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Summary Geometry Related PDB entries

Q7L

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	O	sing	1.44Å	0.00Å
O	C1	sing	1.37Å	0.00Å
C1	C2	sing	1.39Å	0.00Å	Aromatic
C2	C3	doub	1.38Å	0.00Å	Aromatic
C3	C4	sing	1.39Å	0.00Å	Aromatic
C5	C4	doub	1.39Å	0.00Å	Aromatic
C6	C5	sing	1.38Å	0.00Å	Aromatic
C1	C6	doub	1.39Å	0.00Å	Aromatic
O1	C6	sing	1.37Å	0.00Å
C	O1	sing	1.44Å	0.00Å
C4	C7	sing	1.48Å	0.00Å
C7	C8	sing	1.41Å	0.00Å	Aromatic
C8	C9	doub	1.35Å	0.00Å	Aromatic
C9	N	sing	1.35Å	0.00Å	Aromatic
N1	N	sing	1.40Å	0.00Å	Aromatic
C7	N1	doub	1.32Å	0.00Å	Aromatic
C5	H4	sing	1.08Å	0.00Å
C8	H5	sing	1.08Å	0.00Å
N	H7	sing	0.97Å	0.00Å
C	H	sing	1.09Å	0.00Å
C	H1	sing	1.09Å	0.00Å
C2	H2	sing	1.08Å	0.00Å
C3	H3	sing	1.08Å	0.00Å
C9	H6	sing	1.08Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C	O	C1	90.0°	105.5°
O	C	O1	90.0°	103.7°
O	C	H	90.0°	110.5°
O	C	H1	90.0°	110.6°
O	C1	C2	90.0°	131.4°
O	C1	C6	90.0°	108.6°
C1	C2	C3	90.0°	120.2°
C2	C1	C6	90.0°	120.0°
C1	C2	H2	90.0°	119.9°
C2	C3	C4	90.0°	120.0°
C3	C2	H2	90.0°	119.9°
C2	C3	H3	90.0°	120.0°
C3	C4	C5	90.0°	119.9°
C3	C4	C7	90.0°	120.1°
C4	C3	H3	90.0°	120.0°
C4	C5	C6	90.0°	119.9°
C5	C4	C7	90.0°	120.0°
C4	C5	H4	90.0°	120.0°
C5	C6	C1	90.0°	119.9°
C5	C6	O1	90.0°	131.5°
C6	C5	H4	90.0°	120.0°
C1	C6	O1	90.0°	108.6°
C6	O1	C	90.0°	105.5°
O1	C	H	90.0°	110.5°
O1	C	H1	90.0°	110.6°
C4	C7	C8	90.0°	126.0°
C4	C7	N1	90.0°	126.0°
C7	C8	C9	90.0°	107.8°
C8	C7	N1	90.0°	107.9°
C7	C8	H5	90.0°	126.1°
C8	C9	N	90.0°	108.0°
C9	C8	H5	90.0°	126.1°
C8	C9	H6	90.0°	126.0°
C9	N	N1	90.0°	108.2°
C9	N	H7	90.0°	125.9°
N	C9	H6	90.0°	126.1°
N	N1	C7	90.0°	108.1°
N1	N	H7	90.0°	125.9°
H	C	H1	90.0°	110.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C	O	C1	C2	90.0°	162.8°
C	O	C1	C6	90.0°	17.4°
O	C	O1	C6	90.0°	27.1°
O	C	O1	H	90.0°	118.5°
O	C	O1	H1	90.0°	118.6°
O	C	H	H1	90.0°	122.8°
O	C1	C2	C6	90.0°	179.9°
O	C1	C2	C3	90.0°	179.7°
O	C1	C6	C5	90.0°	180.0°
O	C1	C6	O1	90.0°	0.1°
C1	O	C	O1	90.0°	27.2°
C1	O	C	H	90.0°	91.3°
C1	O	C	H1	90.0°	145.8°
O	C1	C2	H2	90.0°	0.1°
C1	C2	C3	H2	90.0°	179.9°
C1	C2	C3	C4	90.0°	0.4°
C2	C1	C6	C5	90.0°	0.1°
C2	C1	C6	O1	90.0°	180.0°
C1	C2	C3	H3	90.0°	180.0°
C2	C3	C4	H3	90.0°	179.6°
C2	C3	C4	C5	90.0°	0.5°
C3	C2	C1	C6	90.0°	0.1°
C2	C3	C4	C7	90.0°	179.8°
C3	C4	C5	C7	90.0°	179.7°
C3	C4	C5	C6	90.0°	0.3°
C3	C4	C7	C8	90.0°	0.3°
C3	C4	C7	N1	90.0°	179.7°
C3	C4	C5	H4	90.0°	179.8°
C4	C3	C2	H2	90.0°	179.7°
C4	C5	C6	H4	90.0°	179.9°
C4	C5	C6	C1	90.0°	0.0°
C4	C5	C6	O1	90.0°	179.9°
C5	C4	C7	C8	90.0°	180.0°
C5	C4	C7	N1	90.0°	0.0°
C5	C4	C3	H3	90.0°	180.0°
C5	C6	C1	O1	90.0°	180.0°
C5	C6	O1	C	90.0°	162.7°
C6	C5	C4	C7	90.0°	180.0°
C1	C6	O1	C	90.0°	17.2°
C1	C6	C5	H4	90.0°	179.9°
C6	C1	C2	H2	90.0°	180.0°
O1	C6	C5	H4	90.0°	0.0°
C6	O1	C	H	90.0°	91.4°
C6	O1	C	H1	90.0°	145.7°
O1	C	H	H1	90.0°	122.9°
C4	C7	C8	N1	90.0°	180.0°
C4	C7	C8	C9	90.0°	180.0°
C4	C7	N1	N	90.0°	180.0°
C7	C4	C5	H4	90.0°	0.1°
C4	C7	C8	H5	90.0°	0.0°
C7	C4	C3	H3	90.0°	0.2°
C7	C8	C9	H5	90.0°	180.0°
C7	C8	C9	N	90.0°	0.0°
C8	C7	N1	N	90.0°	0.0°
C7	C8	C9	H6	90.0°	180.0°
C8	C9	N	H6	90.0°	180.0°
C8	C9	N	N1	90.0°	0.0°
C9	C8	C7	N1	90.0°	0.0°
C8	C9	N	H7	90.0°	179.9°
C9	N	N1	H7	90.0°	179.9°
C9	N	N1	C7	90.0°	0.0°
N	C9	C8	H5	90.0°	180.0°
N1	N	C9	H6	90.0°	180.0°
N1	C7	C8	H5	90.0°	180.0°
C7	N1	N	H7	90.0°	179.9°
H5	C8	C9	H6	90.0°	0.0°
H7	N	C9	H6	90.0°	0.1°
H2	C2	C3	H3	90.0°	0.1°

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PDB entries from 2024-09-11

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