R5P
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1 | O1 | doub | 1.21Å | 1.20Å | |
| C1 | C2 | sing | 1.51Å | 1.53Å | |
| C2 | O2 | sing | 1.43Å | 1.43Å | |
| C2 | C3 | sing | 1.53Å | 1.51Å | |
| C3 | O3 | sing | 1.43Å | 1.44Å | |
| C3 | C4 | sing | 1.53Å | 1.53Å | |
| C4 | O4 | sing | 1.43Å | 1.44Å | |
| C4 | C5 | sing | 1.53Å | 1.50Å | |
| C5 | O5 | sing | 1.43Å | 1.42Å | |
| O5 | P | sing | 1.61Å | 1.57Å | |
| P | O1P | doub | 1.48Å | 1.49Å | |
| P | O2P | sing | 1.61Å | 1.48Å | |
| P | O3P | sing | 1.61Å | 1.49Å | |
| C1 | H11 | sing | 1.08Å | 1.08Å | |
| C2 | HC2 | sing | 1.09Å | 1.10Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å | |
| C3 | HC3 | sing | 1.09Å | 1.10Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| C4 | HC4 | sing | 1.09Å | 1.10Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| C5 | H51 | sing | 1.09Å | 1.10Å | |
| C5 | H52 | sing | 1.09Å | 1.10Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1 | C1 | C2 | 119.3° | 120.0° |
| O1 | C1 | H11 | 120.3° | 120.0° |
| C1 | C2 | O2 | 113.1° | 109.5° |
| C1 | C2 | C3 | 107.9° | 109.5° |
| C2 | C1 | H11 | 120.4° | 120.0° |
| C1 | C2 | HC2 | 110.3° | 109.4° |
| O2 | C2 | C3 | 103.0° | 109.5° |
| O2 | C2 | HC2 | 111.8° | 109.5° |
| C2 | O2 | HO2 | 109.5° | 114.0° |
| C2 | C3 | O3 | 114.5° | 109.5° |
| C2 | C3 | C4 | 98.3° | 109.5° |
| C3 | C2 | HC2 | 110.5° | 109.4° |
| C2 | C3 | HC3 | 102.0° | 109.4° |
| O3 | C3 | C4 | 133.4° | 109.5° |
| O3 | C3 | HC3 | 102.5° | 109.5° |
| C3 | O3 | HO3 | 109.5° | 114.0° |
| C3 | C4 | O4 | 130.7° | 109.5° |
| C3 | C4 | C5 | 97.3° | 109.5° |
| C4 | C3 | HC3 | 101.8° | 109.4° |
| C3 | C4 | HC4 | 103.5° | 109.5° |
| O4 | C4 | C5 | 114.1° | 109.5° |
| O4 | C4 | HC4 | 104.5° | 109.4° |
| C4 | O4 | HO4 | 109.5° | 114.0° |
| C4 | C5 | O5 | 106.8° | 109.5° |
| C5 | C4 | HC4 | 103.8° | 109.5° |
| C4 | C5 | H51 | 110.1° | 109.5° |
| C4 | C5 | H52 | 110.1° | 109.5° |
| C5 | O5 | P | 126.3° | 123.0° |
| O5 | C5 | H51 | 110.1° | 109.5° |
| O5 | C5 | H52 | 110.1° | 109.5° |
| O5 | P | O1P | 104.1° | 109.4° |
| O5 | P | O2P | 103.4° | 109.5° |
| O5 | P | O3P | 108.1° | 109.5° |
| O1P | P | O2P | 113.4° | 109.5° |
| O1P | P | O3P | 113.3° | 109.4° |
| O2P | P | O3P | 113.5° | 109.5° |
| P | O2P | HOP2 | 109.5° | 114.0° |
| P | O3P | HOP3 | 109.5° | 114.0° |
| H51 | C5 | H52 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1 | C1 | C2 | H11 | 180.0° | 179.8° |
| O1 | C1 | C2 | O2 | 65.8° | 0.0° |
| O1 | C1 | C2 | C3 | 179.1° | 120.0° |
| O1 | C1 | C2 | HC2 | 60.2° | 120.0° |
| C1 | C2 | O2 | C3 | 116.2° | 120.0° |
| C1 | C2 | O2 | HC2 | 125.2° | 120.0° |
| C1 | C2 | C3 | HC2 | 120.6° | 119.9° |
| C1 | C2 | C3 | O3 | 82.5° | 60.0° |
| C1 | C2 | C3 | C4 | 63.7° | 180.0° |
| C1 | C2 | O2 | HO2 | 24.3° | 60.1° |
| C1 | C2 | C3 | HC3 | 167.7° | 60.1° |
| O2 | C2 | C3 | HC2 | 119.5° | 120.1° |
| O2 | C2 | C3 | O3 | 37.4° | 180.0° |
| O2 | C2 | C3 | C4 | 176.5° | 60.0° |
| O2 | C2 | C1 | H11 | 114.2° | 179.7° |
| O2 | C2 | C3 | HC3 | 72.5° | 59.9° |
| C2 | C3 | O3 | C4 | 130.6° | 120.0° |
| C2 | C3 | O3 | HC3 | 109.6° | 120.0° |
| C2 | C3 | C4 | HC3 | 104.2° | 119.9° |
| C2 | C3 | C4 | O4 | 48.7° | 60.0° |
| C2 | C3 | C4 | C5 | 179.5° | 180.0° |
| C3 | C2 | C1 | H11 | 0.9° | 60.2° |
| C3 | C2 | O2 | HO2 | 140.5° | 59.9° |
| C2 | C3 | O3 | HO3 | 180.0° | 59.9° |
| C2 | C3 | C4 | HC4 | 74.3° | 60.0° |
| O3 | C3 | C4 | HC3 | 120.1° | 120.0° |
| O3 | C3 | C4 | O4 | 175.5° | 180.0° |
| O3 | C3 | C4 | C5 | 44.7° | 60.0° |
| O3 | C3 | C2 | HC2 | 156.9° | 59.9° |
| O3 | C3 | C4 | HC4 | 61.4° | 60.1° |
| C3 | C4 | O4 | C5 | 124.7° | 120.1° |
| C3 | C4 | O4 | HC4 | 122.6° | 120.0° |
| C3 | C4 | C5 | HC4 | 105.9° | 120.0° |
| C3 | C4 | C5 | O5 | 169.2° | 175.0° |
| C4 | C3 | C2 | HC2 | 56.9° | 60.1° |
| C4 | C3 | O3 | HO3 | 49.4° | 60.1° |
| C3 | C4 | O4 | HO4 | 180.0° | 60.0° |
| C3 | C4 | C5 | H51 | 49.6° | 55.0° |
| C3 | C4 | C5 | H52 | 71.2° | 65.0° |
| O4 | C4 | C5 | HC4 | 113.1° | 119.9° |
| O4 | C4 | C5 | O5 | 49.8° | 64.9° |
| O4 | C4 | C3 | HC3 | 55.5° | 60.0° |
| O4 | C4 | C5 | H51 | 169.4° | 175.0° |
| O4 | C4 | C5 | H52 | 69.8° | 55.0° |
| C4 | C5 | O5 | H51 | 119.6° | 120.0° |
| C4 | C5 | O5 | H52 | 119.6° | 120.0° |
| C4 | C5 | O5 | P | 174.5° | 180.0° |
| C5 | C4 | C3 | HC3 | 75.4° | 60.0° |
| C5 | C4 | O4 | HO4 | 55.4° | 60.1° |
| C4 | C5 | H51 | H52 | 121.2° | 120.0° |
| C5 | O5 | P | O1P | 159.9° | 55.1° |
| C5 | O5 | P | O2P | 81.4° | 175.0° |
| C5 | O5 | P | O3P | 39.2° | 64.9° |
| O5 | C5 | C4 | HC4 | 63.3° | 55.0° |
| O5 | C5 | H51 | H52 | 121.3° | 120.0° |
| O5 | P | O1P | O2P | 111.7° | 120.0° |
| O5 | P | O1P | O3P | 117.1° | 120.0° |
| O5 | P | O2P | O3P | 116.8° | 120.1° |
| P | O5 | C5 | H51 | 65.9° | 59.9° |
| P | O5 | C5 | H52 | 55.0° | 60.1° |
| O5 | P | O2P | HOP2 | 112.1° | 180.0° |
| O5 | P | O3P | HOP3 | 114.8° | 60.0° |
| O1P | P | O2P | O3P | 131.1° | 120.0° |
| O1P | P | O2P | HOP2 | 0.0° | 60.0° |
| O1P | P | O3P | HOP3 | 0.0° | 180.0° |
| O2P | P | O3P | HOP3 | 131.2° | 60.1° |
| O3P | P | O2P | HOP2 | 131.1° | 59.9° |
| H11 | C1 | C2 | HC2 | 119.8° | 59.7° |
| HC2 | C2 | O2 | HO2 | 100.8° | 180.0° |
| HC2 | C2 | C3 | HC3 | 47.0° | 180.0° |
| HC3 | C3 | O3 | HO3 | 70.5° | 180.0° |
| HC3 | C3 | C4 | HC4 | 178.5° | 180.0° |
| HC4 | C4 | O4 | HO4 | 57.4° | 180.0° |
| HC4 | C4 | C5 | H51 | 56.3° | 65.1° |
| HC4 | C4 | C5 | H52 | 177.1° | 175.0° |
