QBT
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | sing | 1.61Å | 1.52Å | |
| P | O2P | doub | 1.48Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| P | O3P | sing | 1.61Å | 1.59Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C2' | C1' | sing | 1.54Å | 1.56Å | |
| C1' | N1 | sing | 1.47Å | 1.46Å | |
| N1 | C2 | sing | 1.34Å | 1.35Å | |
| N1 | C6 | sing | 1.46Å | 1.42Å | |
| C2 | O2 | doub | 1.22Å | 1.21Å | |
| C2 | N3 | sing | 1.34Å | 1.32Å | |
| N3 | C4 | sing | 1.35Å | 1.32Å | |
| C4 | O4 | doub | 1.21Å | 1.21Å | |
| C4 | C5 | sing | 1.51Å | 1.49Å | |
| C5 | C5M | sing | 1.53Å | 1.53Å | |
| O1P | H1P | sing | 0.97Å | 0.95Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O3' | HA | sing | 0.97Å | 0.95Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C6 | H61C | sing | 1.09Å | 1.10Å | |
| C6 | H62C | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C5 | C6 | sing | 1.53Å | 1.48Å | |
| C5 | H5M | sing | 1.09Å | 1.10Å | |
| C5M | H52 | sing | 1.09Å | 1.10Å | |
| C5M | H53 | sing | 1.09Å | 1.10Å | |
| C5M | H54 | sing | 1.09Å | 1.10Å | |
| O3P | H3P | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 120.0° | 109.5° |
| O1P | P | O5' | 111.1° | 109.5° |
| O1P | P | O3P | 104.6° | 109.5° |
| P | O1P | H1P | 109.5° | 114.0° |
| O2P | P | O5' | 108.3° | 109.5° |
| O2P | P | O3P | 107.7° | 109.5° |
| O5' | P | O3P | 103.9° | 109.5° |
| P | O5' | C5' | 115.8° | 123.0° |
| P | O3P | H3P | 109.5° | 114.1° |
| O5' | C5' | C4' | 110.4° | 109.5° |
| O5' | C5' | H5'1 | 109.2° | 109.5° |
| O5' | C5' | H5'2 | 109.0° | 109.5° |
| C5' | C4' | O4' | 111.4° | 110.6° |
| C5' | C4' | C3' | 110.2° | 110.6° |
| C4' | C5' | H5'1 | 109.1° | 109.5° |
| C4' | C5' | H5'2 | 108.9° | 109.5° |
| C5' | C4' | H4' | 107.1° | 110.5° |
| O4' | C4' | C3' | 107.7° | 103.5° |
| C4' | O4' | C1' | 109.3° | 106.9° |
| O4' | C4' | H4' | 109.6° | 110.6° |
| C4' | C3' | O3' | 108.5° | 111.0° |
| C4' | C3' | C2' | 104.3° | 102.1° |
| C3' | C4' | H4' | 110.8° | 110.8° |
| C4' | C3' | H3' | 113.6° | 110.9° |
| O4' | C1' | C2' | 104.7° | 107.3° |
| O4' | C1' | N1 | 107.6° | 109.9° |
| O4' | C1' | H1' | 116.7° | 109.9° |
| O3' | C3' | C2' | 110.1° | 110.9° |
| O3' | C3' | H3' | 108.2° | 110.8° |
| C3' | O3' | HA | 109.5° | 114.1° |
| C3' | C2' | C1' | 101.7° | 104.2° |
| C2' | C3' | H3' | 112.1° | 110.9° |
| C3' | C2' | H2'1 | 112.2° | 110.5° |
| C3' | C2' | H2'2 | 113.8° | 110.5° |
| C2' | C1' | N1 | 116.9° | 109.9° |
| C2' | C1' | H1' | 107.2° | 109.9° |
| C1' | C2' | H2'1 | 112.1° | 110.5° |
| C1' | C2' | H2'2 | 113.8° | 110.5° |
| C1' | N1 | C2 | 122.5° | 119.5° |
| C1' | N1 | C6 | 111.5° | 119.6° |
| N1 | C1' | H1' | 104.3° | 110.0° |
| C2 | N1 | C6 | 125.6° | 120.9° |
| N1 | C2 | O2 | 122.3° | 119.2° |
| N1 | C2 | N3 | 120.3° | 121.6° |
| N1 | C6 | H61C | 109.3° | 109.4° |
| N1 | C6 | H62C | 109.2° | 109.4° |
| N1 | C6 | C5 | 110.0° | 109.3° |
| O2 | C2 | N3 | 117.3° | 119.2° |
| C2 | N3 | C4 | 121.7° | 121.0° |
| C2 | N3 | H3 | 119.1° | 119.5° |
| N3 | C4 | O4 | 119.8° | 120.0° |
| N3 | C4 | C5 | 118.5° | 120.0° |
| C4 | N3 | H3 | 119.2° | 119.6° |
| O4 | C4 | C5 | 118.6° | 120.0° |
| C4 | C5 | C5M | 111.4° | 109.5° |
| C4 | C5 | C6 | 115.6° | 109.1° |
| C4 | C5 | H5M | 105.0° | 109.5° |
| C5M | C5 | C6 | 113.1° | 109.4° |
| C5M | C5 | H5M | 108.0° | 109.5° |
| C5 | C5M | H52 | 109.5° | 109.5° |
| C5 | C5M | H53 | 109.5° | 109.5° |
| C5 | C5M | H54 | 109.5° | 109.5° |
| H5'1 | C5' | H5'2 | 110.2° | 109.5° |
| H2'1 | C2' | H2'2 | 103.7° | 110.5° |
| H61C | C6 | H62C | 109.9° | 109.5° |
| H61C | C6 | C5 | 109.3° | 109.7° |
| H62C | C6 | C5 | 109.2° | 109.5° |
| C6 | C5 | H5M | 102.9° | 109.7° |
| H52 | C5M | H53 | 109.4° | 109.4° |
| H52 | C5M | H54 | 109.5° | 109.5° |
| H53 | C5M | H54 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O5' | 128.9° | 120.0° |
| O1P | P | O2P | O3P | 119.3° | 120.0° |
| O1P | P | O5' | O3P | 111.9° | 120.0° |
| O1P | P | O5' | C5' | 27.6° | 65.0° |
| O1P | P | O3P | H3P | 50.8° | 60.0° |
| O2P | P | O5' | O3P | 114.3° | 120.0° |
| O2P | P | O5' | C5' | 161.4° | 55.0° |
| O2P | P | O1P | H1P | 2.1° | 180.0° |
| O2P | P | O3P | H3P | 77.9° | 60.0° |
| P | O5' | C5' | C4' | 167.5° | 180.0° |
| O5' | P | O1P | H1P | 129.8° | 60.0° |
| P | O5' | C5' | H5'1 | 47.6° | 60.0° |
| P | O5' | C5' | H5'2 | 72.8° | 60.0° |
| O5' | P | O3P | H3P | 167.3° | 180.0° |
| O3P | P | O5' | C5' | 84.3° | 175.0° |
| O3P | P | O1P | H1P | 118.7° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 119.6° | 120.0° |
| O5' | C5' | C4' | O4' | 54.2° | 66.4° |
| O5' | C5' | C4' | C3' | 65.3° | 179.4° |
| O5' | C5' | H5'1 | H5'2 | 119.6° | 120.0° |
| O5' | C5' | C4' | H4' | 174.0° | 56.4° |
| C5' | C4' | O4' | C3' | 121.0° | 118.5° |
| C5' | C4' | O4' | H4' | 118.4° | 122.8° |
| C5' | C4' | C3' | H4' | 118.4° | 122.9° |
| C5' | C4' | O4' | C1' | 127.6° | 158.6° |
| C5' | C4' | C3' | O3' | 137.3° | 86.3° |
| C5' | C4' | C3' | C2' | 105.4° | 155.5° |
| C4' | C5' | H5'1 | H5'2 | 119.6° | 120.0° |
| C5' | C4' | C3' | H3' | 16.9° | 37.3° |
| O4' | C4' | C3' | H4' | 119.9° | 118.6° |
| O4' | C4' | C3' | O3' | 101.0° | 155.2° |
| O4' | C4' | C3' | C2' | 16.3° | 37.0° |
| C4' | O4' | C1' | C2' | 26.1° | 26.5° |
| C4' | O4' | C1' | N1 | 151.1° | 145.9° |
| O4' | C4' | C5' | H5'1 | 174.2° | 53.6° |
| O4' | C4' | C5' | H5'2 | 65.4° | 173.6° |
| O4' | C4' | C3' | H3' | 138.6° | 81.2° |
| C4' | O4' | C1' | H1' | 92.2° | 92.9° |
| C3' | C4' | O4' | C1' | 6.6° | 40.1° |
| C4' | C3' | O3' | C2' | 113.5° | 112.7° |
| C4' | C3' | O3' | H3' | 123.7° | 123.6° |
| C4' | C3' | C2' | H3' | 123.4° | 118.1° |
| C4' | C3' | C2' | C1' | 30.4° | 20.8° |
| C3' | C4' | C5' | H5'1 | 54.6° | 60.5° |
| C3' | C4' | C5' | H5'2 | 175.0° | 59.5° |
| C4' | C3' | O3' | HA | 55.0° | 180.0° |
| C4' | C3' | C2' | H2'1 | 89.6° | 139.6° |
| C4' | C3' | C2' | H2'2 | 153.2° | 97.8° |
| O4' | C1' | C2' | C3' | 35.1° | 2.1° |
| O4' | C1' | C2' | N1 | 118.9° | 119.4° |
| O4' | C1' | C2' | H1' | 124.5° | 119.5° |
| O4' | C1' | N1 | H1' | 124.5° | 121.1° |
| O4' | C1' | N1 | C2 | 105.1° | 53.5° |
| O4' | C1' | N1 | C6 | 68.6° | 126.7° |
| C1' | O4' | C4' | H4' | 114.1° | 78.6° |
| O4' | C1' | C2' | H2'1 | 84.9° | 116.6° |
| O4' | C1' | C2' | H2'2 | 157.8° | 120.7° |
| O3' | C3' | C2' | H3' | 120.5° | 123.6° |
| O3' | C3' | C2' | C1' | 85.7° | 139.1° |
| O3' | C3' | C4' | H4' | 18.9° | 36.6° |
| O3' | C3' | C2' | H2'1 | 154.3° | 102.2° |
| O3' | C3' | C2' | H2'2 | 37.0° | 20.4° |
| C3' | C2' | C1' | H2'1 | 120.0° | 118.7° |
| C3' | C2' | C1' | H2'2 | 122.8° | 118.6° |
| C3' | C2' | C1' | N1 | 154.0° | 121.5° |
| C2' | C3' | C4' | H4' | 136.2° | 81.6° |
| C3' | C2' | C1' | H1' | 89.5° | 117.4° |
| C2' | C3' | O3' | HA | 58.5° | 67.3° |
| C3' | C2' | H2'1 | H2'2 | 123.2° | 122.6° |
| C2' | C1' | N1 | H1' | 118.2° | 121.0° |
| C2' | C1' | N1 | C2 | 137.6° | 64.3° |
| C2' | C1' | N1 | C6 | 48.7° | 115.4° |
| C1' | C2' | C3' | H3' | 153.8° | 97.3° |
| C1' | C2' | H2'1 | H2'2 | 123.1° | 122.6° |
| C1' | N1 | C2 | C6 | 172.8° | 179.7° |
| C1' | N1 | C2 | O2 | 2.3° | 5.6° |
| C1' | N1 | C2 | N3 | 178.9° | 174.3° |
| N1 | C1' | C2' | H2'1 | 34.0° | 2.8° |
| N1 | C1' | C2' | H2'2 | 83.3° | 119.8° |
| C1' | N1 | C6 | H61C | 73.0° | 95.8° |
| C1' | N1 | C6 | H62C | 47.2° | 24.2° |
| C1' | N1 | C6 | C5 | 167.0° | 144.0° |
| N1 | C2 | O2 | N3 | 178.9° | 179.9° |
| N1 | C2 | N3 | C4 | 4.6° | 12.0° |
| C2 | N1 | C1' | H1' | 19.4° | 174.7° |
| C2 | N1 | C6 | H61C | 100.5° | 83.9° |
| C2 | N1 | C6 | H62C | 139.3° | 156.1° |
| N1 | C2 | N3 | H3 | 175.4° | 168.0° |
| C2 | N1 | C6 | C5 | 19.5° | 36.3° |
| C6 | N1 | C2 | O2 | 175.1° | 174.1° |
| C6 | N1 | C2 | N3 | 6.0° | 6.0° |
| N1 | C6 | C5 | C4 | 30.4° | 47.0° |
| N1 | C6 | C5 | C5M | 160.4° | 166.8° |
| C6 | N1 | C1' | H1' | 166.8° | 5.6° |
| N1 | C6 | H61C | H62C | 119.8° | 119.9° |
| N1 | C6 | H61C | C5 | 120.4° | 119.9° |
| N1 | C6 | H62C | C5 | 120.3° | 119.8° |
| N1 | C6 | C5 | H5M | 83.4° | 73.0° |
| O2 | C2 | N3 | C4 | 176.6° | 168.0° |
| O2 | C2 | N3 | H3 | 3.5° | 12.0° |
| C2 | N3 | C4 | H3 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 177.9° | 175.5° |
| C2 | N3 | C4 | C5 | 18.0° | 4.5° |
| N3 | C4 | O4 | C5 | 159.8° | 180.0° |
| N3 | C4 | C5 | C5M | 162.8° | 154.2° |
| N3 | C4 | C5 | C6 | 32.1° | 34.4° |
| N3 | C4 | C5 | H5M | 80.6° | 85.7° |
| O4 | C4 | C5 | C5M | 37.1° | 25.8° |
| O4 | C4 | N3 | H3 | 2.1° | 4.5° |
| O4 | C4 | C5 | C6 | 167.8° | 145.6° |
| O4 | C4 | C5 | H5M | 79.5° | 94.3° |
| C4 | C5 | C5M | C6 | 132.1° | 119.5° |
| C4 | C5 | C5M | H5M | 114.7° | 120.2° |
| C4 | C5 | C6 | H61C | 89.6° | 73.0° |
| C4 | C5 | C6 | H62C | 150.2° | 166.8° |
| C5 | C4 | N3 | H3 | 161.9° | 175.5° |
| C4 | C5 | C6 | H5M | 113.8° | 120.0° |
| C4 | C5 | C5M | H52 | 175.3° | 60.0° |
| C4 | C5 | C5M | H53 | 55.4° | 180.0° |
| C4 | C5 | C5M | H54 | 64.7° | 60.0° |
| C5M | C5 | C6 | H61C | 40.4° | 46.8° |
| C5M | C5 | C6 | H62C | 79.8° | 73.3° |
| C5M | C5 | C6 | H5M | 116.2° | 120.2° |
| C5 | C5M | H52 | H53 | 120.0° | 120.0° |
| C5 | C5M | H52 | H54 | 120.0° | 120.0° |
| C5 | C5M | H53 | H54 | 120.0° | 120.0° |
| H5'1 | C5' | C4' | H4' | 66.0° | 176.4° |
| H5'2 | C5' | C4' | H4' | 54.4° | 63.6° |
| H4' | C4' | C3' | H3' | 101.5° | 160.2° |
| H3' | C3' | O3' | HA | 178.7° | 56.4° |
| H3' | C3' | C2' | H2'1 | 33.8° | 21.4° |
| H3' | C3' | C2' | H2'2 | 83.5° | 144.0° |
| H1' | C1' | C2' | H2'1 | 150.5° | 123.9° |
| H1' | C1' | C2' | H2'2 | 33.3° | 1.3° |
| H61C | C6 | H62C | C5 | 119.8° | 120.3° |
| H61C | C6 | C5 | H5M | 156.6° | 167.0° |
| H62C | C6 | C5 | H5M | 36.4° | 46.8° |
| C6 | C5 | C5M | H52 | 52.6° | 59.5° |
| C6 | C5 | C5M | H53 | 172.6° | 60.4° |
| C6 | C5 | C5M | H54 | 67.4° | 179.5° |
| H5M | C5 | C5M | H52 | 60.6° | 179.8° |
| H5M | C5 | C5M | H53 | 59.4° | 59.9° |
| H5M | C5 | C5M | H54 | 179.4° | 60.2° |
| H52 | C5M | H53 | H54 | 120.0° | 120.0° |
