Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PYV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
SN1sing1.66Å1.61Å
SO1doub1.42Å1.43Å
SO2doub1.42Å1.44Å
SC4sing1.76Å1.59Å
BRC1sing1.89Å1.90Å
C1C2doub1.41Å1.49ÅAromatic
C1C6sing1.36Å1.39ÅAromatic
N1C11sing1.47Å1.45Å
C2C3sing1.42Å1.47ÅAromatic
C2C10sing1.41Å1.39ÅAromatic
N2C12doub1.32Å1.35ÅAromatic
N2C13sing1.32Å1.34ÅAromatic
C3C4doub1.41Å1.48ÅAromatic
C3C7sing1.41Å1.38ÅAromatic
C4C5sing1.36Å1.38ÅAromatic
C5C6doub1.39Å1.39ÅAromatic
C7C8doub1.36Å1.40ÅAromatic
C8C9sing1.39Å1.39ÅAromatic
C9C10doub1.36Å1.39ÅAromatic
C11C12sing1.51Å1.53Å
C12C16sing1.38Å1.38ÅAromatic
C13C14doub1.38Å1.39ÅAromatic
C14C15sing1.39Å1.38ÅAromatic
C15C16doub1.39Å1.39ÅAromatic
N1HN1sing0.97Å1.00Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C7H7sing1.08Å1.08Å
C8H8sing1.08Å1.08Å
C9H9sing1.08Å1.08Å
C10H10sing1.08Å1.08Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C13H13sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
C15H15sing1.08Å1.08Å
C16H16sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N1SO1109.4°106.4°
N1SO2110.1°106.4°
N1SC4107.4°107.2°
SN1C11122.9°120.0°
SN1HN1105.2°120.0°
O1SO2110.4°123.2°
O1SC4109.8°106.4°
O2SC4109.7°106.4°
SC4C3122.6°120.2°
SC4C5117.9°120.2°
BRC1C2121.2°120.2°
BRC1C6119.3°120.2°
C2C1C6119.5°119.7°
C1C2C3118.2°119.3°
C1C2C10122.2°121.3°
C1C6C5121.9°120.9°
C1C6H6119.1°119.5°
N1C11C12109.9°109.5°
C11N1HN1105.3°120.0°
N1C11H11109.3°109.5°
N1C11H11A109.3°109.4°
C3C2C10119.5°119.3°
C2C3C4118.0°119.3°
C2C3C7118.8°119.3°
C2C10C9119.8°119.7°
C2C10H10120.1°120.1°
C12N2C13122.5°121.8°
N2C12C11121.0°119.6°
N2C12C16118.3°120.8°
N2C13C14120.8°120.7°
N2C13H13119.6°119.6°
C4C3C7123.2°121.3°
C3C4C5119.5°119.7°
C3C7C8119.9°119.7°
C3C7H7120.0°120.1°
C4C5C6122.9°121.0°
C4C5H5118.6°119.5°
C6C5H5118.5°119.5°
C5C6H6119.0°119.6°
C7C8C9121.2°121.0°
C8C7H7120.0°120.2°
C7C8H8119.4°119.5°
C8C9C10120.7°120.9°
C9C8H8119.4°119.5°
C8C9H9119.7°119.5°
C10C9H9119.7°119.6°
C9C10H10120.1°120.1°
C11C12C16120.7°119.6°
C12C11H11109.3°109.5°
C12C11H11A109.3°109.5°
C12C16C15120.0°119.1°
C12C16H16120.0°120.4°
C13C14C15117.8°119.2°
C14C13H13119.6°119.6°
C13C14H14121.1°120.4°
C14C15C16120.6°118.5°
C15C14H14121.1°120.4°
C14C15H15119.7°120.8°
C16C15H15119.7°120.8°
C15C16H16120.0°120.4°
H11C11H11A109.6°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1SO1O2121.3°122.9°
N1SO1C4117.6°114.1°
N1SO2C4117.9°114.1°
SN1C11HN1120.0°180.0°
N1SC4C361.9°64.0°
N1SC4C5117.3°116.0°
SN1C11C12104.3°163.1°
SN1C11H1115.8°76.9°
SN1C11H11A135.7°43.1°
O1SO2C4121.1°123.0°
O1SN1C11161.1°177.1°
O1SC4C356.9°49.5°
O1SC4C5123.9°130.5°
O1SN1HN141.0°2.9°
O2SN1C1139.6°50.0°
O2SC4C3178.4°177.5°
O2SC4C52.3°2.5°
O2SN1HN180.5°130.0°
C4SN1C1179.8°63.6°
SC4C3C2178.7°180.0°
SC4C3C5179.2°180.0°
SC4C3C71.5°0.0°
SC4C5C6178.7°179.7°
C4SN1HN1160.1°116.4°
SC4C5H51.3°0.0°
BRC1C2C6179.1°179.7°
BRC1C2C3178.7°180.0°
BRC1C2C100.5°0.0°
BRC1C6C5178.6°179.7°
BRC1C6H61.3°0.0°
C1C2C3C10179.2°179.9°
C1C2C3C40.5°0.0°
C1C2C3C7179.3°180.0°
C2C1C6C50.5°0.5°
C1C2C10C9179.9°180.0°
C2C1C6H6179.5°179.7°
C1C2C10H100.1°0.0°
C6C1C2C30.5°0.3°
C6C1C2C10179.6°179.8°
C1C6C5C40.6°0.6°
C1C6C5H6180.0°179.7°
C1C6C5H5179.5°179.7°
N1C11C12N2178.7°85.0°
N1C11C12H11120.0°120.0°
N1C11C12H11A120.0°120.0°
N1C11C12C162.0°95.1°
N1C11H11H11A119.8°120.0°
C2C3C4C7179.7°180.0°
C2C3C4C50.5°0.0°
C2C3C7C80.2°0.0°
C3C2C10C90.8°0.1°
C2C3C7H7179.8°179.9°
C3C2C10H10179.3°180.0°
C10C2C3C4179.7°179.9°
C10C2C3C70.1°0.1°
C2C10C9C81.1°0.0°
C2C10C9H10180.0°180.0°
C2C10C9H9178.8°179.9°
N2C12C11C16179.2°179.9°
C12N2C13C140.1°0.0°
N2C12C16C150.9°0.0°
N2C12C11H1158.7°155.0°
N2C12C11H11A61.2°35.0°
C12N2C13H13179.9°180.0°
N2C12C16H16179.2°180.0°
C13N2C12C11179.8°179.9°
C13N2C12C160.6°0.0°
N2C13C14H13180.0°180.0°
N2C13C14C150.3°0.0°
N2C13C14H14179.7°180.0°
C3C4C5C60.5°0.3°
C4C3C7C8179.9°180.0°
C3C4C5H5179.5°180.0°
C4C3C7H70.1°0.1°
C7C3C4C5179.3°180.0°
C3C7C8H7180.0°180.0°
C3C7C8C90.2°0.0°
C3C7C8H8179.8°180.0°
C4C5C6H5180.0°179.7°
C4C5C6H6179.5°179.7°
C7C8C9H8180.0°180.0°
C7C8C9C100.9°0.0°
C7C8C9H9179.1°179.9°
C8C9C10H9180.0°180.0°
C9C8C7H7179.8°180.0°
C8C9C10H10178.9°180.0°
C10C9C8H8179.2°180.0°
C11C12C16C15179.9°179.9°
C12C11N1HN1135.7°16.9°
C12C11H11H11A119.8°120.0°
C11C12C16H160.1°0.1°
C12C16C15C140.6°0.0°
C12C16C15H16180.0°180.0°
C16C12C11H11122.1°24.9°
C16C12C11H11A118.0°145.0°
C12C16C15H15179.4°179.9°
C13C14C15H14180.0°180.0°
C13C14C15C160.0°0.0°
C13C14C15H15180.0°179.9°
C14C15C16H15180.0°179.9°
C15C14C13H13179.6°180.0°
C14C15C16H16179.4°180.0°
C16C15C14H14180.0°180.0°
HN1N1C11H11104.3°103.1°
HN1N1C11H11A15.7°136.9°
H5C5C6H60.5°0.0°
H7C7C8H80.2°0.0°
H8C8C9H90.9°0.0°
H9C9C10H101.1°0.0°
H13C13C14H140.3°0.0°
H14C14C15H150.0°0.0°
H15C15C16H160.6°0.0°

225681

PDB entries from 2024-10-02

PDB statisticsPDBj update infoContact PDBjnumon