PZM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | CB | sing | 1.47Å | 1.48Å | |
| N1 | HN11 | sing | 1.01Å | 1.00Å | |
| N1 | HN12 | sing | 1.01Å | 1.00Å | |
| CB | CG | sing | 1.51Å | 1.50Å | |
| CB | HB1 | sing | 1.09Å | 1.10Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CG | CD1 | doub | 1.38Å | 1.41Å | Aromatic |
| CG | CD2 | sing | 1.38Å | 1.38Å | Aromatic |
| CD1 | CE1 | sing | 1.38Å | 1.43Å | Aromatic |
| CD1 | HD1 | sing | 1.08Å | 1.08Å | |
| CE1 | CZ | doub | 1.39Å | 1.41Å | Aromatic |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| CZ | CE2 | sing | 1.39Å | 1.37Å | Aromatic |
| CZ | O1 | sing | 1.36Å | 1.42Å | |
| CE2 | CD2 | doub | 1.38Å | 1.60Å | Aromatic |
| CE2 | HE2 | sing | 1.08Å | 1.08Å | |
| CD2 | HD2 | sing | 1.08Å | 1.08Å | |
| O1 | CF1 | sing | 1.43Å | 1.41Å | |
| CF1 | HF11 | sing | 1.09Å | 1.10Å | |
| CF1 | HF12 | sing | 1.09Å | 1.10Å | |
| CF1 | HF13 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CB | N1 | HN11 | 109.5° | 106.7° |
| CB | N1 | HN12 | 109.5° | 106.7° |
| N1 | CB | CG | 120.1° | 109.5° |
| N1 | CB | HB1 | 103.6° | 109.5° |
| N1 | CB | HB2 | 106.1° | 109.5° |
| HN11 | N1 | HN12 | 109.5° | 106.7° |
| CG | CB | HB1 | 103.6° | 109.5° |
| CG | CB | HB2 | 106.1° | 109.5° |
| CB | CG | CD1 | 121.8° | 119.9° |
| CB | CG | CD2 | 118.9° | 120.0° |
| HB1 | CB | HB2 | 118.2° | 109.4° |
| CD1 | CG | CD2 | 119.2° | 120.1° |
| CG | CD1 | CE1 | 122.5° | 120.1° |
| CG | CD1 | HD1 | 118.7° | 120.0° |
| CG | CD2 | CE2 | 118.6° | 120.1° |
| CG | CD2 | HD2 | 120.7° | 120.0° |
| CE1 | CD1 | HD1 | 118.7° | 120.0° |
| CD1 | CE1 | CZ | 121.2° | 119.9° |
| CD1 | CE1 | HE1 | 119.4° | 120.0° |
| CZ | CE1 | HE1 | 119.4° | 120.1° |
| CE1 | CZ | CE2 | 119.8° | 119.9° |
| CE1 | CZ | O1 | 123.1° | 120.0° |
| CE2 | CZ | O1 | 117.1° | 120.1° |
| CZ | CE2 | CD2 | 118.7° | 119.9° |
| CZ | CE2 | HE2 | 120.6° | 120.0° |
| CZ | O1 | CF1 | 118.3° | 106.8° |
| CD2 | CE2 | HE2 | 120.6° | 120.0° |
| CE2 | CD2 | HD2 | 120.7° | 120.0° |
| O1 | CF1 | HF11 | 109.5° | 109.5° |
| O1 | CF1 | HF12 | 109.5° | 109.5° |
| O1 | CF1 | HF13 | 109.5° | 109.4° |
| HF11 | CF1 | HF12 | 109.5° | 109.5° |
| HF11 | CF1 | HF13 | 109.5° | 109.5° |
| HF12 | CF1 | HF13 | 109.4° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CB | N1 | HN11 | HN12 | 120.0° | 113.8° |
| N1 | CB | CG | HB1 | 114.8° | 120.0° |
| N1 | CB | CG | HB2 | 120.0° | 120.0° |
| N1 | CB | HB1 | HB2 | 116.9° | 120.0° |
| N1 | CB | CG | CD1 | 117.3° | 89.9° |
| N1 | CB | CG | CD2 | 60.2° | 90.0° |
| HN11 | N1 | CB | CG | 20.6° | 180.0° |
| HN11 | N1 | CB | HB1 | 135.5° | 60.0° |
| HN11 | N1 | CB | HB2 | 99.4° | 60.0° |
| HN12 | N1 | CB | CG | 140.6° | 66.2° |
| HN12 | N1 | CB | HB1 | 104.5° | 173.8° |
| HN12 | N1 | CB | HB2 | 20.6° | 53.8° |
| CG | CB | HB1 | HB2 | 117.0° | 120.0° |
| CB | CG | CD1 | CD2 | 177.5° | 179.9° |
| CB | CG | CD1 | CE1 | 179.1° | 180.0° |
| CB | CG | CD1 | HD1 | 0.9° | 0.1° |
| CB | CG | CD2 | CE2 | 179.2° | 179.7° |
| CB | CG | CD2 | HD2 | 0.7° | 0.0° |
| HB1 | CB | CG | CD1 | 127.8° | 150.0° |
| HB1 | CB | CG | CD2 | 54.7° | 30.1° |
| HB2 | CB | CG | CD1 | 2.7° | 30.1° |
| HB2 | CB | CG | CD2 | 179.9° | 150.0° |
| CG | CD1 | CE1 | HD1 | 180.0° | 179.9° |
| CG | CD1 | CE1 | CZ | 0.6° | 0.0° |
| CG | CD1 | CE1 | HE1 | 179.3° | 180.0° |
| CD1 | CG | CD2 | CE2 | 1.7° | 0.2° |
| CD1 | CG | CD2 | HD2 | 178.3° | 179.9° |
| CD2 | CG | CD1 | CE1 | 1.6° | 0.1° |
| CD2 | CG | CD1 | HD1 | 178.4° | 180.0° |
| CG | CD2 | CE2 | CZ | 0.9° | 0.6° |
| CG | CD2 | CE2 | HD2 | 180.0° | 179.7° |
| CG | CD2 | CE2 | HE2 | 179.1° | 180.0° |
| CD1 | CE1 | CZ | HE1 | 180.0° | 180.0° |
| CD1 | CE1 | CZ | CE2 | 0.2° | 0.3° |
| CD1 | CE1 | CZ | O1 | 178.7° | 180.0° |
| HD1 | CD1 | CE1 | CZ | 179.3° | 180.0° |
| HD1 | CD1 | CE1 | HE1 | 0.7° | 0.0° |
| CE1 | CZ | CE2 | O1 | 178.6° | 179.7° |
| CE1 | CZ | CE2 | CD2 | 0.0° | 0.6° |
| CE1 | CZ | CE2 | HE2 | 180.0° | 180.0° |
| CE1 | CZ | O1 | CF1 | 34.6° | 180.0° |
| HE1 | CE1 | CZ | CE2 | 179.8° | 179.7° |
| HE1 | CE1 | CZ | O1 | 1.3° | 0.0° |
| CZ | CE2 | CD2 | HE2 | 180.0° | 179.4° |
| CZ | CE2 | CD2 | HD2 | 179.1° | 179.7° |
| CE2 | CZ | O1 | CF1 | 144.0° | 0.2° |
| O1 | CZ | CE2 | CD2 | 178.7° | 179.7° |
| O1 | CZ | CE2 | HE2 | 1.3° | 0.3° |
| CZ | O1 | CF1 | HF11 | 85.0° | 59.9° |
| CZ | O1 | CF1 | HF12 | 35.0° | 180.0° |
| CZ | O1 | CF1 | HF13 | 155.0° | 60.1° |
| HE2 | CE2 | CD2 | HD2 | 0.9° | 0.3° |
| O1 | CF1 | HF11 | HF12 | 120.0° | 120.0° |
| O1 | CF1 | HF11 | HF13 | 120.0° | 119.9° |
| O1 | CF1 | HF12 | HF13 | 120.0° | 119.9° |
| HF11 | CF1 | HF12 | HF13 | 120.0° | 120.0° |
