R1P
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C5 | O5 | sing | 1.43Å | 1.50Å | |
| C5 | C4 | sing | 1.53Å | 1.48Å | |
| C5 | H51 | sing | 1.09Å | 1.12Å | |
| C5 | H52 | sing | 1.09Å | 1.11Å | |
| O5 | HO5 | sing | 0.97Å | 0.95Å | |
| C4 | O4 | sing | 1.43Å | 1.51Å | |
| C4 | C3 | sing | 1.54Å | 1.55Å | |
| C4 | H4 | sing | 1.09Å | 1.11Å | |
| O4 | C1 | sing | 1.44Å | 1.43Å | |
| C1 | C2 | sing | 1.55Å | 1.63Å | |
| C1 | O1 | sing | 1.43Å | 1.68Å | |
| C1 | H1 | sing | 1.09Å | 1.12Å | |
| C2 | O2 | sing | 1.43Å | 1.44Å | |
| C2 | C3 | sing | 1.56Å | 1.57Å | |
| C2 | H2 | sing | 1.09Å | 1.11Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å | |
| C3 | O3 | sing | 1.43Å | 1.44Å | |
| C3 | H3 | sing | 1.09Å | 1.11Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| O1 | P | sing | 1.61Å | 1.73Å | |
| P | O1P | doub | 1.48Å | 1.52Å | |
| P | O2P | sing | 1.61Å | 1.51Å | |
| P | O3P | sing | 1.61Å | 1.51Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5 | C5 | C4 | 122.5° | 109.5° |
| O5 | C5 | H51 | 107.6° | 109.4° |
| O5 | C5 | H52 | 107.6° | 109.5° |
| C5 | O5 | HO5 | 122.4° | 106.9° |
| C4 | C5 | H51 | 107.5° | 109.4° |
| C4 | C5 | H52 | 107.5° | 109.5° |
| C5 | C4 | O4 | 104.1° | 109.8° |
| C5 | C4 | C3 | 123.7° | 109.9° |
| C5 | C4 | H4 | 102.5° | 109.8° |
| H51 | C5 | H52 | 102.2° | 109.5° |
| O4 | C4 | C3 | 105.4° | 107.7° |
| O4 | C4 | H4 | 121.7° | 109.8° |
| C4 | O4 | C1 | 116.4° | 110.0° |
| C3 | C4 | H4 | 101.0° | 109.8° |
| C4 | C3 | C2 | 101.9° | 102.2° |
| C4 | C3 | O3 | 113.2° | 111.1° |
| C4 | C3 | H3 | 111.6° | 110.8° |
| O4 | C1 | C2 | 99.1° | 105.2° |
| O4 | C1 | O1 | 107.0° | 110.3° |
| O4 | C1 | H1 | 114.7° | 110.3° |
| C2 | C1 | O1 | 100.8° | 110.4° |
| C2 | C1 | H1 | 119.9° | 110.3° |
| C1 | C2 | O2 | 112.1° | 111.1° |
| C1 | C2 | C3 | 107.0° | 101.0° |
| C1 | C2 | H2 | 111.0° | 111.2° |
| O1 | C1 | H1 | 113.3° | 110.3° |
| C1 | O1 | P | 119.4° | 106.9° |
| O2 | C2 | C3 | 113.7° | 111.1° |
| O2 | C2 | H2 | 103.8° | 111.0° |
| C2 | O2 | HO2 | 112.1° | 106.8° |
| C3 | C2 | H2 | 109.3° | 111.2° |
| C2 | C3 | O3 | 108.1° | 110.8° |
| C2 | C3 | H3 | 116.5° | 110.8° |
| O3 | C3 | H3 | 105.7° | 110.8° |
| C3 | O3 | HO3 | 113.2° | 106.7° |
| O1 | P | O1P | 114.0° | 109.5° |
| O1 | P | O2P | 94.2° | 109.5° |
| O1 | P | O3P | 104.5° | 109.5° |
| O1P | P | O2P | 118.5° | 109.5° |
| O1P | P | O3P | 116.9° | 109.4° |
| O2P | P | O3P | 105.6° | 109.4° |
| P | O2P | HOP2 | 94.2° | 106.9° |
| P | O3P | HOP3 | 104.5° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5 | C5 | C4 | H51 | 125.3° | 120.0° |
| O5 | C5 | C4 | H52 | 125.3° | 120.0° |
| O5 | C5 | H51 | H52 | 113.2° | 120.0° |
| O5 | C5 | C4 | O4 | 61.5° | 61.5° |
| O5 | C5 | C4 | C3 | 178.7° | 179.8° |
| O5 | C5 | C4 | H4 | 66.2° | 59.3° |
| C4 | C5 | H51 | H52 | 113.1° | 120.0° |
| C4 | C5 | O5 | HO5 | 180.0° | 180.0° |
| C5 | C4 | O4 | C3 | 131.5° | 119.6° |
| C5 | C4 | O4 | H4 | 114.6° | 120.8° |
| C5 | C4 | C3 | H4 | 113.3° | 120.8° |
| C5 | C4 | O4 | C1 | 130.8° | 117.9° |
| C5 | C4 | C3 | C2 | 99.3° | 140.8° |
| C5 | C4 | C3 | O3 | 144.9° | 100.9° |
| C5 | C4 | C3 | H3 | 25.7° | 22.7° |
| H51 | C5 | O5 | HO5 | 54.7° | 60.0° |
| H51 | C5 | C4 | O4 | 63.8° | 58.4° |
| H51 | C5 | C4 | C3 | 56.0° | 59.8° |
| H51 | C5 | C4 | H4 | 168.6° | 179.3° |
| H52 | C5 | O5 | HO5 | 54.8° | 60.0° |
| H52 | C5 | C4 | O4 | 173.3° | 178.4° |
| H52 | C5 | C4 | C3 | 53.4° | 60.2° |
| H52 | C5 | C4 | H4 | 59.1° | 60.7° |
| O4 | C4 | C3 | H4 | 127.5° | 119.6° |
| C4 | O4 | C1 | C2 | 17.8° | 24.4° |
| C4 | O4 | C1 | O1 | 86.4° | 143.5° |
| C4 | O4 | C1 | H1 | 146.9° | 94.5° |
| O4 | C4 | C3 | C2 | 20.0° | 21.3° |
| O4 | C4 | C3 | O3 | 95.8° | 139.5° |
| O4 | C4 | C3 | H3 | 145.0° | 96.9° |
| C3 | C4 | O4 | C1 | 0.8° | 1.7° |
| C4 | C3 | C2 | C1 | 31.2° | 34.0° |
| C4 | C3 | C2 | O2 | 155.5° | 83.9° |
| C4 | C3 | C2 | O3 | 119.5° | 118.5° |
| C4 | C3 | C2 | H3 | 121.7° | 118.1° |
| C4 | C3 | C2 | H2 | 89.1° | 152.0° |
| C4 | C3 | O3 | H3 | 122.5° | 123.6° |
| C4 | C3 | O3 | HO3 | 180.0° | 174.4° |
| H4 | C4 | O4 | C1 | 114.6° | 121.3° |
| H4 | C4 | C3 | C2 | 147.5° | 98.3° |
| H4 | C4 | C3 | O3 | 31.7° | 19.9° |
| H4 | C4 | C3 | H3 | 87.5° | 143.6° |
| O4 | C1 | C2 | O1 | 109.4° | 119.0° |
| O4 | C1 | C2 | H1 | 125.5° | 118.9° |
| O4 | C1 | O1 | H1 | 127.5° | 122.1° |
| O4 | C1 | C2 | O2 | 155.4° | 81.5° |
| O4 | C1 | C2 | C3 | 30.1° | 36.4° |
| O4 | C1 | C2 | H2 | 89.0° | 154.4° |
| O4 | C1 | O1 | P | 150.3° | 91.4° |
| C2 | C1 | O1 | H1 | 129.4° | 122.1° |
| C1 | C2 | O2 | C3 | 121.5° | 111.6° |
| C1 | C2 | O2 | H2 | 119.9° | 124.2° |
| C1 | C2 | C3 | H2 | 120.2° | 118.0° |
| C1 | C2 | O2 | HO2 | 180.0° | 61.4° |
| C1 | C2 | C3 | O3 | 88.3° | 152.5° |
| C1 | C2 | C3 | H3 | 152.9° | 84.1° |
| C2 | C1 | O1 | P | 106.6° | 152.7° |
| O1 | C1 | C2 | O2 | 46.0° | 37.5° |
| O1 | C1 | C2 | C3 | 79.3° | 155.4° |
| O1 | C1 | C2 | H2 | 161.6° | 86.6° |
| C1 | O1 | P | O1P | 179.1° | 60.0° |
| C1 | O1 | P | O2P | 55.3° | 180.0° |
| C1 | O1 | P | O3P | 52.0° | 60.0° |
| H1 | C1 | C2 | O2 | 79.1° | 159.6° |
| H1 | C1 | C2 | C3 | 155.6° | 82.5° |
| H1 | C1 | C2 | H2 | 36.5° | 35.5° |
| H1 | C1 | O1 | P | 22.8° | 30.6° |
| O2 | C2 | C3 | H2 | 115.5° | 124.1° |
| O2 | C2 | C3 | O3 | 36.0° | 34.6° |
| O2 | C2 | C3 | H3 | 82.8° | 158.0° |
| C3 | C2 | O2 | HO2 | 58.5° | 173.0° |
| C2 | C3 | O3 | H3 | 125.4° | 123.5° |
| C2 | C3 | O3 | HO3 | 67.9° | 61.5° |
| H2 | C2 | O2 | HO2 | 60.2° | 62.8° |
| H2 | C2 | C3 | O3 | 151.4° | 89.5° |
| H2 | C2 | C3 | H3 | 32.7° | 33.9° |
| H3 | C3 | O3 | HO3 | 57.5° | 62.0° |
| O1 | P | O1P | O2P | 109.4° | 120.1° |
| O1 | P | O1P | O3P | 122.3° | 120.0° |
| O1 | P | O2P | O3P | 106.3° | 120.0° |
| O1 | P | O2P | HOP2 | 180.0° | 180.0° |
| O1 | P | O3P | HOP3 | 180.0° | 60.0° |
| O1P | P | O2P | O3P | 133.4° | 119.9° |
| O1P | P | O2P | HOP2 | 59.7° | 60.0° |
| O1P | P | O3P | HOP3 | 52.9° | 180.0° |
| O2P | P | O3P | HOP3 | 81.4° | 60.1° |
| O3P | P | O2P | HOP2 | 73.7° | 60.0° |
