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PVY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CAYNAXsing1.46Å1.51Å
NAXCAZsing1.47Å1.47Å
NAXCANsing1.39Å1.38Å
CAMCANdoub1.40Å1.42ÅAromatic
CAMCALsing1.36Å1.40ÅAromatic
CANCAOsing1.39Å1.41ÅAromatic
CALCADdoub1.40Å1.38ÅAromatic
CAOCAEdoub1.39Å1.40ÅAromatic
OBQCBPdoub1.21Å1.25Å
CADCAEsing1.41Å1.41ÅAromatic
CADCACsing1.47Å1.41Å
OBCCBAdoub1.22Å1.21Å
CARCASdoub1.38Å1.42ÅAromatic
CARCAQsing1.40Å1.39ÅAromatic
CASCATsing1.39Å1.42ÅAromatic
CAEOAFsing1.35Å1.38Å
CBACAQsing1.48Å1.42Å
CBANBBsing1.35Å1.38Å
CAQCAPdoub1.39Å1.38ÅAromatic
CATCBPsing1.48Å1.38Å
CATCAGdoub1.41Å1.36ÅAromatic
CBPOBRsing1.35Å1.27Å
CAPCAGsing1.39Å1.39ÅAromatic
CAGCACsing1.47Å1.44Å
NBBCBDsing1.46Å1.48Å
CACCABdoub1.41Å1.40Å
CBDCBEsing1.53Å1.50Å
OAFCAAsing1.35Å1.36Å
CBOCBNsing1.53Å1.54Å
CABCAAsing1.46Å1.40Å
CABCAKsing1.41Å1.40Å
CBNCBMsing1.53Å1.44Å
CBEOBFsing1.43Å1.49Å
CAACAHdoub1.36Å1.39Å
OBFCBGsing1.43Å1.63Å
CBMCBLsing1.53Å1.55Å
CBLCBKsing1.53Å1.55Å
CAKCAJdoub1.35Å1.40Å
CBKCBJsing1.53Å1.50Å
CBHCBGsing1.53Å1.60Å
CBHOBIsing1.43Å1.18Å
CAHCAIsing1.41Å1.41Å
OBICBJsing1.43Å1.35Å
CAJCAIsing1.46Å1.40Å
CAINAUdoub1.33Å1.42Å
NAUCAWsing1.46Å1.48Å
NAUCAVsing1.47Å1.48Å
CBOH1sing1.09Å1.10Å
CBOH2sing1.09Å1.10Å
CBOH3sing1.09Å1.10Å
CBNH4sing1.09Å1.10Å
CBNH5sing1.09Å1.10Å
CBMH6sing1.09Å1.10Å
CBMH7sing1.09Å1.10Å
CBLH8sing1.09Å1.10Å
CBLH9sing1.09Å1.10Å
CBKH10sing1.09Å1.10Å
CBKH11sing1.09Å1.10Å
CBJH12sing1.09Å1.10Å
CBJH13sing1.09Å1.10Å
CBHH14sing1.09Å1.10Å
CBHH15sing1.09Å1.10Å
CBGH16sing1.09Å1.10Å
CBGH17sing1.09Å1.10Å
CBEH18sing1.09Å1.10Å
CBEH19sing1.09Å1.10Å
CBDH20sing1.09Å1.10Å
CBDH21sing1.09Å1.10Å
NBBH22sing0.97Å1.00Å
CAPH23sing1.08Å1.08Å
CARH24sing1.08Å1.08Å
CASH25sing1.08Å1.08Å
OBRH26sing0.97Å0.95Å
CAKH27sing1.08Å1.08Å
CAJH28sing1.08Å1.08Å
CAWH29sing1.09Å1.10Å
CAWH30sing1.09Å1.10Å
CAWH31sing1.09Å1.10Å
CAVH32sing1.09Å1.10Å
CAVH33sing1.09Å1.10Å
CAVH34sing1.09Å1.10Å
CAHH35sing1.08Å1.08Å
CAOH36sing1.08Å1.08Å
CALH37sing1.08Å1.08Å
CAMH38sing1.08Å1.08Å
CAZH39sing1.09Å1.10Å
CAZH40sing1.09Å1.10Å
CAZH41sing1.09Å1.10Å
CAYH42sing1.09Å1.10Å
CAYH43sing1.09Å1.10Å
CAYH44sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAYNAXCAZ118.6°120.0°
CAYNAXCAN121.8°120.0°
NAXCAYH42109.5°109.5°
NAXCAYH43109.5°109.5°
NAXCAYH44109.5°109.5°
CAZNAXCAN119.3°120.0°
NAXCAZH39109.5°109.5°
NAXCAZH40109.5°109.5°
NAXCAZH41109.5°109.4°
NAXCANCAM121.5°119.8°
NAXCANCAO123.2°119.7°
CANCAMCAL122.6°120.3°
CAMCANCAO115.3°120.5°
CANCAMH38118.7°119.8°
CAMCALCAD121.1°120.0°
CAMCALH37119.5°120.0°
CALCAMH38118.7°119.9°
CANCAOCAE121.8°120.0°
CANCAOH36119.1°120.0°
CALCADCAE117.7°120.1°
CALCADCAC121.0°120.4°
CADCALH37119.5°120.0°
CAOCAECAD121.2°119.2°
CAOCAEOAF120.8°119.8°
CAECAOH36119.1°120.0°
OBQCBPCAT116.8°120.0°
OBQCBPOBR123.6°120.0°
CAECADCAC121.1°119.5°
CADCAEOAF118.0°121.0°
CADCACCAG119.8°121.1°
CADCACCAB117.2°117.8°
OBCCBACAQ119.1°120.0°
OBCCBANBB122.2°120.0°
CASCARCAQ118.5°120.3°
CARCASCAT120.1°120.2°
CASCARH24120.7°119.8°
CARCASH25120.0°119.9°
CARCAQCBA123.8°119.9°
CARCAQCAP117.8°120.1°
CAQCARH24120.8°119.8°
CASCATCBP123.3°120.1°
CASCATCAG121.9°119.8°
CATCASH25120.0°119.9°
CAEOAFCAA123.3°122.3°
CAQCBANBB118.2°120.0°
CBACAQCAP118.4°119.9°
CBANBBCBD126.4°120.0°
CBANBBH22116.8°120.0°
CAQCAPCAG126.3°119.8°
CAQCAPH23116.9°120.1°
CBPCATCAG114.7°120.1°
CATCBPOBR119.5°120.0°
CATCAGCAP115.3°119.7°
CATCAGCAC120.2°120.2°
CBPOBRH26109.5°117.0°
CAPCAGCAC124.5°120.1°
CAGCAPH23116.8°120.1°
CAGCACCAB119.9°121.1°
NBBCBDCBE108.2°109.5°
NBBCBDH20109.8°109.5°
NBBCBDH21109.8°109.4°
CBDNBBH22116.8°120.0°
CACCABCAA122.4°118.9°
CACCABCAK120.8°120.6°
CBDCBEOBF107.2°109.5°
CBDCBEH18110.0°109.4°
CBDCBEH19110.1°109.5°
CBECBDH20109.8°109.5°
CBECBDH21109.8°109.4°
OAFCAACAB117.6°120.5°
OAFCAACAH119.5°120.0°
CBOCBNCBM106.3°109.5°
CBNCBOH1109.5°109.5°
CBNCBOH2109.5°109.5°
CBNCBOH3109.5°109.5°
CBOCBNH4110.3°109.5°
CBOCBNH5110.2°109.5°
CAACABCAK116.6°120.4°
CABCAACAH123.0°119.5°
CABCAKCAJ121.4°120.0°
CABCAKH27119.3°120.0°
CBNCBMCBL108.5°109.5°
CBMCBNH4110.2°109.5°
CBMCBNH5110.3°109.5°
CBNCBMH6109.7°109.5°
CBNCBMH7109.7°109.5°
CBEOBFCBG124.7°114.0°
OBFCBEH18110.0°109.5°
OBFCBEH19110.0°109.5°
CAACAHCAI119.5°119.9°
CAACAHH35120.3°120.0°
OBFCBGCBH97.5°109.4°
OBFCBGH16112.3°109.4°
OBFCBGH17112.4°109.5°
CBMCBLCBK99.2°109.5°
CBLCBMH6109.7°109.5°
CBLCBMH7109.7°109.5°
CBMCBLH8112.0°109.5°
CBMCBLH9112.0°109.5°
CBLCBKCBJ117.5°109.5°
CBKCBLH8112.0°109.5°
CBKCBLH9112.0°109.5°
CBLCBKH10107.4°109.5°
CBLCBKH11107.4°109.5°
CAKCAJCAI121.4°120.0°
CAJCAKH27119.3°120.0°
CAKCAJH28119.3°120.0°
CBKCBJOBI106.7°109.5°
CBJCBKH10107.4°109.5°
CBJCBKH11107.4°109.4°
CBKCBJH12110.2°109.5°
CBKCBJH13110.2°109.4°
CBGCBHOBI112.5°109.4°
CBGCBHH14108.7°109.5°
CBGCBHH15108.7°109.5°
CBHCBGH16112.4°109.5°
CBHCBGH17112.4°109.5°
CBHOBICBJ140.0°114.0°
OBICBHH14108.7°109.5°
OBICBHH15108.7°109.5°
CAHCAICAJ118.2°120.2°
CAHCAINAU122.1°119.9°
CAICAHH35120.2°120.0°
OBICBJH12110.1°109.4°
OBICBJH13110.2°109.5°
CAJCAINAU119.6°119.8°
CAICAJH28119.3°120.0°
CAINAUCAW117.2°120.0°
CAINAUCAV120.9°120.0°
CAWNAUCAV122.0°120.0°
NAUCAWH29109.5°109.5°
NAUCAWH30109.5°109.5°
NAUCAWH31109.5°109.5°
NAUCAVH32109.5°109.5°
NAUCAVH33109.5°109.5°
NAUCAVH34109.5°109.5°
H1CBOH2109.4°109.4°
H1CBOH3109.5°109.5°
H2CBOH3109.5°109.5°
H4CBNH5109.5°109.5°
H6CBMH7109.5°109.4°
H8CBLH9109.5°109.5°
H10CBKH11109.5°109.4°
H12CBJH13109.5°109.4°
H14CBHH15109.5°109.5°
H16CBGH17109.5°109.5°
H18CBEH19109.5°109.5°
H20CBDH21109.5°109.4°
H29CAWH30109.5°109.5°
H29CAWH31109.4°109.5°
H30CAWH31109.5°109.5°
H32CAVH33109.5°109.4°
H32CAVH34109.5°109.4°
H33CAVH34109.4°109.5°
H39CAZH40109.4°109.5°
H39CAZH41109.4°109.5°
H40CAZH41109.5°109.5°
H42CAYH43109.5°109.5°
H42CAYH44109.4°109.5°
H43CAYH44109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAYNAXCAZCAN173.8°179.9°
CAYNAXCANCAM16.0°180.0°
CAYNAXCANCAO163.6°0.3°
CAYNAXCAZH39180.0°90.0°
CAYNAXCAZH4060.0°30.0°
CAYNAXCAZH4160.0°150.1°
NAXCAYH42H43120.0°120.0°
NAXCAYH42H44120.0°120.0°
NAXCAYH43H44120.0°120.0°
CAZNAXCANCAM157.6°0.1°
CAZNAXCANCAO22.8°179.6°
NAXCAZH39H40120.0°120.0°
NAXCAZH39H41120.0°119.9°
NAXCAZH40H41120.0°120.0°
CAZNAXCAYH42180.0°90.0°
CAZNAXCAYH4360.0°150.0°
CAZNAXCAYH4460.0°30.0°
NAXCANCAMCAO179.6°179.7°
NAXCANCAMCAL178.4°180.0°
NAXCANCAOCAE177.9°179.8°
NAXCANCAOH362.1°0.3°
NAXCANCAMH381.6°0.3°
CANNAXCAZH396.1°90.0°
CANNAXCAZH40113.8°150.0°
CANNAXCAZH41126.1°30.0°
CANNAXCAYH426.3°90.0°
CANNAXCAYH43126.3°30.0°
CANNAXCAYH44113.7°150.0°
CANCAMCALH38180.0°179.7°
CANCAMCALCAD5.5°0.3°
CAMCANCAOCAE1.8°0.1°
CAMCANCAOH36178.3°180.0°
CANCAMCALH37174.5°179.7°
CALCAMCANCAO2.0°0.3°
CAMCALCADH37180.0°180.0°
CAMCALCADCAE4.9°0.0°
CAMCALCADCAC179.9°179.5°
CANCAOCAEH36180.0°179.9°
CANCAOCAECAD2.2°0.2°
CANCAOCAEOAF179.1°180.0°
CAOCANCAMH38178.0°180.0°
CALCADCAECAO1.2°0.2°
CALCADCAECAC175.2°179.5°
CALCADCAEOAF177.6°180.0°
CALCADCACCAG13.9°0.3°
CALCADCACCAB174.1°180.0°
CADCALCAMH38174.5°180.0°
CAOCAECADOAF178.8°179.8°
CAOCAECADCAC176.4°179.7°
CAOCAEOAFCAA171.6°180.0°
OBQCBPCATCAS26.4°180.0°
OBQCBPCATOBR177.0°180.0°
OBQCBPCATCAG151.8°0.2°
OBQCBPOBRH260.0°0.0°
CAECADCACCAG161.2°179.8°
CAECADCACCAB1.0°0.5°
CADCAEOAFCAA7.2°0.3°
CADCAECAOH36177.8°179.8°
CAECADCALH37175.1°180.0°
CACCADCAEOAF2.4°0.5°
CADCACCAGCAT95.9°74.7°
CADCACCAGCAP85.2°105.3°
CADCACCAGCAB159.7°179.7°
CADCACCABCAA0.1°0.3°
CADCACCABCAK174.7°179.8°
CACCADCALH370.1°0.5°
OBCCBACAQCAR155.2°179.7°
OBCCBACAQNBB172.1°180.0°
OBCCBACAQCAP27.1°0.0°
OBCCBANBBCBD0.7°0.0°
OBCCBANBBH22179.2°180.0°
CASCARCAQH24180.0°180.0°
CARCASCATH25180.0°180.0°
CASCARCAQCBA177.5°180.0°
CASCARCAQCAP0.2°0.2°
CARCASCATCBP178.0°180.0°
CARCASCATCAG0.0°0.2°
CAQCARCASCAT0.1°0.0°
CARCAQCBACAP177.6°179.7°
CARCAQCBANBB32.7°0.3°
CARCAQCAPCAG0.6°0.3°
CARCAQCAPH23179.4°179.8°
CAQCARCASH25179.9°180.0°
CASCATCBPCAG178.2°179.7°
CASCATCBPOBR156.6°0.0°
CASCATCAGCAP0.4°0.2°
CASCATCAGCAC178.6°179.8°
CATCASCARH24179.9°180.0°
CAEOAFCAACAB8.2°0.0°
CAEOAFCAACAH171.5°180.0°
OAFCAECAOH360.9°0.0°
CBACAQCAPCAG177.2°180.0°
CAQCBANBBCBD171.1°180.0°
CAQCBANBBH228.9°0.1°
CBACAQCAPH232.8°0.0°
CBACAQCARH242.5°0.0°
NBBCBACAQCAP144.9°180.0°
CBANBBCBDH22180.0°179.9°
CBANBBCBDCBE95.2°180.0°
CBANBBCBDH20145.0°59.9°
CBANBBCBDH2124.6°60.0°
CAQCAPCAGCAT0.7°0.1°
CAQCAPCAGH23180.0°179.9°
CAQCAPCAGCAC178.3°180.0°
CAPCAQCARH24179.8°179.8°
CBPCATCAGCAP177.8°179.9°
CBPCATCAGCAC3.2°0.0°
CBPCATCASH252.0°0.0°
CATCBPOBRH26176.8°180.0°
CAGCATCBPOBR25.2°179.8°
CATCAGCAPCAC179.0°180.0°
CATCAGCACCAB104.4°104.9°
CATCAGCAPH23179.3°180.0°
CAGCATCASH25180.0°179.8°
CAPCAGCACCAB74.5°75.0°
CAGCACCABCAA160.1°180.0°
CAGCACCABCAK14.5°0.1°
CACCAGCAPH231.7°0.0°
NBBCBDCBEH20119.8°120.1°
NBBCBDCBEH21119.8°120.0°
NBBCBDCBEOBF174.3°65.0°
NBBCBDCBEH1866.1°55.0°
NBBCBDCBEH1954.6°175.0°
NBBCBDH20H21120.6°120.0°
CACCABCAAOAF4.5°0.1°
CACCABCAACAK174.8°180.0°
CACCABCAACAH175.1°180.0°
CACCABCAKCAJ175.9°179.9°
CACCABCAKH274.1°0.0°
CBDCBEOBFH18119.6°120.0°
CBDCBEOBFH19119.6°120.0°
CBDCBEOBFCBG172.4°180.0°
CBDCBEH18H19121.1°120.0°
CBECBDH20H21120.6°119.9°
CBECBDNBBH2284.8°0.0°
OAFCAACABCAH179.7°180.0°
OAFCAACABCAK179.4°180.0°
OAFCAACAHCAI179.5°180.0°
OAFCAACAHH350.5°0.1°
CBOCBNCBMH4119.5°120.0°
CBOCBNCBMH5119.5°120.0°
CBOCBNCBMCBL166.5°NaN°
CBNCBOH1H2120.0°120.0°
CBNCBOH1H3120.0°120.0°
CBNCBOH2H3120.0°120.0°
CBOCBNH4H5121.4°120.0°
CBOCBNCBMH646.7°60.0°
CBOCBNCBMH773.6°60.0°
CAACABCAKCAJ1.0°0.0°
CABCAACAHCAI0.8°0.1°
CAACABCAKH27179.0°180.0°
CABCAACAHH35179.2°180.0°
CAKCABCAACAH0.3°0.0°
CABCAKCAJH27180.0°179.9°
CABCAKCAJCAI0.6°0.0°
CABCAKCAJH28179.4°180.0°
CBNCBMCBLH6119.9°120.1°
CBNCBMCBLH7119.9°120.0°
CBNCBMCBLCBK177.3°180.0°
CBMCBNCBOH1180.0°180.0°
CBMCBNCBOH260.0°60.0°
CBMCBNCBOH360.0°60.0°
CBMCBNH4H5121.5°120.0°
CBNCBMH6H7120.5°120.0°
CBNCBMCBLH859.0°60.0°
CBNCBMCBLH964.4°60.0°
CBEOBFCBGCBH143.2°180.0°
CBEOBFCBGH1625.2°60.0°
CBEOBFCBGH1798.8°60.0°
OBFCBEH18H19121.0°120.0°
OBFCBECBDH2054.5°174.9°
OBFCBECBDH2166.0°55.0°
CAACAHCAIH35180.0°179.9°
CAACAHCAICAJ1.3°0.0°
CAACAHCAINAU176.7°180.0°
OBFCBGCBHH16118.0°120.0°
OBFCBGCBHH17118.0°120.0°
OBFCBGCBHOBI152.8°65.0°
OBFCBGCBHH1486.7°55.0°
OBFCBGCBHH1532.4°175.0°
OBFCBGH16H17125.6°120.0°
CBGOBFCBEH1852.8°60.0°
CBGOBFCBEH1967.9°60.0°
CBMCBLCBKH8118.3°120.0°
CBMCBLCBKH9118.3°120.0°
CBMCBLCBKCBJ164.9°180.0°
CBLCBMCBNH474.0°60.0°
CBLCBMCBNH547.0°60.0°
CBLCBMH6H7120.4°120.0°
CBMCBLH8H9124.8°120.0°
CBMCBLCBKH1043.8°59.9°
CBMCBLCBKH1173.9°60.0°
CBLCBKCBJH10121.1°120.0°
CBLCBKCBJH11121.2°120.0°
CBLCBKCBJOBI25.7°180.0°
CBKCBLCBMH662.8°59.9°
CBKCBLCBMH757.5°60.0°
CBKCBLH8H9124.8°120.0°
CBLCBKH10H11116.3°119.9°
CBLCBKCBJH1293.8°60.0°
CBLCBKCBJH13145.3°60.0°
CAKCAJCAICAH0.6°0.0°
CAKCAJCAIH28180.0°179.9°
CAKCAJCAINAU177.5°180.0°
CBKCBJOBICBH90.4°180.0°
CBKCBJOBIH12119.5°120.1°
CBKCBJOBIH13119.5°120.0°
CBJCBKCBLH876.8°60.0°
CBJCBKCBLH946.6°60.0°
CBJCBKH10H11116.4°120.0°
CBKCBJH12H13121.3°120.0°
CBGCBHOBIH14120.5°120.0°
CBGCBHOBIH15120.5°120.0°
CBGCBHOBICBJ98.2°180.0°
CBGCBHH14H15118.7°120.0°
CBHCBGH16H17125.6°120.0°
CBHOBICBJH12150.1°59.9°
CBHOBICBJH1329.2°60.0°
OBICBHH14H15118.6°120.0°
OBICBHCBGH1634.9°175.0°
OBICBHCBGH1789.1°55.0°
CAHCAICAJNAU178.1°180.0°
CAHCAINAUCAW13.5°180.0°
CAHCAINAUCAV167.9°0.0°
CAHCAICAJH28179.4°180.0°
OBICBJCBKH10146.9°60.0°
OBICBJCBKH1195.4°60.0°
OBICBJH12H13121.3°119.9°
CBJOBICBHH14141.4°60.0°
CBJOBICBHH1522.3°60.0°
CAJCAINAUCAW164.5°0.0°
CAJCAINAUCAV14.1°180.0°
CAICAJCAKH27179.4°180.0°
CAJCAICAHH35178.7°180.0°
CAINAUCAWCAV178.6°180.0°
NAUCAICAJH282.5°0.0°
CAINAUCAWH29180.0°90.0°
CAINAUCAWH3060.0°150.0°
CAINAUCAWH3160.0°30.0°
CAINAUCAVH32180.0°90.0°
CAINAUCAVH3360.0°150.0°
CAINAUCAVH3460.0°30.0°
NAUCAICAHH353.3°0.0°
NAUCAWH29H30120.0°120.0°
NAUCAWH29H31120.0°120.0°
NAUCAWH30H31120.0°120.0°
CAWNAUCAVH321.5°90.0°
CAWNAUCAVH33118.6°30.0°
CAWNAUCAVH34121.5°150.0°
CAVNAUCAWH291.4°90.0°
CAVNAUCAWH30121.4°30.0°
CAVNAUCAWH31118.6°150.0°
NAUCAVH32H33120.0°120.0°
NAUCAVH32H34120.0°120.0°
NAUCAVH33H34120.0°120.0°
H1CBOH2H3120.0°120.1°
H1CBOCBNH460.5°60.0°
H1CBOCBNH560.5°60.1°
H2CBOCBNH459.5°60.0°
H2CBOCBNH5179.6°180.0°
H3CBOCBNH4179.5°180.0°
H3CBOCBNH559.5°60.0°
H4CBNCBMH6166.2°180.0°
H4CBNCBMH745.9°60.0°
H5CBNCBMH672.8°60.0°
H5CBNCBMH7166.9°180.0°
H6CBMCBLH8178.9°179.9°
H6CBMCBLH955.5°60.1°
H7CBMCBLH860.8°60.0°
H7CBMCBLH9175.8°180.0°
H8CBLCBKH10162.1°179.9°
H8CBLCBKH1144.4°60.0°
H9CBLCBKH1074.5°60.1°
H9CBLCBKH11167.8°180.0°
H10CBKCBJH1227.3°180.0°
H10CBKCBJH1393.6°60.0°
H11CBKCBJH12145.0°60.0°
H11CBKCBJH1324.1°180.0°
H14CBHCBGH16155.3°65.0°
H14CBHCBGH1731.3°175.0°
H15CBHCBGH1685.6°55.0°
H15CBHCBGH17150.4°65.0°
H18CBECBDH20174.1°65.1°
H18CBECBDH2153.7°175.0°
H19CBECBDH2065.2°54.9°
H19CBECBDH21174.4°65.0°
H20CBDNBBH2235.0°120.0°
H21CBDNBBH22155.4°120.0°
H24CARCASH250.1°0.0°
H27CAKCAJH280.6°0.1°
H29CAWH30H31119.9°120.0°
H32CAVH33H34120.0°120.0°
H37CALCAMH385.5°0.0°
H39CAZH40H41119.9°120.0°
H42CAYH43H44120.0°120.0°

223790

PDB entries from 2024-08-14

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