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QDM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2MN3Qsing1.47Å1.47Å
O4QC4Qsing1.43Å1.42Å
C1MN3Qsing1.47Å1.49Å
N3QC3Qsing1.47Å1.48Å
C4QC3Qsing1.53Å1.54Å
C4QC5Qsing1.53Å1.55Å
C3QC2Qsing1.53Å1.54Å
C6QC5Qsing1.53Å1.56Å
C5QO5Qsing1.43Å1.39Å
C2QO2Qsing1.43Å1.46Å
C2QC1Qsing1.53Å1.53Å
O5QC1Qsing1.43Å1.48Å
C1QO3Bsing1.43Å1.40Å
O3BPBsing1.61Å1.70Å
O2BPBdoub1.48Å1.48Å
PBO1Bsing1.61Å1.50Å
PBO3Asing1.61Å1.58Å
O3APAsing1.61Å1.61Å
O2APAdoub1.48Å1.49Å
PAO1Asing1.61Å1.55Å
PAO5'sing1.61Å1.57Å
O5'C5'sing1.43Å1.42Å
O3'C3'sing1.43Å1.45Å
C4'C5'sing1.53Å1.51Å
C4'C3'sing1.54Å1.52Å
C4'O4'sing1.44Å1.43Å
C3'C2'sing1.55Å1.51Å
O4'C1'sing1.44Å1.41Å
C1'C2'sing1.55Å1.51Å
C1'N1sing1.47Å1.47Å
N1C6sing1.37Å1.33Å
N1C2sing1.34Å1.34Å
O2C2doub1.22Å1.36Å
C6C5doub1.35Å1.39Å
C2N3sing1.35Å1.35Å
C5C5Msing1.51Å1.50Å
C5C4sing1.42Å1.39Å
N3C4sing1.35Å1.36Å
C4O4doub1.22Å1.35Å
O1AH1sing0.97Å0.95Å
O1BH2sing0.97Å0.95Å
C1QH3sing1.09Å1.10Å
C2QH4sing1.09Å1.10Å
O2QH5sing0.97Å0.95Å
C3QH6sing1.09Å1.10Å
C2MH8sing1.09Å1.10Å
C2MH9sing1.09Å1.10Å
C2MH10sing1.09Å1.10Å
C1MH11sing1.09Å1.10Å
C1MH12sing1.09Å1.10Å
C1MH13sing1.09Å1.10Å
C4QH14sing1.09Å1.10Å
O4QH15sing0.97Å0.95Å
C5QH16sing1.09Å1.10Å
C6QH17sing1.09Å1.10Å
C6QH18sing1.09Å1.10Å
C6QH19sing1.09Å1.10Å
C5'H20sing1.09Å1.10Å
C5'H21sing1.09Å1.10Å
C4'H22sing1.09Å1.10Å
C3'H23sing1.09Å1.10Å
O3'H24sing0.97Å0.95Å
C2'H25sing1.09Å1.10Å
C2'H26sing1.09Å1.10Å
C1'H27sing1.09Å1.10Å
C6H28sing1.08Å1.08Å
C5MH29sing1.09Å1.10Å
C5MH30sing1.09Å1.10Å
C5MH31sing1.09Å1.10Å
N3H32sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2MN3QC1M111.6°111.0°
C2MN3QC3Q112.1°111.0°
N3QC2MH8109.5°109.4°
N3QC2MH9109.5°109.4°
N3QC2MH10109.5°109.5°
O4QC4QC3Q110.5°109.5°
O4QC4QC5Q114.7°109.5°
O4QC4QH14109.0°109.6°
C4QO4QH15109.5°114.0°
C1MN3QC3Q108.9°111.0°
N3QC1MH11109.5°109.4°
N3QC1MH12109.5°109.5°
N3QC1MH13109.5°109.5°
N3QC3QC4Q116.6°109.6°
N3QC3QC2Q111.9°109.6°
N3QC3QH6106.1°109.6°
C3QC4QC5Q107.5°109.1°
C4QC3QC2Q110.4°109.0°
C4QC3QH6105.4°109.5°
C3QC4QH14107.4°109.6°
C4QC5QC6Q108.5°109.5°
C4QC5QO5Q115.0°109.4°
C5QC4QH14107.4°109.5°
C4QC5QH16110.5°109.5°
C3QC2QO2Q108.0°109.5°
C3QC2QC1Q113.1°109.2°
C3QC2QH4108.1°109.6°
C2QC3QH6105.5°109.5°
C6QC5QO5Q98.7°109.5°
C6QC5QH16110.4°109.5°
C5QC6QH17109.5°109.4°
C5QC6QH18109.5°109.5°
C5QC6QH19109.5°109.4°
C5QO5QC1Q107.1°114.1°
O5QC5QH16113.0°109.5°
O2QC2QC1Q110.3°109.5°
O2QC2QH4109.1°109.5°
C2QO2QH5109.5°114.0°
C2QC1QO5Q108.4°109.4°
C2QC1QO3B112.9°109.5°
C2QC1QH3110.1°109.4°
C1QC2QH4108.2°109.5°
O5QC1QO3B102.3°109.5°
O5QC1QH3110.8°109.5°
C1QO3BPB115.8°123.0°
O3BC1QH3112.1°109.5°
O3BPBO2B104.1°109.5°
O3BPBO1B109.1°109.5°
O3BPBO3A99.5°109.4°
O2BPBO1B122.9°109.5°
O2BPBO3A109.8°109.4°
O1BPBO3A108.9°109.5°
PBO1BH2109.5°114.0°
PBO3APA136.8°134.0°
O3APAO2A115.8°109.5°
O3APAO1A100.5°109.5°
O3APAO5'101.7°109.5°
O2APAO1A118.0°109.5°
O2APAO5'111.6°109.5°
O1APAO5'107.5°109.4°
PAO1AH1109.5°114.0°
PAO5'C5'126.3°123.0°
O5'C5'C4'110.4°109.5°
O5'C5'H20109.2°109.5°
O5'C5'H21109.2°109.5°
O3'C3'C4'110.0°110.5°
O3'C3'C2'111.3°110.5°
O3'C3'H23110.3°110.6°
C3'O3'H24109.5°114.0°
C5'C4'C3'111.6°110.4°
C5'C4'O4'106.7°110.4°
C4'C5'H20109.3°109.5°
C4'C5'H21109.3°109.5°
C5'C4'H22111.1°110.3°
C3'C4'O4'103.9°104.8°
C4'C3'C2'106.3°104.1°
C3'C4'H22111.0°110.4°
C4'C3'H23109.3°110.5°
C4'O4'C1'110.8°105.3°
O4'C4'H22112.3°110.4°
C3'C2'C1'99.7°104.1°
C2'C3'H23109.4°110.5°
C3'C2'H25111.8°110.5°
C3'C2'H26111.9°110.5°
O4'C1'C2'107.5°104.8°
O4'C1'N1107.3°110.4°
O4'C1'H27108.8°110.5°
C2'C1'N1117.4°110.4°
C1'C2'H25111.9°110.5°
C1'C2'H26111.9°110.6°
C2'C1'H27107.6°110.4°
C1'N1C6118.7°119.7°
C1'N1C2116.5°119.7°
N1C1'H27108.0°110.3°
C6N1C2124.7°120.6°
N1C6C5114.1°119.7°
N1C6H28122.9°120.2°
N1C2O2123.9°119.5°
N1C2N3124.0°120.9°
O2C2N3112.0°119.5°
C6C5C5M117.9°120.5°
C6C5C4120.0°119.2°
C5C6H28123.0°120.2°
C2N3C4112.4°120.3°
C2N3H32123.8°119.9°
C5MC5C4122.1°120.4°
C5C5MH29109.5°109.5°
C5C5MH30109.5°109.5°
C5C5MH31109.5°109.5°
C5C4N3124.5°119.3°
C5C4O4124.3°120.4°
N3C4O4111.1°120.3°
C4N3H32123.8°119.8°
H8C2MH9109.5°109.5°
H8C2MH10109.4°109.5°
H9C2MH10109.5°109.5°
H11C1MH12109.4°109.5°
H11C1MH13109.5°109.5°
H12C1MH13109.5°109.5°
H17C6QH18109.5°109.5°
H17C6QH19109.5°109.5°
H18C6QH19109.4°109.5°
H20C5'H21109.5°109.5°
H25C2'H26109.5°110.5°
H29C5MH30109.4°109.5°
H29C5MH31109.5°109.5°
H30C5MH31109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2MN3QC1MC3Q124.3°124.0°
C2MN3QC3QC4Q69.9°47.3°
C2MN3QC3QC2Q161.7°72.3°
C2MN3QC3QH647.1°167.5°
N3QC2MH8H9120.0°119.9°
N3QC2MH8H10120.0°120.0°
N3QC2MH9H10120.0°120.0°
C2MN3QC1MH11180.0°180.0°
C2MN3QC1MH1260.0°60.0°
C2MN3QC1MH1360.0°60.0°
O4QC4QC3QN3Q58.7°63.2°
O4QC4QC3QC5Q125.9°119.9°
O4QC4QC3QH14118.8°120.2°
O4QC4QC5QH14121.3°120.2°
O4QC4QC3QC2Q172.1°176.9°
O4QC4QC5QC6Q68.2°62.5°
O4QC4QC5QO5Q177.6°177.5°
O4QC4QC3QH658.7°57.0°
O4QC4QC5QH1653.0°57.5°
C1MN3QC3QC4Q54.1°76.6°
C1MN3QC3QC2Q74.3°163.8°
C1MN3QC3QH6171.2°43.6°
C1MN3QC2MH8180.0°57.6°
C1MN3QC2MH960.0°62.3°
C1MN3QC2MH1060.0°177.7°
N3QC1MH11H12120.0°120.0°
N3QC1MH11H13120.0°120.0°
N3QC1MH12H13120.0°120.0°
N3QC3QC4QC2Q129.2°119.9°
N3QC3QC4QH6117.4°120.2°
N3QC3QC4QC5Q175.4°176.9°
N3QC3QC2QH6114.9°120.2°
N3QC3QC2QO2Q56.2°63.2°
N3QC3QC2QC1Q178.6°176.9°
N3QC3QC2QH461.6°57.0°
C3QN3QC2MH857.5°66.4°
C3QN3QC2MH9177.5°173.7°
C3QN3QC2MH1062.5°53.7°
C3QN3QC1MH1155.7°56.1°
C3QN3QC1MH1264.3°176.1°
C3QN3QC1MH13175.7°63.9°
N3QC3QC4QH1460.1°57.0°
C3QC4QC5QH14115.3°119.9°
C4QC3QC2QH6113.4°119.9°
C3QC4QC5QC6Q168.4°177.6°
C3QC4QC5QO5Q59.1°57.6°
C4QC3QC2QO2Q172.1°176.9°
C4QC3QC2QC1Q49.7°57.0°
C4QC3QC2QH470.0°62.9°
C3QC4QO4QH15180.0°180.0°
C3QC4QC5QH1670.3°62.4°
C5QC4QC3QC2Q46.2°57.0°
C4QC5QC6QO5Q120.1°120.0°
C4QC5QC6QH16121.3°120.1°
C4QC5QO5QH16128.2°120.0°
C4QC5QO5QC1Q68.2°61.2°
C5QC4QC3QH667.2°62.9°
C5QC4QO4QH1558.3°60.4°
C4QC5QC6QH17180.0°60.0°
C4QC5QC6QH1860.0°180.0°
C4QC5QC6QH1960.0°60.0°
C3QC2QO2QC1Q124.1°119.7°
C3QC2QO2QH4117.3°120.2°
C3QC2QC1QH4119.7°120.0°
C3QC2QC1QO5Q57.5°57.6°
C3QC2QC1QO3B55.1°62.4°
C3QC2QC1QH3178.9°177.6°
C3QC2QO2QH5180.0°179.7°
C2QC3QC4QH1469.1°62.9°
C6QC5QO5QH16116.6°120.0°
C6QC5QO5QC1Q176.6°178.8°
C6QC5QC4QH1453.1°57.7°
C5QC6QH17H18120.0°120.0°
C5QC6QH17H19120.0°120.0°
C5QC6QH18H19120.0°119.9°
C5QO5QC1QC2Q64.2°61.2°
C5QO5QC1QO3B55.3°58.8°
C5QO5QC1QH3174.9°178.9°
O5QC5QC4QH1456.3°62.3°
O5QC5QC6QH1759.9°60.0°
O5QC5QC6QH18179.9°60.0°
O5QC5QC6QH1960.1°180.0°
O2QC2QC1QH4119.2°120.1°
O2QC2QC1QO5Q178.6°177.5°
O2QC2QC1QO3B66.0°57.5°
O2QC2QC1QH360.0°62.5°
O2QC2QC3QH658.7°57.0°
C2QC1QO5QO3B119.5°120.0°
C2QC1QO5QH3120.9°120.0°
C2QC1QO3BH3125.0°120.0°
C2QC1QO3BPB99.3°150.0°
C1QC2QO2QH555.9°60.0°
C1QC2QC3QH663.6°62.9°
O5QC1QO3BH3118.7°120.1°
O5QC1QO3BPB144.4°90.0°
O5QC1QC2QH462.2°62.3°
C1QO5QC5QH1660.0°58.9°
C1QO3BPBO2B179.2°55.1°
C1QO3BPBO1B46.5°65.0°
C1QO3BPBO3A67.4°175.0°
O3BC1QC2QH4174.8°177.6°
O3BPBO2BO1B124.3°120.1°
O3BPBO2BO3A105.8°119.9°
O3BPBO1BO3A107.7°120.0°
O3BPBO3APA122.0°160.0°
O3BPBO1BH2122.0°60.0°
PBO3BC1QH325.6°30.1°
O2BPBO1BO3A130.4°120.0°
O2BPBO3APA13.2°40.0°
O2BPBO1BH20.0°180.0°
O1BPBO3APA123.9°80.0°
PBO3APAO2A81.6°45.0°
PBO3APAO1A46.8°75.0°
PBO3APAO5'157.3°165.0°
O3APBO1BH2130.4°60.0°
O3APAO2AO1A119.1°120.0°
O3APAO2AO5'115.7°120.0°
O3APAO1AO5'105.9°120.0°
O3APAO5'C5'56.6°175.0°
O3APAO1AH1126.9°60.0°
O2APAO1AO5'127.1°120.0°
O2APAO5'C5'179.3°54.9°
O2APAO1AH10.0°180.0°
O1APAO5'C5'48.5°65.0°
PAO5'C5'C4'118.2°180.0°
O5'PAO1AH1127.2°60.0°
PAO5'C5'H201.9°60.0°
PAO5'C5'H21121.6°60.0°
O5'C5'C4'H20120.1°120.0°
O5'C5'C4'H21120.1°120.0°
O5'C5'C4'C3'66.6°175.0°
O5'C5'C4'O4'179.5°69.6°
O5'C5'H20H21119.6°120.0°
O5'C5'C4'H2257.8°52.7°
O3'C3'C4'C5'147.4°98.6°
O3'C3'C4'C2'120.7°118.6°
O3'C3'C4'H23121.3°122.7°
O3'C3'C4'O4'98.1°142.6°
O3'C3'C2'H23122.2°122.7°
O3'C3'C2'C1'87.0°118.6°
O3'C3'C4'H2222.8°23.7°
O3'C3'C2'H25154.6°122.8°
O3'C3'C2'H2631.3°0.2°
C5'C4'C3'O4'114.6°118.8°
C5'C4'C3'H22124.5°122.3°
C5'C4'O4'H22122.0°122.3°
C5'C4'C3'C2'92.0°142.8°
C5'C4'O4'C1'116.2°159.4°
C4'C5'H20H21119.6°120.0°
C5'C4'C3'H2326.1°24.1°
C3'C4'O4'H22120.0°118.9°
C4'C3'C2'H23118.0°118.7°
C3'C4'O4'C1'1.9°40.5°
C4'C3'C2'C1'32.7°0.0°
C3'C4'C5'H20173.2°65.0°
C3'C4'C5'H2153.5°55.0°
C4'C3'O3'H24180.0°180.0°
C4'C3'C2'H2585.6°118.6°
C4'C3'C2'H26151.1°118.8°
O4'C4'C3'C2'22.6°24.0°
C4'O4'C1'C2'19.7°40.5°
C4'O4'C1'N1146.8°159.3°
O4'C4'C5'H2060.4°50.4°
O4'C4'C5'H2159.4°170.4°
O4'C4'C3'H23140.6°94.7°
C4'O4'C1'H2796.6°78.4°
C3'C2'C1'O4'32.0°24.0°
C3'C2'C1'H25118.4°118.6°
C3'C2'C1'H26118.4°118.7°
C3'C2'C1'N1153.0°142.8°
C2'C3'C4'H22143.5°94.9°
C2'C3'O3'H2462.4°65.4°
C3'C2'H25H26124.6°122.6°
C3'C2'C1'H2785.1°95.0°
O4'C1'C2'N1121.0°118.8°
O4'C1'C2'H27117.1°119.0°
O4'C1'N1H27117.2°122.4°
O4'C1'N1C635.9°129.6°
O4'C1'N1C2141.6°50.1°
C1'O4'C4'H22121.9°78.4°
O4'C1'C2'H2586.4°94.6°
O4'C1'C2'H26150.3°142.7°
C2'C1'N1H27121.7°122.2°
C2'C1'N1C685.2°115.0°
C2'C1'N1C297.3°65.3°
C1'C2'C3'H23150.7°118.7°
C1'C2'H25H26124.6°122.8°
C1'N1C6C2177.3°179.7°
C1'N1C2O21.9°0.0°
C1'N1C6C5180.0°180.0°
C1'N1C2N3179.6°179.7°
N1C1'C2'H2534.6°24.2°
N1C1'C2'H2688.7°98.5°
C1'N1C6H280.0°0.1°
C6N1C2O2179.2°179.8°
N1C6C5H28180.0°179.9°
C6N1C2N33.1°0.5°
N1C6C5C5M177.1°180.0°
N1C6C5C43.7°0.0°
C6N1C1'H27153.0°7.2°
N1C2O2N3177.9°179.7°
C2N1C6C52.7°0.3°
N1C2N3C43.8°0.5°
C2N1C1'H2724.5°172.5°
C2N1C6H28177.3°179.8°
N1C2N3H32176.2°179.7°
O2C2N3C4178.2°179.8°
O2C2N3H321.8°0.0°
C6C5C5MC4179.2°179.9°
C6C5C4N35.3°0.0°
C6C5C4O4178.1°180.0°
C6C5C5MH29180.0°90.0°
C6C5C5MH3060.0°150.0°
C6C5C5MH3160.0°30.0°
C2N3C4C55.0°0.2°
C2N3C4H32180.0°179.8°
C2N3C4O4178.0°179.7°
C5MC5C4N3175.5°180.0°
C5MC5C4O41.1°0.0°
C5MC5C6H282.9°0.1°
C5C5MH29H30120.0°120.0°
C5C5MH29H31120.0°120.0°
C5C5MH30H31120.0°120.0°
C5C4N3O4177.0°180.0°
C4C5C6H28176.3°179.9°
C4C5C5MH290.8°90.0°
C4C5C5MH30119.1°30.0°
C4C5C5MH31120.9°150.0°
C5C4N3H32175.0°180.0°
O4C4N3H322.0°0.1°
H3C1QC2QH459.2°57.7°
H4C2QO2QH562.8°60.1°
H4C2QC3QH6176.6°177.2°
H6C3QC4QH14177.5°177.3°
H8C2MH9H10120.0°120.1°
H11C1MH12H13120.0°120.0°
H14C4QO4QH1562.1°59.7°
H14C4QC5QH16174.3°177.7°
H16C5QC6QH1758.7°179.9°
H16C5QC6QH1861.3°60.0°
H16C5QC6QH19178.7°60.0°
H17C6QH18H19120.0°120.1°
H20C5'C4'H2262.3°172.7°
H21C5'C4'H22177.9°67.3°
H22C4'C3'H2398.5°146.4°
H23C3'O3'H2459.3°57.3°
H23C3'C2'H2532.3°0.0°
H23C3'C2'H2690.9°122.5°
H25C2'C1'H27156.5°146.4°
H26C2'C1'H2733.3°23.7°
H29C5MH30H31120.0°120.0°

222415

PDB entries from 2024-07-10

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