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Summary Geometry Related PDB entries

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Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	sing	1.36Å	1.36Å
C1	C10	doub	1.38Å	1.37Å	Aromatic
C1	C2	sing	1.40Å	1.40Å	Aromatic
C10	C9	sing	1.41Å	1.42Å	Aromatic
C2	C3	doub	1.37Å	1.38Å	Aromatic
C9	C8	sing	1.41Å	1.42Å	Aromatic
C9	C4	doub	1.42Å	1.42Å	Aromatic
C3	C4	sing	1.41Å	1.42Å	Aromatic
C3	O2	sing	1.36Å	1.36Å
C8	C7	doub	1.38Å	1.37Å	Aromatic
C4	C5	sing	1.41Å	1.42Å	Aromatic
C7	O4	sing	1.36Å	1.36Å
C7	C6	sing	1.40Å	1.40Å	Aromatic
C5	C6	doub	1.37Å	1.37Å	Aromatic
C5	O3	sing	1.36Å	1.35Å
C2	H1	sing	1.08Å	1.08Å
C6	H2	sing	1.08Å	1.08Å
C8	H3	sing	1.08Å	1.08Å
O1	H4	sing	0.97Å	0.95Å
O2	H5	sing	0.97Å	0.95Å
O3	H6	sing	0.97Å	0.95Å
O4	H7	sing	0.97Å	0.95Å
C10	H8	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C10	120.3°	119.6°
O1	C1	C2	118.4°	119.6°
C1	O1	H4	109.5°	114.0°
C10	C1	C2	121.2°	120.7°
C1	C10	C9	120.2°	119.6°
C1	C10	H8	119.9°	120.2°
C1	C2	C3	119.9°	120.9°
C1	C2	H1	120.0°	119.5°
C10	C9	C8	122.2°	121.1°
C10	C9	C4	119.1°	119.4°
C9	C10	H8	119.9°	120.1°
C2	C3	C4	120.7°	119.8°
C2	C3	O2	118.9°	120.1°
C3	C2	H1	120.1°	119.6°
C8	C9	C4	118.7°	119.4°
C9	C8	C7	120.4°	119.6°
C9	C8	H3	119.8°	120.1°
C9	C4	C3	118.9°	119.5°
C9	C4	C5	119.0°	119.5°
C4	C3	O2	120.4°	120.0°
C3	C4	C5	122.1°	121.1°
C3	O2	H5	109.5°	113.9°
C8	C7	O4	121.7°	119.6°
C8	C7	C6	121.3°	120.7°
C7	C8	H3	119.8°	120.2°
C4	C5	C6	120.6°	119.8°
C4	C5	O3	121.2°	120.0°
O4	C7	C6	117.0°	119.6°
C7	O4	H7	109.5°	114.0°
C7	C6	C5	119.9°	120.9°
C7	C6	H2	120.0°	119.5°
C6	C5	O3	118.2°	120.1°
C5	C6	H2	120.0°	119.6°
C5	O3	H6	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C10	C2	180.0°	179.9°
O1	C1	C10	C9	179.7°	179.5°
O1	C1	C2	C3	180.0°	180.0°
O1	C1	C2	H1	0.0°	0.3°
O1	C1	C10	H8	0.3°	0.1°
C1	C10	C9	H8	180.0°	179.6°
C10	C1	C2	C3	0.1°	0.1°
C1	C10	C9	C8	179.7°	179.9°
C1	C10	C9	C4	0.7°	0.7°
C10	C1	C2	H1	179.9°	179.8°
C10	C1	O1	H4	180.0°	90.0°
C2	C1	C10	C9	0.3°	0.4°
C1	C2	C3	H1	180.0°	179.7°
C1	C2	C3	C4	0.2°	0.2°
C1	C2	C3	O2	179.6°	179.8°
C2	C1	O1	H4	0.0°	90.1°
C2	C1	C10	H8	179.6°	180.0°
C10	C9	C8	C4	179.0°	179.4°
C10	C9	C4	C3	0.8°	0.5°
C10	C9	C8	C7	179.3°	179.5°
C10	C9	C4	C5	179.5°	179.5°
C10	C9	C8	H3	0.6°	0.5°
C2	C3	C4	C9	0.5°	0.0°
C2	C3	C4	O2	179.5°	180.0°
C2	C3	C4	C5	179.7°	180.0°
C2	C3	O2	H5	180.0°	90.0°
C8	C9	C4	C3	179.8°	180.0°
C9	C8	C7	H3	180.0°	180.0°
C8	C9	C4	C5	0.4°	0.1°
C9	C8	C7	O4	179.4°	180.0°
C9	C8	C7	C6	0.4°	0.0°
C8	C9	C10	H8	0.3°	0.3°
C9	C4	C3	C5	179.8°	180.0°
C9	C4	C3	O2	180.0°	179.9°
C4	C9	C8	C7	0.3°	0.0°
C9	C4	C5	C6	0.1°	0.0°
C9	C4	C5	O3	179.6°	179.9°
C4	C9	C8	H3	179.7°	179.9°
C4	C9	C10	H8	179.3°	179.7°
C3	C4	C5	C6	179.6°	180.0°
C3	C4	C5	O3	0.1°	0.1°
C4	C3	C2	H1	179.8°	180.0°
C4	C3	O2	H5	0.5°	90.0°
O2	C3	C4	C5	0.3°	0.1°
O2	C3	C2	H1	0.4°	0.0°
C8	C7	O4	C6	179.8°	180.0°
C8	C7	C6	C5	1.0°	0.0°
C8	C7	C6	H2	179.0°	180.0°
C8	C7	O4	H7	180.0°	90.0°
C4	C5	C6	C7	0.8°	0.0°
C4	C5	C6	O3	179.5°	179.9°
C4	C5	C6	H2	179.1°	180.0°
C4	C5	O3	H6	180.0°	90.0°
O4	C7	C6	C5	178.8°	180.0°
O4	C7	C6	H2	1.2°	0.0°
O4	C7	C8	H3	0.5°	0.1°
C7	C6	C5	H2	180.0°	180.0°
C7	C6	C5	O3	179.7°	180.0°
C6	C7	C8	H3	179.6°	180.0°
C6	C7	O4	H7	0.2°	90.1°
C6	C5	O3	H6	0.5°	90.0°
O3	C5	C6	H2	0.4°	0.0°

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PDB entries from 2026-01-21

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