Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

QSO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C2sing1.33Å1.39Å
O1C8Asing1.35Å1.38Å
C8C8Adoub1.39Å1.44ÅAromatic
C8C7sing1.39Å1.43ÅAromatic
C2C3doub1.36Å1.37Å
O4C7sing1.36Å1.35Å
C8AC4Asing1.41Å1.44ÅAromatic
C7C6doub1.39Å1.42ÅAromatic
C6'C5'doub1.38Å1.42ÅAromatic
C6'C1'sing1.39Å1.43ÅAromatic
C3C1'sing1.48Å1.50Å
C3C4sing1.48Å1.52Å
C5'C4'sing1.39Å1.43ÅAromatic
C1'C2'doub1.39Å1.43ÅAromatic
C4AC4sing1.47Å1.51Å
C4AC5doub1.40Å1.52ÅAromatic
CMO5sing1.43Å1.42Å
C6C5sing1.38Å1.50ÅAromatic
C4O2doub1.22Å1.23Å
C4'O5sing1.36Å1.38Å
C4'C3'doub1.39Å1.43ÅAromatic
C2'C3'sing1.38Å1.42ÅAromatic
C5O3sing1.36Å1.36Å
C2H2sing1.08Å1.08Å
O4HO4sing0.97Å0.95Å
C6H6sing1.08Å1.08Å
C8H8sing1.08Å1.08Å
C2'H2'sing1.08Å1.08Å
C3'H3'sing1.08Å1.08Å
C5'H5'sing1.08Å1.08Å
C6'H6'sing1.08Å1.08Å
O3HO3sing0.97Å0.95Å
CMHM1sing1.09Å1.10Å
CMHM2sing1.09Å1.10Å
CMHM3sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2O1C8A118.4°121.3°
O1C2C3126.4°123.1°
O1C2H2116.8°118.4°
O1C8AC8118.1°120.5°
O1C8AC4A123.6°120.4°
C8AC8C7125.1°120.2°
C8C8AC4A118.3°119.1°
C8AC8H8117.5°119.9°
C8C7O4120.6°119.6°
C8C7C6118.1°120.8°
C7C8H8117.4°119.9°
C2C3C1'121.2°121.0°
C2C3C4117.4°118.1°
C3C2H2116.8°118.5°
O4C7C6121.3°119.6°
C7O4HO4109.5°114.0°
C8AC4AC4117.4°118.1°
C8AC4AC5119.8°120.4°
C7C6C5121.5°120.1°
C7C6H6119.2°120.0°
C5'C6'C1'121.3°119.9°
C6'C5'C4'121.8°120.1°
C6'C5'H5'119.1°120.0°
C5'C6'H6'119.3°120.0°
C6'C1'C3120.9°120.0°
C6'C1'C2'117.1°119.9°
C1'C6'H6'119.4°120.0°
C1'C3C4121.4°120.9°
C3C1'C2'122.0°120.1°
C3C4C4A116.7°115.8°
C3C4O2120.9°122.1°
C5'C4'O5121.0°120.0°
C5'C4'C3'116.8°120.1°
C4'C5'H5'119.1°120.0°
C1'C2'C3'121.3°120.0°
C1'C2'H2'119.4°120.1°
C4C4AC5122.8°121.4°
C4AC4O2122.4°122.1°
C4AC5C6117.3°119.4°
C4AC5O3124.1°120.2°
CMO5C4'115.4°117.0°
O5CMHM1109.5°109.5°
O5CMHM2109.4°109.5°
O5CMHM3109.4°109.5°
C6C5O3118.6°120.3°
C5C6H6119.2°119.9°
O5C4'C3'122.2°119.9°
C4'C3'C2'121.8°120.0°
C4'C3'H3'119.1°119.9°
C3'C2'H2'119.3°120.0°
C2'C3'H3'119.1°120.0°
C5O3HO3109.5°114.0°
HM1CMHM2109.5°109.5°
HM1CMHM3109.4°109.4°
HM2CMHM3109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2O1C8AC8179.8°164.7°
O1C2C3H2180.0°179.7°
C2O1C8AC4A1.0°16.4°
O1C2C3C1'179.8°179.4°
O1C2C3C40.2°0.6°
O1C8AC8C4A179.2°178.9°
O1C8AC8C7180.0°178.5°
C8AO1C2C30.6°16.0°
O1C8AC4AC41.0°2.0°
O1C8AC4AC5179.9°178.6°
C8AO1C2H2179.4°163.7°
O1C8AC8H80.0°1.5°
C8AC8C7H8180.0°180.0°
C8AC8C7O4179.7°180.0°
C8AC8C7C60.4°0.4°
C8C8AC4AC4179.9°179.1°
C8C8AC4AC50.9°0.3°
C8C7O4C6179.9°179.5°
C7C8C8AC4A0.8°0.4°
C8C7C6C50.2°0.3°
C8C7O4HO4169.0°89.5°
C8C7C6H6179.8°179.7°
C2C3C1'C6'60.4°115.3°
C2C3C1'C4179.5°180.0°
C2C3C1'C2'119.3°64.9°
C2C3C4C4A0.1°12.8°
C2C3C4O2179.6°167.2°
O4C7C6C5179.9°179.8°
O4C7C6H60.1°0.2°
O4C7C8H80.3°0.0°
C8AC4AC4C30.5°12.0°
C8AC4AC4C5178.9°179.4°
C8AC4AC5C60.7°0.1°
C8AC4AC4O2180.0°168.0°
C8AC4AC5O3179.6°179.9°
C4AC8AC8H8179.2°179.6°
C7C6C5C4A0.4°0.1°
C7C6C5H6180.0°180.0°
C7C6C5O3180.0°179.9°
C6C7O4HO411.1°90.0°
C6C7C8H8179.6°179.6°
C5'C6'C1'H6'180.0°179.5°
C5'C6'C1'C3180.0°179.7°
C6'C5'C4'H5'180.0°179.8°
C5'C6'C1'C2'0.2°0.5°
C6'C5'C4'O5179.5°179.7°
C6'C5'C4'C3'0.1°0.2°
C6'C1'C3C2'179.8°179.8°
C6'C1'C3C4120.0°64.8°
C1'C6'C5'C4'0.1°0.5°
C6'C1'C2'C3'0.3°0.2°
C6'C1'C2'H2'179.7°179.7°
C1'C6'C5'H5'180.0°179.7°
C1'C3C4C4A179.7°167.2°
C1'C3C4O20.8°12.8°
C3C1'C2'C3'179.9°180.0°
C1'C3C2H20.2°0.9°
C3C1'C2'H2'0.1°0.0°
C3C1'C6'H6'0.0°0.2°
C4C3C1'C2'60.2°115.0°
C3C4C4AO2179.5°180.0°
C3C4C4AC5179.4°167.4°
C4C3C2H2179.8°179.1°
C5'C4'O5CM99.7°0.0°
C5'C4'O5C3'179.6°180.0°
C5'C4'C3'C2'0.0°0.0°
C5'C4'C3'H3'180.0°180.0°
C4'C5'C6'H6'179.9°180.0°
C1'C2'C3'C4'0.2°0.1°
C1'C2'C3'H2'180.0°180.0°
C1'C2'C3'H3'179.9°180.0°
C2'C1'C6'H6'179.8°180.0°
C4C4AC5C6179.6°179.3°
C4C4AC5O30.7°0.7°
C4AC5C6O3179.6°180.0°
C5C4AC4O21.1°12.6°
C4AC5C6H6179.6°179.9°
C4AC5O3HO315.4°89.9°
CMO5C4'C3'80.7°180.0°
O5CMHM1HM2120.0°120.0°
O5CMHM1HM3120.0°120.0°
O5CMHM2HM3120.0°120.1°
C6C5O3HO3164.2°90.0°
O5C4'C3'C2'179.6°180.0°
O5C4'C3'H3'0.4°0.0°
O5C4'C5'H5'0.5°0.1°
C4'O5CMHM167.8°60.1°
C4'O5CMHM252.2°60.0°
C4'O5CMHM3172.2°180.0°
C4'C3'C2'H3'180.0°179.9°
C4'C3'C2'H2'179.8°180.0°
C3'C4'C5'H5'179.9°179.9°
O3C5C6H60.0°0.1°
H2'C2'C3'H3'0.2°0.0°
H5'C5'C6'H6'0.0°0.2°
HM1CMHM2HM3120.0°119.9°

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon