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Summary Geometry Related PDB entries

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Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	sing	1.43Å	1.49Å
C1	C2	sing	1.51Å	1.53Å
C2	O2	doub	1.21Å	1.24Å
C2	C3	sing	1.51Å	1.58Å
C3	O3	sing	1.43Å	1.45Å
C3	C4	sing	1.53Å	1.58Å
C4	O4	sing	1.43Å	1.46Å
C4	C5	sing	1.53Å	1.51Å
C5	O5	sing	1.43Å	1.45Å
C1	H11	sing	1.09Å	1.10Å
C1	H12	sing	1.09Å	1.10Å
O1	HO1	sing	0.97Å	0.95Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C5	H51	sing	1.09Å	1.10Å
C5	H52	sing	1.09Å	1.10Å
O5	HO5	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	109.4°	109.4°
O1	C1	H11	109.5°	109.5°
O1	C1	H12	109.5°	109.5°
C1	O1	HO1	109.5°	114.0°
C1	C2	O2	117.6°	120.0°
C1	C2	C3	121.7°	120.0°
C2	C1	H11	109.5°	109.4°
C2	C1	H12	109.5°	109.5°
O2	C2	C3	120.5°	120.0°
C2	C3	O3	109.5°	109.5°
C2	C3	C4	113.1°	109.5°
C2	C3	H3	106.5°	109.5°
O3	C3	C4	108.2°	109.5°
O3	C3	H3	111.6°	109.4°
C3	O3	HO3	109.5°	114.0°
C3	C4	O4	110.1°	109.5°
C3	C4	C5	112.3°	109.5°
C4	C3	H3	107.9°	109.5°
C3	C4	H4	106.0°	109.5°
O4	C4	C5	105.8°	109.4°
O4	C4	H4	112.4°	109.5°
C4	O4	HO4	109.5°	114.0°
C4	C5	O5	106.8°	109.5°
C5	C4	H4	110.3°	109.4°
C4	C5	H51	110.4°	109.5°
C4	C5	H52	110.4°	109.5°
O5	C5	H51	110.3°	109.5°
O5	C5	H52	110.4°	109.5°
C5	O5	HO5	109.5°	113.9°
H11	C1	H12	109.5°	109.5°
H51	C5	H52	108.6°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	H11	120.0°	120.0°
O1	C1	C2	H12	120.0°	120.0°
O1	C1	C2	O2	34.1°	0.0°
O1	C1	C2	C3	141.3°	180.0°
O1	C1	H11	H12	120.0°	120.1°
C1	C2	O2	C3	175.5°	179.9°
C1	C2	C3	O3	158.4°	165.0°
C1	C2	C3	C4	37.6°	75.0°
C2	C1	H11	H12	120.0°	120.0°
C2	C1	O1	HO1	15.1°	180.0°
C1	C2	C3	H3	80.8°	45.1°
O2	C2	C3	O3	26.3°	15.0°
O2	C2	C3	C4	147.1°	104.9°
O2	C2	C1	H11	85.9°	120.0°
O2	C2	C1	H12	154.1°	120.0°
O2	C2	C3	H3	94.5°	135.0°
C2	C3	O3	C4	123.7°	120.0°
C2	C3	O3	H3	117.7°	120.0°
C2	C3	C4	H3	117.6°	120.1°
C2	C3	C4	O4	177.3°	60.0°
C2	C3	C4	C5	65.1°	180.0°
C3	C2	C1	H11	98.7°	60.0°
C3	C2	C1	H12	21.3°	60.0°
C2	C3	O3	HO3	11.2°	60.0°
C2	C3	C4	H4	55.4°	60.0°
O3	C3	C4	H3	120.9°	119.9°
O3	C3	C4	O4	61.2°	180.0°
O3	C3	C4	C5	56.4°	60.0°
O3	C3	C4	H4	176.9°	60.0°
C3	C4	O4	C5	121.5°	120.0°
C3	C4	O4	H4	118.0°	120.1°
C3	C4	C5	H4	118.0°	120.0°
C3	C4	C5	O5	177.9°	175.0°
C4	C3	O3	HO3	134.9°	60.0°
C3	C4	O4	HO4	180.0°	59.9°
C3	C4	C5	H51	62.1°	65.0°
C3	C4	C5	H52	57.9°	55.0°
O4	C4	C5	H4	121.8°	120.0°
O4	C4	C5	O5	61.9°	65.0°
O4	C4	C3	H3	59.7°	60.0°
O4	C4	C5	H51	58.1°	55.0°
O4	C4	C5	H52	178.0°	175.0°
C4	C5	O5	H51	120.0°	120.0°
C4	C5	O5	H52	120.0°	120.0°
C5	C4	C3	H3	177.3°	59.9°
C5	C4	O4	HO4	58.4°	60.0°
C4	C5	H51	H52	121.1°	120.0°
C4	C5	O5	HO5	180.0°	180.0°
O5	C5	C4	H4	59.9°	55.0°
O5	C5	H51	H52	121.1°	120.0°
H11	C1	O1	HO1	104.9°	60.1°
H12	C1	O1	HO1	135.1°	60.0°
H3	C3	O3	HO3	106.5°	180.0°
H3	C3	C4	H4	62.1°	179.9°
H4	C4	O4	HO4	62.0°	180.0°
H4	C4	C5	H51	179.9°	175.0°
H4	C4	C5	H52	60.1°	65.0°
H51	C5	O5	HO5	60.0°	59.9°
H52	C5	O5	HO5	60.0°	60.0°

221716

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