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R5I

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1DC1Dsing1.43Å1.31Å
O1BPBdoub1.48Å1.49Å
O2DC2Dsing1.43Å1.42Å
C1DC2Dsing1.55Å1.52Å
C1DO4Dsing1.44Å1.42Å
C2DC3Dsing1.55Å1.53Å
O4DC4Dsing1.44Å1.46Å
O3APBsing1.61Å1.61Å
O3APAsing1.61Å1.60Å
PBO5Dsing1.61Å1.58Å
PBO2Bsing1.61Å1.48Å
O2APAdoub1.48Å1.49Å
C5DO5Dsing1.43Å1.41Å
C5DC4Dsing1.53Å1.50Å
C3DC4Dsing1.54Å1.53Å
C3DO3Dsing1.43Å1.43Å
PAO1Asing1.61Å1.52Å
PAO5'sing1.61Å1.60Å
O3'C3'sing1.43Å1.43Å
O5'C5'sing1.43Å1.45Å
C5'C4'sing1.53Å1.51Å
C3'C4'sing1.54Å1.53Å
C3'C2'sing1.55Å1.53Å
C4'O4'sing1.44Å1.44Å
C2'O2'sing1.43Å1.41Å
C2'C1'sing1.54Å1.52Å
O4'C1'sing1.44Å1.41Å
C8N9sing1.36Å1.38ÅAromatic
C8N7doub1.30Å1.32ÅAromatic
C1'N9sing1.47Å1.45Å
N9C4sing1.37Å1.37ÅAromatic
N7C5sing1.35Å1.39ÅAromatic
C4C5doub1.40Å1.38ÅAromatic
C4N3sing1.34Å1.36Å
C5C6sing1.42Å1.42Å
N3C2doub1.30Å1.31Å
C6O1doub1.22Å1.24Å
C6N1sing1.35Å1.40Å
C2N1sing1.36Å1.35Å
N1H1sing0.97Å1.00Å
C2H2sing1.08Å1.08Å
C8H3sing1.08Å1.08Å
C1'H4sing1.09Å1.10Å
C4'H5sing1.09Å1.10Å
C5'H6sing1.09Å1.10Å
C5'H7sing1.09Å1.10Å
O1AH8sing0.97Å0.95Å
O2BH9sing0.97Å0.95Å
C5DH10sing1.09Å1.10Å
C5DH11sing1.09Å1.10Å
C4DH12sing1.09Å1.10Å
C1DH13sing1.09Å1.10Å
O1DH14sing0.97Å0.95Å
C2DH15sing1.09Å1.10Å
O2DH16sing0.97Å0.95Å
C3DH17sing1.09Å1.10Å
O3DH18sing0.97Å0.95Å
C3'H19sing1.09Å1.10Å
O3'H20sing0.97Å0.95Å
C2'H21sing1.09Å1.10Å
O2'H22sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1DC1DC2D101.8°110.6°
O1DC1DO4D111.2°110.5°
O1DC1DH13114.1°110.7°
C1DO1DH14109.5°114.0°
O1BPBO3A107.5°109.5°
O1BPBO5D107.7°109.5°
O1BPBO2B122.2°109.5°
O2DC2DC1D114.5°110.9°
O2DC2DC3D114.2°110.8°
O2DC2DH15110.5°110.8°
C2DO2DH16109.5°114.0°
C2DC1DO4D106.3°103.5°
C1DC2DC3D98.8°102.1°
C2DC1DH13110.5°110.6°
C1DC2DH15109.1°110.9°
C1DO4DC4D106.6°107.0°
O4DC1DH13112.1°110.7°
C2DC3DC4D102.0°104.0°
C2DC3DO3D113.3°110.5°
C3DC2DH15109.1°111.0°
C2DC3DH17110.1°110.5°
O4DC4DC5D106.7°109.9°
O4DC4DC3D107.1°107.4°
O4DC4DH12109.6°109.9°
PBO3APA134.0°134.0°
O3APBO5D98.4°109.5°
O3APBO2B109.7°109.5°
O3APAO2A103.8°109.5°
O3APAO1A111.3°109.5°
O3APAO5'103.2°109.5°
O5DPBO2B108.8°109.5°
PBO5DC5D117.2°123.0°
PBO2BH9109.5°114.0°
O2APAO1A119.0°109.5°
O2APAO5'110.0°109.5°
O5DC5DC4D104.5°109.5°
O5DC5DH10110.7°109.4°
O5DC5DH11110.7°109.5°
C5DC4DC3D115.6°109.9°
C4DC5DH10110.7°109.5°
C4DC5DH11110.7°109.5°
C5DC4DH12109.0°109.8°
C4DC3DO3D109.3°110.6°
C3DC4DH12108.7°109.9°
C4DC3DH17110.1°110.4°
O3DC3DH17111.6°110.6°
C3DO3DH18109.5°114.0°
O1APAO5'108.4°109.4°
PAO1AH8109.5°114.0°
PAO5'C5'120.0°123.0°
O3'C3'C4'113.4°110.5°
O3'C3'C2'112.6°110.4°
O3'C3'H19110.9°110.6°
C3'O3'H20109.5°114.0°
O5'C5'C4'109.7°109.5°
O5'C5'H6109.4°109.5°
O5'C5'H7109.4°109.5°
C5'C4'C3'117.3°110.5°
C5'C4'O4'109.1°110.3°
C5'C4'H5108.4°110.4°
C4'C5'H6109.4°109.4°
C4'C5'H7109.4°109.5°
C4'C3'C2'100.4°104.1°
C3'C4'O4'104.3°104.8°
C3'C4'H5108.2°110.4°
C4'C3'H19109.5°110.5°
C3'C2'O2'112.7°110.5°
C3'C2'C1'101.8°103.9°
C2'C3'H19109.5°110.5°
C3'C2'H21110.6°110.5°
C4'O4'C1'109.6°105.3°
O4'C4'H5109.3°110.3°
O2'C2'C1'108.0°110.7°
O2'C2'H21112.5°110.5°
C2'O2'H22109.5°114.0°
C2'C1'O4'107.3°104.9°
C2'C1'N9115.5°110.4°
C2'C1'H4107.8°110.4°
C1'C2'H21110.7°110.6°
O4'C1'N9108.2°110.4°
O4'C1'H4109.3°110.3°
N9C8N7112.2°109.8°
C8N9C1'128.2°126.3°
C8N9C4106.6°107.5°
N9C8H3123.9°125.1°
C8N7C5104.6°109.2°
N7C8H3123.9°125.0°
C1'N9C4125.1°126.2°
N9C1'H4108.7°110.3°
N9C4C5105.9°106.1°
N9C4N3126.4°134.3°
N7C5C4110.7°107.3°
N7C5C6129.7°134.2°
C5C4N3127.7°119.5°
C4C5C6119.6°118.5°
C4N3C2111.9°121.3°
C5C6O1127.6°121.0°
C5C6N1110.1°118.1°
N3C2N1124.4°122.2°
N3C2H2117.8°118.9°
O1C6N1122.3°120.9°
C6N1C2126.2°120.4°
C6N1H1116.9°119.8°
C2N1H1116.9°119.9°
N1C2H2117.8°118.9°
H6C5'H7109.5°109.4°
H10C5DH11109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1DC1DC2DO2D78.8°86.4°
O1DC1DC2DO4D116.5°118.4°
O1DC1DC2DH13121.6°123.0°
O1DC1DO4DH13129.1°123.0°
O1DC1DC2DC3D159.4°155.5°
O1DC1DO4DC4D138.9°158.5°
O1DC1DC2DH1545.6°37.2°
O1BPBO3AO5D111.7°120.0°
O1BPBO3AO2B134.9°120.0°
O1BPBO3APA122.5°40.0°
O1BPBO5DO2B134.3°120.0°
O1BPBO5DC5D60.6°55.0°
O1BPBO2BH90.0°179.9°
O2DC2DC1DC3D121.8°118.1°
O2DC2DC1DH15124.4°123.6°
O2DC2DC1DO4D164.7°155.2°
O2DC2DC3DH15124.2°123.5°
O2DC2DC3DC4D161.0°139.2°
O2DC2DC3DO3D43.6°20.4°
O2DC2DC1DH1342.8°36.6°
O2DC2DC3DH1782.1°102.3°
C2DC1DO4DH13120.9°118.5°
C1DC2DC3DH15113.9°118.3°
C2DC1DO4DC4D28.9°40.0°
C1DC2DC3DC4D39.0°21.0°
C1DC2DC3DO3D78.3°97.8°
C2DC1DO1DH14180.0°180.0°
C1DC2DO2DH16180.0°61.4°
C1DC2DC3DH17155.9°139.5°
O4DC1DC2DC3D42.9°37.1°
C1DO4DC4DC5D126.9°145.9°
C1DO4DC4DC3D2.5°26.4°
C1DO4DC4DH12115.2°93.1°
O4DC1DO1DH1467.1°66.0°
O4DC1DC2DH1570.9°81.2°
C2DC3DC4DO4D24.1°1.9°
C2DC3DC4DC5D94.6°121.5°
C2DC3DC4DO3D120.2°118.6°
C2DC3DC4DH17116.9°118.6°
C2DC3DO3DH17124.9°122.7°
C2DC3DC4DH12142.5°117.6°
C3DC2DC1DH1378.9°81.5°
C3DC2DO2DH1667.1°174.1°
C2DC3DO3DH18180.0°61.5°
O4DC4DC5DO5D57.7°66.7°
O4DC4DC5DC3D119.0°118.0°
O4DC4DC5DH12118.3°121.0°
O4DC4DC3DH12118.4°119.5°
O4DC4DC3DO3D96.1°120.6°
O4DC4DC5DH1061.5°53.3°
O4DC4DC5DH11176.9°173.3°
C4DO4DC1DH1391.9°78.5°
O4DC4DC3DH17141.0°116.7°
O3APBO5DO2B114.2°120.0°
PBO3APAO2A178.6°45.0°
O3APBO5DC5D172.1°175.0°
PBO3APAO1A49.5°75.0°
PBO3APAO5'66.6°165.0°
O3APBO2BH9127.0°60.0°
PAO3APBO5D125.8°160.0°
PAO3APBO2B12.4°80.0°
O3APAO2AO1A124.3°120.0°
O3APAO2AO5'109.8°120.0°
O3APAO1AO5'112.8°120.0°
O3APAO5'C5'57.5°175.0°
O3APAO1AH8120.6°60.0°
PBO5DC5DC4D175.5°180.0°
O5DPBO2BH9126.4°60.1°
PBO5DC5DH1065.3°60.0°
PBO5DC5DH1156.3°60.0°
O2BPBO5DC5D73.7°65.0°
O2APAO1AO5'126.6°120.0°
O2APAO5'C5'52.7°55.0°
O2APAO1AH80.0°180.0°
O5DC5DC4DH10119.2°120.0°
O5DC5DC4DH11119.2°120.0°
O5DC5DC4DC3D176.7°175.3°
O5DC5DH10H11122.3°120.0°
O5DC5DC4DH1260.6°54.4°
C5DC4DC3DH12122.9°120.9°
C5DC4DC3DO3D145.2°119.9°
C4DC5DH10H11122.3°120.1°
C5DC4DC3DH1722.3°2.9°
C4DC3DO3DH17122.0°122.7°
C3DC4DC5DH1057.5°64.7°
C3DC4DC5DH1164.1°55.3°
C4DC3DC2DH1574.8°97.3°
C4DC3DO3DH1866.9°176.2°
O3DC3DC4DH1222.3°1.0°
O3DC3DC2DH15167.8°144.0°
O1APAO5'C5'175.6°65.0°
PAO5'C5'C4'122.0°179.9°
PAO5'C5'H62.0°60.0°
PAO5'C5'H7118.0°60.0°
O5'PAO1AH8126.6°60.0°
O3'C3'C4'C5'80.5°98.6°
O3'C3'C4'C2'120.3°118.6°
O3'C3'C4'H19124.6°122.7°
O3'C3'C2'H19123.9°122.7°
O3'C3'C4'O4'158.7°142.6°
O3'C3'C2'O2'43.4°0.0°
O3'C3'C2'C1'158.9°118.7°
O3'C3'C4'H542.4°23.8°
O3'C3'C2'H2183.4°122.6°
O5'C5'C4'H6120.0°120.0°
O5'C5'C4'H7120.0°120.0°
O5'C5'C4'C3'53.8°178.1°
O5'C5'C4'O4'64.5°66.5°
O5'C5'C4'H5176.6°55.7°
O5'C5'H6H7119.9°120.0°
C5'C4'C3'O4'120.8°118.8°
C5'C4'C3'H5123.0°122.4°
C5'C4'C3'C2'159.2°142.9°
C5'C4'O4'H5118.4°122.2°
C5'C4'O4'C1'150.1°159.4°
C4'C5'H6H7119.9°120.1°
C5'C4'C3'H1944.1°24.2°
C4'C3'C2'H19115.2°118.7°
C3'C4'O4'H5115.5°118.8°
C4'C3'C2'O2'77.5°118.6°
C4'C3'C2'C1'38.0°0.1°
C3'C4'O4'C1'23.9°40.5°
C3'C4'C5'H666.2°58.1°
C3'C4'C5'H7173.8°61.8°
C4'C3'O3'H20180.0°180.0°
C4'C3'C2'H21155.6°118.8°
C2'C3'C4'O4'38.4°24.0°
C3'C2'O2'C1'111.7°114.6°
C3'C2'O2'H21125.8°122.6°
C3'C2'C1'H21117.6°118.6°
C3'C2'C1'O4'25.3°23.9°
C3'C2'C1'N995.4°142.7°
C3'C2'C1'H4142.9°95.0°
C2'C3'C4'H577.9°94.7°
C2'C3'O3'H2066.8°65.4°
C3'C2'O2'H22180.0°61.5°
C4'O4'C1'C2'1.1°40.5°
C4'O4'C1'N9124.1°159.3°
C4'O4'C1'H4117.7°78.5°
O4'C4'C5'H6175.5°173.6°
O4'C4'C5'H755.5°53.6°
O4'C4'C3'H1976.7°94.7°
O2'C2'C1'H21123.6°122.8°
O2'C2'C1'O4'93.5°142.5°
O2'C2'C1'N9145.8°98.7°
O2'C2'C1'H424.1°23.6°
O2'C2'C3'H19167.3°122.7°
C2'C1'O4'N9125.2°118.9°
C2'C1'O4'H4116.6°118.9°
C2'C1'N9C8111.0°93.4°
C2'C1'N9H4121.2°122.3°
C2'C1'N9C471.2°87.6°
C1'C2'C3'H1977.2°118.6°
C1'C2'O2'H2268.3°176.1°
O4'C1'N9C89.2°22.1°
O4'C1'N9H4118.5°122.2°
O4'C1'N9C4168.6°156.9°
C1'O4'C4'H591.5°78.3°
O4'C1'C2'H21142.9°94.7°
N9C8N7H3180.0°179.1°
C8N9C1'C4177.8°178.9°
N9C8N7C50.3°0.5°
C8N9C4C50.1°0.9°
C8N9C4N3178.9°179.8°
C8N9C1'H4127.8°144.3°
N7C8N9C1'178.0°180.0°
N7C8N9C40.1°0.9°
C8N7C5C40.3°0.0°
C8N7C5C6179.5°179.3°
C1'N9C4C5178.3°180.0°
C1'N9C4N32.9°0.7°
C1'N9C8H32.0°0.9°
N9C1'C2'H2122.2°24.2°
N9C4C5N70.3°0.6°
N9C4C5N3178.8°179.5°
N9C4C5C6179.6°180.0°
N9C4N3C2178.7°179.6°
C4N9C8H3179.9°180.0°
C4N9C1'H450.1°34.7°
N7C5C4C6179.8°179.4°
N7C5C4N3179.1°180.0°
N7C5C6O10.4°0.5°
N7C5C6N1179.3°179.8°
C5N7C8H3179.7°179.6°
C5C4N3C20.1°0.3°
C4C5C6O1179.3°179.7°
C4C5C6N10.5°0.6°
N3C4C5C60.7°0.6°
C4N3C2N10.6°0.1°
C4N3C2H2179.4°180.0°
C5C6O1N1178.7°179.7°
C5C6N1C20.2°0.3°
C5C6N1H1179.8°179.7°
N3C2N1C60.8°0.1°
N3C2N1H2180.0°179.9°
N3C2N1H1179.1°180.0°
O1C6N1C2178.7°179.9°
O1C6N1H11.3°0.0°
C6N1C2H1180.0°179.9°
C6N1C2H2179.2°180.0°
H1N1C2H20.8°0.1°
H4C1'C2'H2199.5°146.4°
H5C4'C5'H656.6°64.2°
H5C4'C5'H763.4°175.8°
H5C4'C3'H19167.0°146.5°
H10C5DC4DH12179.8°174.3°
H11C5DC4DH1258.6°65.6°
H12C4DC3DH17100.6°123.8°
H13C1DO1DH1460.9°57.0°
H13C1DC2DH15167.3°160.2°
H15C2DO2DH1656.3°62.2°
H15C2DC3DH1742.1°21.3°
H17C3DO3DH1855.1°61.2°
H19C3'O3'H2056.2°57.3°
H19C3'C2'H2140.4°0.1°
H21C2'O2'H2254.2°61.1°

222624

PDB entries from 2024-07-17

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