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SummaryGeometryRelated PDB entries

R2K

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
NA2O08sing1.99Å1.93Å
O08C02sing1.34Å1.41Å
C02O01doub1.21Å1.18Å
C02C03sing1.51Å1.53Å
C03C04sing1.51Å1.53Å
C04O07doub1.21Å1.19Å
C04O05sing1.34Å1.39Å
O05NA1sing1.99Å1.91Å
C03H032sing1.09Å1.10Å
C03H031sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
NA2O08C02179.1°117.0°
O08C02O01119.6°120.0°
O08C02C03121.5°120.0°
O01C02C03118.5°120.0°
C02C03C04113.1°109.5°
C02C03H032108.5°109.5°
C02C03H031108.6°109.5°
C03C04O07121.6°120.0°
C03C04O05117.6°120.0°
C04C03H032108.5°109.5°
C04C03H031108.5°109.5°
O07C04O05117.4°120.0°
C04O05NA1178.9°117.0°
H032C03H031109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
NA2O08C02O0138.8°0.0°
NA2O08C02C03134.3°179.7°
O08C02O01C03173.3°179.8°
O08C02C03C04130.3°179.7°
O08C02C03H032109.2°60.2°
O08C02C03H0319.8°59.7°
O01C02C03C0456.5°0.0°
O01C02C03H03264.0°120.0°
O01C02C03H031177.0°120.0°
C02C03C04H032120.5°120.0°
C02C03C04H031120.5°120.0°
C02C03C04O0713.4°0.0°
C02C03C04O05145.3°179.9°
C02C03H032H031118.4°120.0°
C03C04O07O05158.7°180.0°
C03C04O05NA160.4°180.0°
C04C03H032H031118.3°120.0°
O07C04O05NA199.2°0.1°
O07C04C03H032107.1°120.0°
O07C04C03H031134.0°120.0°
O05C04C03H03294.2°60.0°
O05C04C03H03124.7°59.9°

247536

PDB entries from 2026-01-14

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