English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

QI6

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	C	sing	1.39Å	1.35Å
N1	C	doub	1.31Å	1.28Å	Aromatic
N1	N2	sing	1.40Å	1.38Å	Aromatic
C	C3	sing	1.47Å	1.47Å	Aromatic
N2	N3	sing	1.40Å	1.34Å	Aromatic
N2	C1	sing	1.37Å	1.36Å	Aromatic
C3	C4	sing	1.40Å	1.40Å	Aromatic
C3	C2	doub	1.41Å	1.40Å	Aromatic
C4	C5	doub	1.37Å	1.39Å	Aromatic
N3	C9	doub	1.31Å	1.33Å	Aromatic
C1	C2	sing	1.47Å	1.43Å	Aromatic
C1	C8	doub	1.38Å	1.36Å	Aromatic
C2	C7	sing	1.39Å	1.39Å	Aromatic
C5	C6	sing	1.39Å	1.38Å	Aromatic
C9	C8	sing	1.39Å	1.39Å	Aromatic
C7	C6	doub	1.37Å	1.38Å	Aromatic
C4	H1	sing	1.08Å	1.08Å
C5	H2	sing	1.08Å	1.08Å
C6	H3	sing	1.08Å	1.08Å
C8	H5	sing	1.08Å	1.08Å
N	H6	sing	0.97Å	1.00Å
N	H7	sing	0.97Å	1.00Å
C7	H8	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N	C	N1	111.8°	119.8°
N	C	C3	122.0°	119.9°
C	N	H6	109.5°	120.0°
C	N	H7	109.4°	120.1°
C	N1	N2	113.2°	122.7°
N1	C	C3	126.1°	120.3°
N1	N2	N3	119.1°	131.8°
N1	N2	C1	128.9°	120.9°
C	C3	C4	123.1°	121.8°
C	C3	C2	117.3°	118.6°
N3	N2	C1	112.0°	107.3°
N2	N3	C9	103.7°	108.9°
N2	C1	C2	116.4°	119.2°
N2	C1	C8	107.0°	107.4°
C4	C3	C2	119.6°	119.5°
C3	C4	C5	119.9°	119.5°
C3	C4	H1	120.1°	120.2°
C3	C2	C1	118.0°	118.2°
C3	C2	C7	119.7°	119.7°
C4	C5	C6	120.3°	120.9°
C5	C4	H1	120.0°	120.3°
C4	C5	H2	119.8°	119.6°
N3	C9	C8	113.1°	108.8°
N3	C9	H9	123.4°	125.6°
C2	C1	C8	136.5°	133.4°
C1	C2	C7	122.3°	122.1°
C1	C8	C9	104.2°	107.6°
C1	C8	H5	127.9°	126.2°
C2	C7	C6	120.0°	119.6°
C2	C7	H8	120.0°	120.2°
C5	C6	C7	120.4°	120.8°
C6	C5	H2	119.8°	119.5°
C5	C6	H3	119.8°	119.6°
C9	C8	H5	127.9°	126.2°
C8	C9	H9	123.5°	125.6°
C7	C6	H3	119.8°	119.6°
C6	C7	H8	120.0°	120.2°
H6	N	H7	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N	C	N1	C3	177.6°	179.9°
N	C	N1	N2	177.7°	179.7°
N	C	C3	C4	0.5°	0.1°
N	C	C3	C2	178.5°	179.3°
C	N	H6	H7	120.0°	180.0°
C	N1	N2	N3	177.2°	180.0°
C	N1	N2	C1	1.4°	0.0°
N1	C	C3	C4	178.0°	180.0°
N1	C	C3	C2	1.1°	0.6°
N1	C	N	H6	0.0°	180.0°
N1	C	N	H7	120.0°	0.0°
N2	N1	C	C3	0.1°	0.3°
N1	N2	N3	C1	178.8°	180.0°
N1	N2	N3	C9	179.1°	179.9°
N1	N2	C1	C2	1.7°	0.0°
N1	N2	C1	C8	178.9°	179.7°
C	C3	C4	C2	179.0°	179.4°
C	C3	C4	C5	179.7°	179.4°
C	C3	C2	C1	0.7°	0.6°
C	C3	C2	C7	179.3°	179.5°
C	C3	C4	H1	0.3°	0.6°
C3	C	N	H6	177.7°	0.1°
C3	C	N	H7	62.3°	180.0°
N3	N2	C1	C2	176.9°	180.0°
N3	N2	C1	C8	0.3°	0.3°
N2	N3	C9	C8	0.2°	0.1°
N2	N3	C9	H9	179.8°	179.8°
N2	C1	C2	C3	0.5°	0.4°
C1	N2	N3	C9	0.3°	0.1°
N2	C1	C2	C8	176.1°	179.6°
N2	C1	C2	C7	179.5°	179.7°
N2	C1	C8	C9	0.1°	0.3°
N2	C1	C8	H5	179.9°	179.7°
C3	C4	C5	H1	180.0°	180.0°
C4	C3	C2	C1	178.3°	180.0°
C4	C3	C2	C7	1.7°	0.0°
C3	C4	C5	C6	1.0°	0.0°
C3	C4	C5	H2	179.0°	179.9°
C2	C3	C4	C5	0.7°	0.0°
C3	C2	C1	C7	180.0°	179.9°
C3	C2	C1	C8	176.6°	180.0°
C3	C2	C7	C6	0.9°	0.0°
C2	C3	C4	H1	179.3°	180.0°
C3	C2	C7	H8	179.0°	180.0°
C4	C5	C6	H2	180.0°	179.9°
C4	C5	C6	C7	1.7°	0.1°
C4	C5	C6	H3	178.3°	180.0°
N3	C9	C8	C1	0.1°	0.3°
N3	C9	C8	H9	180.0°	179.7°
N3	C9	C8	H5	180.0°	179.8°
C2	C1	C8	C9	176.2°	180.0°
C1	C2	C7	C6	179.1°	180.0°
C2	C1	C8	H5	3.8°	0.1°
C1	C2	C7	H8	1.0°	0.1°
C8	C1	C2	C7	3.4°	0.1°
C1	C8	C9	H5	180.0°	179.9°
C1	C8	C9	H9	180.0°	180.0°
C2	C7	C6	C5	0.7°	0.1°
C2	C7	C6	H8	180.0°	179.9°
C2	C7	C6	H3	179.3°	180.0°
C5	C6	C7	H3	180.0°	180.0°
C6	C5	C4	H1	179.0°	180.0°
C5	C6	C7	H8	179.3°	180.0°
C7	C6	C5	H2	178.3°	179.9°
H1	C4	C5	H2	1.0°	0.1°
H2	C5	C6	H3	1.7°	0.1°
H3	C6	C7	H8	0.7°	0.1°
H5	C8	C9	H9	0.0°	0.1°

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon