R1A
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OXT | C | sing | 1.35Å | 1.22Å | |
OXT | HXT | sing | 0.98Å | 0.95Å | |
C | CA | sing | 1.52Å | 1.52Å | |
C | O | doub | 1.22Å | 34.31Å | |
CA | N | sing | 1.44Å | 1.46Å | |
CA | CB | sing | 1.53Å | 1.54Å | |
CA | HA | sing | 1.10Å | 1.10Å | |
N | H | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
CB | SG | sing | 1.81Å | 1.77Å | |
CB | HB2 | sing | 1.10Å | 1.10Å | |
CB | HB3 | sing | 1.09Å | 1.10Å | |
SG | SD | sing | 2.06Å | 1.99Å | |
SD | CE | sing | 1.81Å | 1.77Å | |
CE | C3 | sing | 1.49Å | 1.52Å | |
CE | HE2 | sing | 1.09Å | 1.10Å | |
CE | HE3 | sing | 1.09Å | 1.10Å | |
C3 | C2 | sing | 1.51Å | 1.51Å | |
C3 | C4 | doub | 1.34Å | 1.34Å | |
C2 | C9 | sing | 1.52Å | 1.53Å | |
C2 | C8 | sing | 1.52Å | 1.53Å | |
C2 | N1 | sing | 1.49Å | 1.46Å | |
C9 | H91 | sing | 1.09Å | 1.10Å | |
C9 | H92 | sing | 1.09Å | 1.10Å | |
C9 | H93 | sing | 1.09Å | 1.10Å | |
C8 | H81 | sing | 1.09Å | 1.10Å | |
C8 | H82 | sing | 1.09Å | 1.10Å | |
C8 | H83 | sing | 1.09Å | 1.10Å | |
C4 | C5 | sing | 1.50Å | 1.51Å | |
C4 | H4 | sing | 1.08Å | 1.08Å | |
C5 | C7 | sing | 1.52Å | 1.52Å | |
C5 | C6 | sing | 1.52Å | 1.53Å | |
C5 | N1 | sing | 1.49Å | 1.46Å | |
C7 | H71 | sing | 1.09Å | 1.10Å | |
C7 | H72 | sing | 1.09Å | 1.10Å | |
C7 | H73 | sing | 1.09Å | 1.10Å | |
C6 | H61 | sing | 1.09Å | 1.10Å | |
C6 | H62 | sing | 1.09Å | 1.10Å | |
C6 | H63 | sing | 1.09Å | 1.10Å | |
N1 | O1 | doub | 1.27Å | 1.28Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C | OXT | HXT | 109.5° | 112.0° |
OXT | C | CA | 119.8° | 113.3° |
OXT | C | O | 124.0° | 123.0° |
CA | C | O | 115.7° | 123.8° |
C | CA | N | 110.0° | 111.9° |
C | CA | CB | 111.9° | 112.4° |
C | CA | HA | 107.6° | 106.1° |
N | CA | CB | 109.9° | 112.0° |
N | CA | HA | 109.7° | 105.2° |
CA | N | H | 109.4° | 119.0° |
CA | N | H2 | 109.5° | 119.0° |
CB | CA | HA | 107.7° | 108.8° |
CA | CB | SG | 112.9° | 113.7° |
CA | CB | HB2 | 107.6° | 109.8° |
CA | CB | HB3 | 108.3° | 110.4° |
H | N | H2 | 109.5° | 120.6° |
SG | CB | HB2 | 107.6° | 107.3° |
SG | CB | HB3 | 108.4° | 107.6° |
CB | SG | SD | 109.4° | 101.7° |
HB2 | CB | HB3 | 112.2° | 107.7° |
SG | SD | CE | 111.3° | 101.8° |
SD | CE | C3 | 109.9° | 110.0° |
SD | CE | HE2 | 109.2° | 109.4° |
SD | CE | HE3 | 109.3° | 109.5° |
C3 | CE | HE2 | 109.2° | 109.8° |
C3 | CE | HE3 | 109.3° | 109.9° |
CE | C3 | C2 | 126.9° | 122.0° |
CE | C3 | C4 | 121.4° | 125.5° |
HE2 | CE | HE3 | 109.8° | 108.3° |
C2 | C3 | C4 | 111.6° | 112.5° |
C3 | C2 | C9 | 111.3° | 113.6° |
C3 | C2 | C8 | 111.0° | 113.6° |
C3 | C2 | N1 | 102.1° | 99.6° |
C3 | C4 | C5 | 110.8° | 113.2° |
C3 | C4 | H4 | 124.7° | 124.0° |
C9 | C2 | C8 | 109.2° | 113.4° |
C9 | C2 | N1 | 109.8° | 107.6° |
C2 | C9 | H91 | 109.5° | 110.5° |
C2 | C9 | H92 | 109.5° | 110.6° |
C2 | C9 | H93 | 109.5° | 110.6° |
C8 | C2 | N1 | 113.3° | 107.7° |
C2 | C8 | H81 | 109.5° | 110.6° |
C2 | C8 | H82 | 109.5° | 110.5° |
C2 | C8 | H83 | 109.5° | 110.5° |
C2 | N1 | C5 | 112.9° | 114.9° |
C2 | N1 | O1 | 124.0° | 122.6° |
H91 | C9 | H92 | 109.5° | 108.4° |
H91 | C9 | H93 | 109.5° | 108.3° |
H92 | C9 | H93 | 109.4° | 108.4° |
H81 | C8 | H82 | 109.5° | 108.4° |
H81 | C8 | H83 | 109.4° | 108.3° |
H82 | C8 | H83 | 109.5° | 108.4° |
C5 | C4 | H4 | 124.6° | 122.9° |
C4 | C5 | C7 | 109.1° | 113.1° |
C4 | C5 | C6 | 109.3° | 113.0° |
C4 | C5 | N1 | 102.5° | 99.8° |
C7 | C5 | C6 | 111.4° | 113.2° |
C7 | C5 | N1 | 112.8° | 108.4° |
C5 | C7 | H71 | 109.5° | 110.6° |
C5 | C7 | H72 | 109.5° | 110.6° |
C5 | C7 | H73 | 109.5° | 110.6° |
C6 | C5 | N1 | 111.3° | 108.4° |
C5 | C6 | H61 | 109.4° | 110.5° |
C5 | C6 | H62 | 109.5° | 110.6° |
C5 | C6 | H63 | 109.5° | 110.5° |
C5 | N1 | O1 | 123.1° | 122.5° |
H71 | C7 | H72 | 109.5° | 108.3° |
H71 | C7 | H73 | 109.5° | 108.3° |
H72 | C7 | H73 | 109.5° | 108.3° |
H61 | C6 | H62 | 109.5° | 108.4° |
H61 | C6 | H63 | 109.5° | 108.4° |
H62 | C6 | H63 | 109.5° | 108.3° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OXT | C | CA | O | 171.7° | 179.3° |
OXT | C | CA | N | 137.7° | 175.0° |
OXT | C | CA | CB | 99.9° | 58.0° |
OXT | C | CA | HA | 18.2° | 60.7° |
HXT | OXT | C | CA | 170.9° | 179.3° |
HXT | OXT | C | O | 0.0° | 0.0° |
C | CA | N | CB | 123.6° | 127.2° |
C | CA | N | HA | 118.2° | 114.8° |
C | CA | CB | HA | 118.0° | 117.2° |
C | CA | N | H | 98.9° | 69.4° |
C | CA | N | H2 | 141.1° | 124.0° |
C | CA | CB | SG | 52.8° | 59.7° |
C | CA | CB | HB2 | 65.8° | 180.0° |
C | CA | CB | HB3 | 172.8° | 61.4° |
O | C | CA | N | 50.6° | 5.8° |
O | C | CA | CB | 71.8° | 121.2° |
O | C | CA | HA | 170.1° | 120.0° |
N | CA | CB | HA | 119.5° | 115.9° |
CA | N | H | H2 | 120.0° | 166.3° |
N | CA | CB | SG | 175.3° | 67.2° |
N | CA | CB | HB2 | 56.7° | 53.0° |
N | CA | CB | HB3 | 64.7° | 171.6° |
CB | CA | N | H | 137.5° | 163.3° |
CB | CA | N | H2 | 17.5° | 3.2° |
CA | CB | SG | HB2 | 118.5° | 121.7° |
CA | CB | SG | HB3 | 120.0° | 122.7° |
CA | CB | HB2 | HB3 | 119.0° | 120.3° |
CA | CB | SG | SD | 80.0° | 180.0° |
HA | CA | N | H | 19.2° | 45.3° |
HA | CA | N | H2 | 100.7° | 121.2° |
HA | CA | CB | SG | 65.3° | 176.9° |
HA | CA | CB | HB2 | 176.2° | 62.9° |
HA | CA | CB | HB3 | 54.7° | 55.8° |
SG | CB | HB2 | HB3 | 119.1° | 115.6° |
CB | SG | SD | CE | 77.0° | 90.0° |
HB2 | CB | SG | SD | 161.5° | 58.3° |
HB3 | CB | SG | SD | 40.0° | 57.3° |
SG | SD | CE | C3 | 163.0° | 180.0° |
SG | SD | CE | HE2 | 43.2° | 59.4° |
SG | SD | CE | HE3 | 77.0° | 59.1° |
SD | CE | C3 | HE2 | 119.8° | 120.4° |
SD | CE | C3 | HE3 | 120.0° | 120.6° |
SD | CE | HE2 | HE3 | 119.9° | 119.2° |
SD | CE | C3 | C2 | 92.4° | 89.6° |
SD | CE | C3 | C4 | 88.4° | 90.4° |
C3 | CE | HE2 | HE3 | 119.9° | 120.0° |
CE | C3 | C2 | C4 | 179.3° | 180.0° |
CE | C3 | C2 | C9 | 63.9° | 65.8° |
CE | C3 | C2 | C8 | 58.1° | 65.9° |
CE | C3 | C2 | N1 | 179.1° | 179.9° |
CE | C3 | C4 | C5 | 177.1° | 180.0° |
CE | C3 | C4 | H4 | 2.9° | 0.0° |
HE2 | CE | C3 | C2 | 147.8° | 150.0° |
HE2 | CE | C3 | C4 | 31.4° | 30.0° |
HE3 | CE | C3 | C2 | 27.7° | 31.0° |
HE3 | CE | C3 | C4 | 151.6° | 149.1° |
C3 | C2 | C9 | C8 | 123.0° | 131.8° |
C3 | C2 | C9 | N1 | 112.3° | 109.3° |
C3 | C2 | C8 | N1 | 114.2° | 109.3° |
C3 | C2 | C9 | H91 | 21.3° | 84.6° |
C3 | C2 | C9 | H92 | 141.4° | 155.4° |
C3 | C2 | C9 | H93 | 98.7° | 35.3° |
C3 | C2 | C8 | H81 | 41.3° | 63.5° |
C3 | C2 | C8 | H82 | 161.3° | 56.6° |
C3 | C2 | C8 | H83 | 78.6° | 176.6° |
C2 | C3 | C4 | C5 | 2.2° | 0.0° |
C2 | C3 | C4 | H4 | 177.8° | 180.0° |
C3 | C2 | N1 | C5 | 2.0° | 0.2° |
C3 | C2 | N1 | O1 | 178.3° | 180.0° |
C4 | C3 | C2 | C9 | 116.9° | 114.3° |
C4 | C3 | C2 | C8 | 121.2° | 114.1° |
C4 | C3 | C2 | N1 | 0.2° | 0.1° |
C3 | C4 | C5 | H4 | 180.0° | 180.0° |
C3 | C4 | C5 | C7 | 123.1° | 114.8° |
C3 | C4 | C5 | C6 | 114.9° | 114.9° |
C3 | C4 | C5 | N1 | 3.3° | 0.1° |
C9 | C2 | C8 | N1 | 122.7° | 118.9° |
C2 | C9 | H91 | H92 | 120.0° | 121.3° |
C2 | C9 | H91 | H93 | 120.0° | 121.3° |
C2 | C9 | H92 | H93 | 120.0° | 121.4° |
C9 | C2 | C8 | H81 | 81.8° | 68.3° |
C9 | C2 | C8 | H82 | 38.2° | 171.6° |
C9 | C2 | C8 | H83 | 158.2° | 51.6° |
C9 | C2 | N1 | C5 | 120.2° | 118.9° |
C9 | C2 | N1 | O1 | 60.1° | 61.2° |
C8 | C2 | C9 | H91 | 144.3° | 47.2° |
C8 | C2 | C9 | H92 | 95.7° | 72.8° |
C8 | C2 | C9 | H93 | 24.3° | 167.1° |
C2 | C8 | H81 | H82 | 120.0° | 121.3° |
C2 | C8 | H81 | H83 | 120.0° | 121.2° |
C2 | C8 | H82 | H83 | 120.0° | 121.3° |
C8 | C2 | N1 | C5 | 117.4° | 118.6° |
C8 | C2 | N1 | O1 | 62.3° | 61.3° |
N1 | C2 | C9 | H91 | 90.9° | 166.1° |
N1 | C2 | C9 | H92 | 29.1° | 46.1° |
N1 | C2 | C9 | H93 | 149.1° | 73.9° |
N1 | C2 | C8 | H81 | 155.5° | 172.7° |
N1 | C2 | C8 | H82 | 84.5° | 52.7° |
N1 | C2 | C8 | H83 | 35.5° | 67.3° |
C2 | N1 | C5 | C4 | 3.2° | 0.1° |
C2 | N1 | C5 | C7 | 120.4° | 118.3° |
C2 | N1 | C5 | C6 | 113.5° | 118.5° |
C2 | N1 | C5 | O1 | 179.7° | 179.9° |
H91 | C9 | H92 | H93 | 120.0° | 117.3° |
H81 | C8 | H82 | H83 | 120.0° | 117.4° |
C4 | C5 | C7 | C6 | 120.7° | 130.2° |
C4 | C5 | C7 | N1 | 113.2° | 109.6° |
C4 | C5 | C6 | N1 | 112.5° | 109.6° |
C4 | C5 | C7 | H71 | 55.5° | 1.1° |
C4 | C5 | C7 | H72 | 175.5° | 121.1° |
C4 | C5 | C7 | H73 | 64.5° | 118.9° |
C4 | C5 | C6 | H61 | 1.3° | 94.9° |
C4 | C5 | C6 | H62 | 121.3° | 25.1° |
C4 | C5 | C6 | H63 | 118.7° | 145.0° |
C4 | C5 | N1 | O1 | 177.1° | 180.0° |
H4 | C4 | C5 | C7 | 56.9° | 65.2° |
H4 | C4 | C5 | C6 | 65.1° | 65.1° |
H4 | C4 | C5 | N1 | 176.7° | 179.9° |
C7 | C5 | C6 | N1 | 126.9° | 120.2° |
C5 | C7 | H71 | H72 | 120.0° | 121.3° |
C5 | C7 | H71 | H73 | 120.0° | 121.4° |
C5 | C7 | H72 | H73 | 120.0° | 121.4° |
C7 | C5 | C6 | H61 | 121.9° | 35.2° |
C7 | C5 | C6 | H62 | 118.1° | 155.2° |
C7 | C5 | C6 | H63 | 1.9° | 84.8° |
C7 | C5 | N1 | O1 | 59.9° | 61.6° |
C6 | C5 | C7 | H71 | 65.2° | 129.0° |
C6 | C5 | C7 | H72 | 54.8° | 9.1° |
C6 | C5 | C7 | H73 | 174.8° | 111.0° |
C5 | C6 | H61 | H62 | 120.0° | 121.3° |
C5 | C6 | H61 | H63 | 120.0° | 121.3° |
C5 | C6 | H62 | H63 | 120.0° | 121.3° |
C6 | C5 | N1 | O1 | 66.2° | 61.6° |
N1 | C5 | C7 | H71 | 168.7° | 110.7° |
N1 | C5 | C7 | H72 | 71.3° | 129.3° |
N1 | C5 | C7 | H73 | 48.7° | 9.3° |
N1 | C5 | C6 | H61 | 111.2° | 155.5° |
N1 | C5 | C6 | H62 | 8.8° | 84.5° |
N1 | C5 | C6 | H63 | 128.8° | 35.5° |
H71 | C7 | H72 | H73 | 120.0° | 117.3° |
H61 | C6 | H62 | H63 | 120.0° | 117.4° |