QPJ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O22 | P2 | doub | 1.48Å | 1.77Å | |
| O32 | P2 | sing | 1.61Å | 1.77Å | |
| P2 | OPP | sing | 1.61Å | 1.70Å | |
| OPP | C1' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.53Å | 1.51Å | |
| C1' | C2' | sing | 1.53Å | 1.51Å | |
| C1' | C4' | sing | 1.53Å | 1.52Å | |
| C4' | O4' | sing | 1.43Å | 1.44Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| OP3 | P | doub | 1.48Å | 1.51Å | |
| O5' | P | sing | 1.61Å | 1.61Å | |
| P | OP2 | sing | 1.61Å | 1.52Å | |
| P | OP1 | sing | 1.61Å | 1.52Å | |
| C2' | H1 | sing | 1.09Å | 1.10Å | |
| C2' | H2 | sing | 1.09Å | 1.10Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| O4' | H6 | sing | 0.97Å | 0.95Å | |
| C1' | H7 | sing | 1.09Å | 1.10Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| C3' | H9 | sing | 1.09Å | 1.10Å | |
| OP1 | H11 | sing | 0.97Å | 0.95Å | |
| OP2 | H12 | sing | 0.97Å | 0.95Å | |
| O32 | H13 | sing | 0.97Å | 0.95Å | |
| C3' | O2 | sing | 1.43Å | 1.45Å | |
| P2 | O1 | sing | 1.61Å | 1.52Å | |
| O2 | H10 | sing | 0.97Å | 0.95Å | |
| O1 | H14 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O22 | P2 | O32 | 122.4° | 109.5° |
| O22 | P2 | OPP | 116.2° | 109.5° |
| O22 | P2 | O1 | 98.9° | 109.4° |
| O32 | P2 | OPP | 119.9° | 109.5° |
| P2 | O32 | H13 | 109.5° | 114.0° |
| O32 | P2 | O1 | 91.7° | 109.5° |
| P2 | OPP | C1' | 109.2° | 123.0° |
| OPP | P2 | O1 | 91.8° | 109.5° |
| OPP | C1' | C2' | 108.6° | 109.5° |
| OPP | C1' | C4' | 111.9° | 109.4° |
| OPP | C1' | H7 | 108.4° | 109.5° |
| C3' | C2' | C1' | 109.7° | 109.5° |
| C3' | C2' | H1 | 109.4° | 109.4° |
| C3' | C2' | H2 | 109.4° | 109.5° |
| C2' | C3' | H8 | 109.9° | 109.5° |
| C2' | C3' | H9 | 109.9° | 109.5° |
| C2' | C3' | O2 | 107.8° | 109.5° |
| C2' | C1' | C4' | 112.9° | 109.5° |
| C1' | C2' | H1 | 109.4° | 109.5° |
| C1' | C2' | H2 | 109.4° | 109.5° |
| C2' | C1' | H7 | 107.5° | 109.5° |
| C1' | C4' | O4' | 112.9° | 109.4° |
| C1' | C4' | C5' | 111.4° | 109.5° |
| C1' | C4' | H5 | 107.6° | 109.5° |
| C4' | C1' | H7 | 107.4° | 109.5° |
| O4' | C4' | C5' | 108.4° | 109.5° |
| O4' | C4' | H5 | 108.7° | 109.5° |
| C4' | O4' | H6 | 109.5° | 114.0° |
| C4' | C5' | O5' | 105.6° | 109.5° |
| C4' | C5' | H3 | 110.4° | 109.5° |
| C4' | C5' | H4 | 110.4° | 109.5° |
| C5' | C4' | H5 | 107.7° | 109.5° |
| C5' | O5' | P | 123.8° | 123.0° |
| O5' | C5' | H3 | 110.4° | 109.5° |
| O5' | C5' | H4 | 110.4° | 109.4° |
| OP3 | P | O5' | 106.9° | 109.4° |
| OP3 | P | OP2 | 114.0° | 109.5° |
| OP3 | P | OP1 | 114.4° | 109.5° |
| O5' | P | OP2 | 102.6° | 109.4° |
| O5' | P | OP1 | 98.6° | 109.5° |
| OP2 | P | OP1 | 117.7° | 109.5° |
| P | OP2 | H12 | 109.5° | 114.0° |
| P | OP1 | H11 | 109.5° | 114.0° |
| H1 | C2' | H2 | 109.5° | 109.5° |
| H3 | C5' | H4 | 109.5° | 109.5° |
| H8 | C3' | H9 | 109.5° | 109.5° |
| H8 | C3' | O2 | 109.9° | 109.4° |
| H9 | C3' | O2 | 109.9° | 109.4° |
| C3' | O2 | H10 | 109.5° | 114.0° |
| P2 | O1 | H14 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O22 | P2 | O32 | OPP | 165.4° | 120.0° |
| O22 | P2 | O32 | O1 | 101.6° | 120.0° |
| O22 | P2 | OPP | O1 | 100.8° | 120.0° |
| O22 | P2 | OPP | C1' | 50.8° | 55.1° |
| O22 | P2 | O32 | H13 | 180.0° | 180.0° |
| O22 | P2 | O1 | H14 | 0.0° | 60.0° |
| O32 | P2 | OPP | O1 | 92.9° | 120.0° |
| O32 | P2 | OPP | C1' | 115.5° | 65.0° |
| O32 | P2 | O1 | H14 | 123.1° | 60.0° |
| P2 | OPP | C1' | C2' | 164.2° | 120.0° |
| P2 | OPP | C1' | C4' | 70.5° | 120.0° |
| P2 | OPP | C1' | H7 | 47.7° | 0.0° |
| OPP | P2 | O32 | H13 | 14.6° | 60.0° |
| OPP | P2 | O1 | H14 | 116.9° | 180.0° |
| OPP | C1' | C2' | C3' | 68.0° | 65.0° |
| OPP | C1' | C2' | C4' | 124.7° | 120.0° |
| OPP | C1' | C2' | H7 | 117.1° | 120.0° |
| OPP | C1' | C4' | H7 | 118.9° | 120.0° |
| OPP | C1' | C4' | O4' | 68.7° | 180.0° |
| OPP | C1' | C4' | C5' | 169.1° | 60.0° |
| OPP | C1' | C2' | H1 | 172.0° | 54.9° |
| OPP | C1' | C2' | H2 | 52.1° | 175.0° |
| OPP | C1' | C4' | H5 | 51.3° | 60.0° |
| C1' | OPP | P2 | O1 | 151.6° | 175.0° |
| C3' | C2' | C1' | H1 | 120.0° | 119.9° |
| C3' | C2' | C1' | H2 | 120.1° | 120.0° |
| C3' | C2' | C1' | C4' | 167.4° | 175.0° |
| C3' | C2' | H1 | H2 | 119.9° | 120.0° |
| C3' | C2' | C1' | H7 | 49.2° | 55.0° |
| C2' | C3' | H8 | H9 | 120.8° | 120.0° |
| C2' | C3' | H8 | O2 | 118.4° | 120.0° |
| C2' | C3' | H9 | O2 | 118.5° | 120.1° |
| C2' | C3' | O2 | H10 | 180.0° | 180.0° |
| C2' | C1' | C4' | H7 | 118.3° | 120.0° |
| C2' | C1' | C4' | O4' | 54.2° | 60.0° |
| C2' | C1' | C4' | C5' | 68.1° | 180.0° |
| C1' | C2' | H1 | H2 | 119.9° | 120.1° |
| C2' | C1' | C4' | H5 | 174.2° | 60.0° |
| C1' | C2' | C3' | H8 | 40.1° | 60.0° |
| C1' | C2' | C3' | H9 | 80.4° | 60.0° |
| C1' | C2' | C3' | O2 | 159.9° | 180.0° |
| C1' | C4' | O4' | C5' | 123.9° | 120.0° |
| C1' | C4' | O4' | H5 | 119.3° | 120.0° |
| C1' | C4' | C5' | H5 | 117.7° | 120.1° |
| C1' | C4' | C5' | O5' | 164.2° | 175.0° |
| C4' | C1' | C2' | H1 | 47.3° | 65.0° |
| C4' | C1' | C2' | H2 | 72.6° | 55.0° |
| C1' | C4' | C5' | H3 | 44.8° | 65.0° |
| C1' | C4' | C5' | H4 | 76.5° | 55.0° |
| C1' | C4' | O4' | H6 | 180.0° | 60.0° |
| O4' | C4' | C5' | H5 | 117.4° | 120.0° |
| O4' | C4' | C5' | O5' | 71.0° | 65.0° |
| O4' | C4' | C5' | H3 | 169.6° | 55.0° |
| O4' | C4' | C5' | H4 | 48.4° | 175.0° |
| O4' | C4' | C1' | H7 | 172.5° | 60.0° |
| C4' | C5' | O5' | H3 | 119.4° | 120.0° |
| C4' | C5' | O5' | H4 | 119.4° | 120.0° |
| C4' | C5' | O5' | P | 132.8° | 180.0° |
| C4' | C5' | H3 | H4 | 121.8° | 120.0° |
| C5' | C4' | O4' | H6 | 56.1° | 60.0° |
| C5' | C4' | C1' | H7 | 50.2° | 60.0° |
| C5' | O5' | P | OP3 | 78.9° | 55.0° |
| C5' | O5' | P | OP2 | 41.3° | 175.0° |
| C5' | O5' | P | OP1 | 162.3° | 65.0° |
| O5' | C5' | H3 | H4 | 121.8° | 120.0° |
| O5' | C5' | C4' | H5 | 46.4° | 55.0° |
| OP3 | P | O5' | OP2 | 120.2° | 120.0° |
| OP3 | P | O5' | OP1 | 118.9° | 120.0° |
| OP3 | P | OP2 | OP1 | 138.0° | 120.0° |
| OP3 | P | OP1 | H11 | 0.0° | 180.0° |
| OP3 | P | OP2 | H12 | 0.0° | 60.0° |
| O5' | P | OP2 | OP1 | 106.8° | 120.0° |
| P | O5' | C5' | H3 | 13.4° | 60.0° |
| P | O5' | C5' | H4 | 107.8° | 60.0° |
| O5' | P | OP1 | H11 | 113.0° | 60.0° |
| O5' | P | OP2 | H12 | 115.2° | 180.0° |
| OP2 | P | OP1 | H11 | 137.9° | 60.0° |
| OP1 | P | OP2 | H12 | 138.0° | 60.0° |
| H1 | C2' | C1' | H7 | 70.9° | 174.9° |
| H1 | C2' | C3' | H8 | 79.9° | 180.0° |
| H1 | C2' | C3' | H9 | 159.6° | 60.0° |
| H1 | C2' | C3' | O2 | 39.8° | 60.0° |
| H2 | C2' | C1' | H7 | 169.2° | 65.0° |
| H2 | C2' | C3' | H8 | 160.2° | 60.0° |
| H2 | C2' | C3' | H9 | 39.7° | 180.0° |
| H2 | C2' | C3' | O2 | 80.1° | 60.0° |
| H3 | C5' | C4' | H5 | 72.9° | 175.0° |
| H4 | C5' | C4' | H5 | 165.8° | 65.0° |
| H5 | C4' | O4' | H6 | 60.7° | 179.9° |
| H5 | C4' | C1' | H7 | 67.6° | NaN° |
| H8 | C3' | H9 | O2 | 120.8° | 119.9° |
| H8 | C3' | O2 | H10 | 60.3° | 60.0° |
| H9 | C3' | O2 | H10 | 60.2° | 59.9° |
| H13 | O32 | P2 | O1 | 78.4° | 60.0° |
