Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

QBV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C1doub1.22Å1.25Å
BRC3'sing1.89Å1.94Å
C2'C3'doub1.38Å1.39ÅAromatic
C2'C1'sing1.40Å1.37ÅAromatic
C1C2sing1.42Å1.43Å
C3C2doub1.35Å1.34Å
C3C1'sing1.47Å1.46Å
C3'C4'sing1.39Å1.37ÅAromatic
C1'C6'doub1.40Å1.37ÅAromatic
C4'O4'sing1.36Å1.32Å
C4'C5'doub1.39Å1.37ÅAromatic
C6'C5'sing1.38Å1.38ÅAromatic
C1O2sing1.35Å1.80Å
C2H2sing1.08Å1.08Å
C3H3sing1.08Å1.08Å
C2'H2'sing1.08Å1.08Å
C5'H1sing1.08Å1.08Å
C6'H6'sing1.08Å1.08Å
O4'H4sing0.97Å0.95Å
O2H5sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1C2125.1°120.0°
O1C1O2122.0°120.0°
BRC3'C2'118.5°119.9°
BRC3'C4'118.3°120.0°
C3'C2'C1'119.9°119.9°
C2'C3'C4'123.1°120.1°
C3'C2'H2'120.1°120.1°
C2'C1'C3119.6°120.1°
C2'C1'C6'117.8°119.8°
C1'C2'H2'120.1°120.1°
C1C2C3120.5°120.0°
C2C1O2112.6°120.0°
C1C2H2119.7°119.9°
C2C3C1'126.2°120.0°
C3C2H2119.7°120.1°
C2C3H3116.9°120.0°
C3C1'C6'121.6°120.1°
C1'C3H3116.9°120.0°
C3'C4'O4'122.9°119.9°
C3'C4'C5'115.3°120.2°
C1'C6'C5'120.9°119.9°
C1'C6'H6'119.5°120.1°
O4'C4'C5'121.8°119.9°
C4'O4'H4109.5°114.0°
C4'C5'C6'122.7°120.1°
C4'C5'H1118.6°119.9°
C6'C5'H1118.7°120.0°
C5'C6'H6'119.5°120.0°
C1O2H5109.5°113.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1C2O2173.8°179.8°
O1C1C2C38.7°0.2°
O1C1C2H2171.3°179.8°
O1C1O2H50.0°0.3°
BRC3'C2'C4'174.9°179.9°
BRC3'C2'C1'174.9°180.0°
BRC3'C4'O4'5.9°0.0°
BRC3'C4'C5'172.4°180.0°
BRC3'C2'H2'5.1°0.0°
C3'C2'C1'H2'180.0°180.0°
C3'C2'C1'C3173.9°180.0°
C3'C2'C1'C6'4.8°0.2°
C2'C3'C4'O4'179.2°179.9°
C2'C3'C4'C5'2.4°0.1°
C2'C1'C3C2167.2°0.2°
C2'C1'C3C6'168.7°179.8°
C1'C2'C3'C4'0.1°0.1°
C2'C1'C6'C5'7.0°0.5°
C2'C1'C3H312.8°179.8°
C2'C1'C6'H6'173.0°179.7°
C1C2C3H2180.0°180.0°
C1C2C3C1'168.0°180.0°
C1C2C3H312.0°0.0°
C2C1O2H5174.0°180.0°
C2C3C1'H3180.0°180.0°
C2C3C1'C6'1.5°180.0°
C3C2C1O2177.6°180.0°
C3C1'C6'C5'175.9°179.7°
C1'C3C2H212.0°0.0°
C3C1'C2'H2'6.1°0.0°
C3C1'C6'H6'4.1°0.1°
C3'C4'O4'C5'178.2°180.0°
C3'C4'C5'C6'0.2°0.2°
C4'C3'C2'H2'180.0°179.9°
C3'C4'C5'H1179.8°180.0°
C3'C4'O4'H4180.0°90.0°
C1'C6'C5'C4'4.6°0.5°
C1'C6'C5'H6'180.0°179.8°
C6'C1'C3H3178.5°0.0°
C6'C1'C2'H2'175.2°179.8°
C1'C6'C5'H1175.4°179.7°
O4'C4'C5'C6'178.6°179.8°
O4'C4'C5'H11.4°0.0°
C4'C5'C6'H1180.0°179.8°
C4'C5'C6'H6'175.4°179.7°
C5'C4'O4'H41.8°90.0°
O2C1C2H22.4°0.0°
H2C2C3H3168.0°180.0°
H1C5'C6'H6'4.6°0.1°

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon