5C6N1C20.1°0.1°
C5C6N1H21179.9°180.0°
N3C2N1C60.4°0.1°
N3C2N1H20180.0°180.0°
N3C2N1H21179.6°179.9°
O1C6N1C2179.4°180.0°
O1C6N1H210.6°0.1°
C6N1C2H21180.0°179.9°
C6N1C2H20179.6°179.9°
H2C5DC4DH4176.5°174.3°
H3C5DC4DH462.4°65.7°
H4C4DC3DH5106.8°119.6°
H5C3DO3DH653.0°57.5°
H5C3DC2DH743.8°20.4°
H7C2DO2DH855.3°62.2°
H7C2DC1DH955.6°36.7°
H9C1DO1DH1057.7°57.0°
H12C5'C4'H1458.2°174.6°
H13C5'C4'H1461.7°65.4°
H14C4'C3'H15167.0°123.9°
H15C3'O3'H1656.1°57.4°
H15C3'C2'H1739.5°21.3°
H17C2'O2'H1855.1°62.2°
H17C2'C1'H19100.5°160.3°
H20C2N1H210.4°0.1°

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PDB entries from 2024-07-17

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