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PVX

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OC4Bsing1.36Å1.47Å
OCMsing1.43Å1.46Å
PO1Psing1.61Å1.49Å
PO3Pdoub1.48Å1.48Å
C1C2Asing1.49Å1.53Å
C1CB1sing1.48Å1.41Å
N1C6sing1.34Å1.38Å
O1C1doub1.21Å1.23Å
C2N1doub1.32Å1.34Å
N2C2sing1.37Å1.44Å
N2HN2sing0.97Å1.00Å
N2HN2Asing0.97Å1.00Å
C3C3Asing1.48Å1.54Å
C3H3sing1.08Å1.08Å
N3C2sing1.36Å1.48Å
N3C4sing1.35Å1.37Å
N3HN3sing0.97Å1.00Å
C4C5sing1.40Å1.46Å
O4C4doub1.22Å1.22Å
C5N7sing1.41Å1.52Å
C5C6doub1.39Å1.42Å
C6N6sing1.38Å1.45Å
N6C1Dsing1.46Å1.45Å
N7C8sing1.35Å1.35Å
C8O8doub1.21Å1.23Å
C8H8sing1.08Å1.08Å
C9C8Asing1.54Å1.52Å
C9H9sing1.09Å1.10Å
O9C9sing1.43Å1.40Å
O9HO9sing0.97Å0.95Å
CMHMsing1.09Å1.10Å
CMHMAsing1.09Å1.10Å
CMHMBsing1.09Å1.10Å
O10CA1sing1.35Å1.46Å
C11O10sing1.35Å1.45Å
O11C11doub1.22Å1.23Å
C1DC2Dsing1.54Å1.52Å
C1DH1Dsing1.09Å1.10Å
O1PHO1Psing0.97Å0.95Å
C2AC3doub1.33Å1.55Å
C2AH2Asing1.08Å1.08Å
C2DC3'sing1.55Å1.52Å
C2DH2Dsing1.09Å1.10Å
C2DH2DAsing1.09Å1.10Å
C3'O3'sing1.43Å1.48Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C3AC4Asing1.41Å1.44Å
O2PPsing1.61Å1.61Å
C4ACA1doub1.42Å1.44ÅAromatic
C4AC4Bsing1.41Å1.48ÅAromatic
C4BC5Bdoub1.38Å1.47ÅAromatic
C4DC3'sing1.55Å1.53Å
C4DH4Dsing1.09Å1.10Å
O4DC1Dsing1.44Å1.46Å
O4DC4Dsing1.44Å1.44Å
C5BC5Msing1.40Å1.42ÅAromatic
C5BH5Bsing1.08Å1.08Å
C5DC4Dsing1.53Å1.53Å
C5DH5Dsing1.09Å1.10Å
C5DH5DAsing1.09Å1.10Å
O5DPsing1.61Å1.78Å
O5DC5Dsing1.43Å1.53Å
C5MO6Asing1.36Å1.41Å
C6AO7sing1.43Å1.40Å
C6AO6Asing1.44Å1.42Å
C6AH6Asing1.09Å1.10Å
C8AN7sing1.46Å1.51Å
C8AO7sing1.43Å1.45Å
C8AH8Asing1.09Å1.10Å
C9AC9sing1.54Å1.52Å
C9AC6Asing1.56Å1.55Å
C9AH9Asing1.09Å1.10Å
C9BC5Mdoub1.39Å1.37ÅAromatic
C9BC9Asing1.52Å1.51Å
CA1C9Bsing1.38Å1.42ÅAromatic
CB1C11sing1.40Å1.44Å
CB1C3Adoub1.41Å1.38Å
N6H25sing0.97Å1.00Å
O2PHO2Psing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4BOCM118.2°117.0°
OC4BC4A121.8°120.1°
OC4BC5B120.5°120.0°
OCMHM109.5°109.5°
OCMHMA109.5°109.5°
OCMHMB109.5°109.4°
O1PPO3P120.3°109.5°
PO1PHO1P109.5°114.0°
O1PPO2P107.0°109.5°
O1PPO5D107.2°109.5°
O3PPO2P107.5°109.5°
O3PPO5D108.5°109.5°
C2AC1CB1109.2°106.5°
C2AC1O1121.3°126.7°
C1C2AC3105.5°108.6°
C1C2AH2A127.3°125.6°
CB1C1O1129.4°126.7°
C1CB1C11125.2°133.6°
C1CB1C3A111.5°106.7°
C6N1C2118.1°121.2°
N1C6C5125.3°119.7°
N1C6N6116.7°120.2°
N1C2N2118.1°119.2°
N1C2N3120.9°121.5°
C2N2HN2120.0°120.0°
C2N2HN2A120.0°120.0°
N2C2N3121.0°119.3°
HN2N2HN2A120.0°120.0°
C3AC3H3128.4°125.1°
C3AC3C2A103.2°109.9°
C3C3AC4A128.2°133.4°
C3C3ACB1110.6°108.3°
H3C3C2A128.4°125.0°
C2N3C4120.0°120.2°
C2N3HN3120.0°119.9°
C4N3HN3120.0°119.9°
N3C4C5120.1°118.8°
N3C4O4117.2°120.6°
C5C4O4122.7°120.6°
C4C5N7120.8°120.7°
C4C5C6115.6°118.6°
N7C5C6123.7°120.7°
C5N7C8115.7°120.0°
C5N7C8A122.0°120.0°
C5C6N6118.0°120.1°
C6N6C1D118.2°120.0°
C6N6H25106.7°120.0°
N6C1DC2D108.2°109.9°
N6C1DH1D108.7°109.9°
N6C1DO4D110.2°109.9°
C1DN6H25106.7°120.0°
N7C8O8123.2°120.0°
N7C8H8118.4°120.0°
C8N7C8A122.3°120.0°
O8C8H8118.4°120.0°
C8AC9H9110.5°110.4°
C8AC9O9111.9°110.3°
C9C8AN7111.7°109.7°
C9C8AO7106.8°108.0°
C9C8AH8A110.5°109.8°
C8AC9C9A105.9°104.9°
H9C9O9106.4°110.3°
H9C9C9A112.3°110.4°
C9O9HO9109.5°114.0°
O9C9C9A110.1°110.4°
HMCMHMA109.5°109.5°
HMCMHMB109.4°109.5°
HMACMHMB109.5°109.5°
CA1O10C11117.1°121.6°
O10CA1C4A123.9°120.3°
O10CA1C9B116.5°120.4°
O10C11O11115.3°119.6°
O10C11CB1118.2°120.8°
O11C11CB1126.5°119.6°
C2DC1DH1D112.8°109.8°
C1DC2DC3'100.7°104.2°
C1DC2DH2D112.5°110.5°
C1DC2DH2DA112.5°110.5°
C2DC1DO4D105.8°107.3°
H1DC1DO4D111.0°110.0°
C3C2AH2A127.3°125.8°
C3'C2DH2D112.5°110.5°
C3'C2DH2DA112.5°110.5°
C2DC3'O3'109.9°110.9°
C2DC3'H3'114.3°110.9°
C2DC3'C4D103.2°102.1°
H2DC2DH2DA106.3°110.5°
O3'C3'H3'105.4°110.8°
C3'O3'HO3'109.5°114.0°
O3'C3'C4D112.4°110.9°
H3'C3'C4D111.9°110.9°
C3AC4ACA1116.3°119.4°
C3AC4AC4B124.5°121.0°
C4AC3ACB1121.2°118.3°
O2PPO5D105.4°109.5°
PO2PHO2P109.5°114.0°
CA1C4AC4B119.1°119.6°
C4ACA1C9B119.6°119.3°
C4AC4BC5B117.7°119.8°
C4BC5BC5M119.8°120.6°
C4BC5BH5B120.1°119.7°
C3'C4DH4D112.6°110.6°
C3'C4DO4D101.0°103.5°
C3'C4DC5D113.0°110.6°
H4DC4DO4D116.3°110.6°
H4DC4DC5D105.0°110.5°
C1DO4DC4D110.5°107.0°
O4DC4DC5D109.1°110.8°
C5MC5BH5B120.1°119.7°
C5BC5MO6A126.5°129.4°
C5BC5MC9B121.1°119.6°
C4DC5DH5D109.0°109.5°
C4DC5DH5DA109.0°109.5°
C4DC5DO5D110.8°109.5°
H5DC5DH5DA109.9°109.5°
H5DC5DO5D109.1°109.5°
H5DAC5DO5D109.0°109.4°
PO5DC5D131.2°123.0°
C5MO6AC6A105.7°109.4°
O6AC5MC9B112.3°111.1°
O7C6AO6A108.9°109.9°
O7C6AH6A112.6°112.4°
C6AO7C8A113.7°109.1°
O7C6AC9A106.2°105.5°
O6AC6AH6A107.7°112.5°
O6AC6AC9A111.3°102.6°
H6AC6AC9A110.2°113.3°
N7C8AO7111.7°109.8°
N7C8AH8A105.5°109.8°
O7C8AH8A110.6°109.8°
C9C9AC6A106.7°103.2°
C9C9AH9A105.6°113.7°
C9C9AC9B113.8°108.7°
C6AC9AH9A119.2°114.0°
C6AC9AC9B98.8°101.5°
H9AC9AC9B112.7°114.5°
C5MC9BC9A111.1°107.2°
C5MC9BCA1122.6°121.1°
C9AC9BCA1126.3°131.7°
C11CB1C3A123.2°119.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C4BOCMHM180.0°60.0°
C4BOCMHMA60.0°180.0°
C4BOCMHMB60.0°60.0°
OC4BC4AC3A0.8°0.2°
OC4BC4ACA1180.0°179.9°
OC4BC4AC5B179.9°179.9°
OC4BC5BC5M179.3°179.9°
OC4BC5BH5B0.7°0.1°
OCMHMHMA120.0°120.0°
OCMHMHMB120.0°120.0°
OCMHMAHMB120.0°120.0°
CMOC4BC4A180.0°180.0°
CMOC4BC5B0.0°0.0°
O1PPO3PO2P122.7°120.0°
O1PPO3PO5D123.8°120.0°
O1PPO2PO5D113.9°120.0°
O1PPO5DC5D0.2°65.0°
O1PPO2PHO2P130.6°60.0°
O3PPO1PHO1P0.0°180.0°
O3PPO2PO5D115.6°120.0°
O3PPO5DC5D131.5°55.0°
O3PPO2PHO2P0.0°60.0°
C2AC1CB1O1179.3°179.8°
C1C2AC3C3A0.1°0.0°
C1C2AC3H3179.9°180.0°
C1C2AC3H2A180.0°179.9°
C2AC1CB1C11179.6°180.0°
C2AC1CB1C3A0.6°0.0°
C1CB1C3AC30.6°0.0°
C1CB1C11O10179.9°179.9°
C1CB1C11O110.9°0.1°
CB1C1C2AC30.4°0.0°
CB1C1C2AH2A179.6°179.9°
C1CB1C3AC4A179.9°180.0°
C1CB1C11C3A178.9°180.0°
C6N1C2N2179.8°180.0°
C6N1C2N30.3°0.0°
N1C6C5C40.1°0.0°
N1C6C5N7179.6°180.0°
N1C6C5N6180.0°180.0°
N1C6N6C1D6.6°5.1°
N1C6N6H25113.4°174.9°
O1C1C2AC3179.8°179.8°
O1C1C2AH2A0.2°0.3°
O1C1CB1C111.1°0.2°
O1C1CB1C3A179.9°179.8°
N1C2N2N3179.9°180.0°
N1C2N2HN20.0°0.0°
N1C2N2HN2A180.0°180.0°
N1C2N3C40.2°0.1°
N1C2N3HN3179.8°180.0°
C2N1C6C50.3°0.0°
C2N1C6N6179.7°180.0°
C2N2HN2HN2A179.9°180.0°
N2C2N3C4179.9°179.9°
N2C2N3HN30.0°0.0°
HN2N2C2N3179.9°180.0°
HN2AN2C2N30.1°0.0°
C3AC3H3C2A180.0°180.0°
C3AC3C2AH2A179.9°179.9°
C3C3AC4ACB1179.4°179.9°
C3C3AC4ACA1179.9°179.8°
C3C3AC4AC4B0.7°0.1°
C3C3ACB1C11179.6°180.0°
H3C3C2AH2A0.0°0.1°
H3C3C3AC4A0.3°0.0°
H3C3C3ACB1179.7°180.0°
C2N3C4HN3180.0°179.9°
C2N3C4C50.0°0.1°
C2N3C4O4179.8°180.0°
N3C4C5O4179.8°179.9°
N3C4C5N7179.5°180.0°
N3C4C5C60.0°0.1°
HN3N3C4C5180.0°180.0°
HN3N3C4O40.2°0.0°
C4C5N7C6179.5°179.9°
C4C5C6N6179.8°179.9°
C4C5N7C895.5°65.3°
C4C5N7C8A84.4°114.8°
O4C4C5N70.3°0.1°
O4C4C5C6179.8°180.0°
N7C5C6N60.3°0.0°
C5N7C8C8A179.9°179.9°
C5N7C8O8179.9°175.0°
C5N7C8H80.1°5.0°
C5N7C8AC961.4°105.0°
C5N7C8AO758.2°13.5°
C5N7C8AH8A178.4°134.3°
C5C6N6C1D173.3°174.8°
C6C5N7C885.0°114.8°
C6C5N7C8A95.1°65.2°
C5C6N6H2566.7°5.1°
C6N6C1DH25120.0°180.0°
C6N6C1DC2D150.8°145.0°
C6N6C1DH1D27.9°24.0°
C6N6C1DO4D93.9°97.2°
N6C1DC2DH1D120.3°121.0°
N6C1DC2DO4D118.1°119.5°
N6C1DH1DO4D121.3°121.1°
N6C1DC2DC3'143.4°121.5°
N6C1DC2DH2D96.6°119.9°
N6C1DC2DH2DA23.4°2.8°
N6C1DO4DC4D116.6°145.9°
N7C8O8H8180.0°180.0°
C8N7C8AC9118.5°75.1°
C8N7C8AO7121.9°166.5°
C8N7C8AH8A1.7°45.7°
O8C8N7C8A0.0°4.9°
H8C8N7C8A179.9°175.1°
C8AC9H9O9121.6°122.2°
C8AC9H9C9A118.0°115.5°
C8AC9O9C9A117.5°115.5°
C8AC9O9HO9180.0°61.5°
C9C8AO7C6A2.4°20.4°
C9C8AN7O7119.6°118.5°
C9C8AN7H8A120.2°120.7°
C9C8AO7H8A120.3°119.7°
C8AC9C9AC6A6.7°16.2°
C8AC9C9AH9A134.5°107.8°
C8AC9C9AC9B101.3°123.4°
H9C9O9C9A121.8°122.3°
H9C9O9HO959.3°60.7°
H9C9C8AN72.3°0.6°
H9C9C8AO7124.8°120.2°
H9C9C8AH8A114.9°120.1°
H9C9C9AC6A127.3°102.7°
H9C9C9AH9A104.8°133.3°
H9C9C9AC9B19.4°4.5°
O9C9C8AN7120.6°122.7°
O9C9C8AO7117.0°117.6°
O9C9C8AH8A3.4°2.0°
O9C9C9AC6A114.4°135.1°
O9C9C9AH9A13.4°11.1°
O9C9C9AC9B137.6°117.7°
HO9O9C9C9A62.6°177.0°
HMCMHMAHMB119.9°120.0°
CA1O10C11O11179.7°180.0°
O10CA1C4AC3A0.8°0.4°
O10CA1C4AC9B179.9°179.8°
O10CA1C4AC4B179.9°179.7°
O10CA1C9BC5M179.5°179.6°
O10CA1C9BC9A0.1°0.7°
CA1O10C11CB11.0°0.1°
O10C11O11CB1179.2°180.0°
C11O10CA1C4A1.0°0.2°
C11O10CA1C9B178.9°179.6°
O10C11CB1C3A1.1°0.2°
O11C11CB1C3A179.8°179.9°
C2DC1DH1DO4D118.6°117.9°
C1DC2DC3'H2D120.0°118.7°
C1DC2DC3'H2DA120.0°118.7°
C1DC2DH2DH2DA123.5°122.6°
C1DC2DC3'O3'79.2°139.1°
C1DC2DC3'H3'162.6°97.4°
C1DC2DC3'C4D40.9°20.9°
C2DC1DO4DC4D0.2°26.5°
C2DC1DN6H2530.8°35.0°
H1DC1DC2DC3'96.2°117.5°
H1DC1DC2DH2D23.8°1.2°
H1DC1DC2DH2DA143.8°123.8°
H1DC1DO4DC4D123.0°93.0°
H1DC1DN6H2592.1°156.0°
HO1PO1PPO2P122.9°60.0°
HO1PO1PPO5D124.4°60.0°
C2AC3C3AC4A179.7°180.0°
C2AC3C3ACB10.3°0.0°
C3'C2DH2DH2DA123.5°122.6°
C2DC3'O3'H3'123.6°123.6°
C2DC3'O3'C4D114.3°112.7°
C2DC3'H3'C4D116.8°112.7°
C2DC3'O3'HO3'180.0°61.4°
C2DC3'C4DH4D166.1°81.5°
C3'C2DC1DO4D25.4°2.0°
C2DC3'C4DO4D41.3°37.0°
C2DC3'C4DC5D75.1°155.7°
H2DC2DC3'O3'40.9°20.4°
H2DC2DC3'H3'77.3°144.0°
H2DC2DC3'C4D161.0°97.8°
H2DC2DC1DO4D145.4°120.7°
H2DAC2DC3'O3'160.8°102.2°
H2DAC2DC3'H3'42.6°21.3°
H2DAC2DC3'C4D79.1°139.6°
H2DAC2DC1DO4D94.7°116.7°
O3'C3'H3'C4D122.4°123.6°
O3'C3'C4DH4D47.7°36.7°
O3'C3'C4DO4D77.1°155.2°
O3'C3'C4DC5D166.6°86.1°
H3'C3'O3'HO3'56.4°62.2°
H3'C3'C4DH4D70.6°160.3°
H3'C3'C4DO4D164.6°81.2°
H3'C3'C4DC5D48.2°37.5°
HO3'O3'C3'C4D65.7°174.1°
C3AC4ACA1C4B179.3°179.9°
C3AC4AC4BC5B179.1°179.8°
C3AC4ACA1C9B179.1°179.5°
C4AC3ACB1C110.9°0.0°
O2PPO5DC5D113.6°175.0°
CA1C4AC4BC5B0.1°0.1°
C4ACA1C9BC5M0.3°0.5°
C4ACA1C9BC9A180.0°179.2°
CA1C4AC3ACB10.7°0.3°
C4AC4BC5BC5M0.6°0.2°
C4AC4BC5BH5B179.4°179.9°
C4BC4ACA1C9B0.2°0.4°
C4BC4AC3ACB1180.0°179.8°
C4BC5BC5MH5B180.0°179.9°
C4BC5BC5MO6A179.6°179.7°
C4BC5BC5MC9B1.2°0.1°
C3'C4DH4DO4D115.9°114.1°
C3'C4DH4DC5D123.4°122.9°
C3'C4DO4DC1D25.6°40.0°
C3'C4DO4DC5D119.2°118.6°
C3'C4DC5DH5D10.4°55.0°
C3'C4DC5DH5DA109.6°65.0°
C3'C4DC5DO5D130.4°175.0°
H4DC4DO4DC1D147.8°78.5°
H4DC4DO4DC5D118.5°122.9°
H4DC4DC5DH5D112.7°67.8°
H4DC4DC5DH5DA127.3°172.1°
H4DC4DC5DO5D7.3°52.1°
C1DO4DC4DC5D93.7°158.6°
O4DC1DN6H25146.1°82.8°
O4DC4DC5DH5D121.9°169.2°
O4DC4DC5DH5DA1.9°49.1°
O4DC4DC5DO5D118.1°70.8°
C5BC5MO6AC9B179.3°179.6°
C5BC5MO6AC6A175.4°160.8°
C5BC5MC9BC9A179.3°179.5°
C5BC5MC9BCA11.0°0.3°
H5BC5BC5MO6A0.4°0.4°
H5BC5BC5MC9B178.8°180.0°
C4DC5DH5DH5DA119.4°120.0°
C4DC5DH5DO5D121.1°120.0°
C4DC5DH5DAO5D121.1°120.0°
C4DC5DO5DP16.4°180.0°
H5DC5DH5DAO5D119.5°120.0°
H5DC5DO5DP103.6°60.0°
H5DAC5DO5DP136.4°60.0°
O5DPO2PHO2P115.6°180.0°
C5MO6AC6AO7108.2°140.5°
C5MO6AC6AH6A129.5°93.4°
C5MO6AC6AC9A8.5°28.7°
O6AC5MC9BC9A0.0°0.9°
O6AC5MC9BCA1179.6°179.4°
O7C6AO6AH6A122.4°126.1°
O7C6AO6AC9A116.7°111.8°
O7C6AH6AC9A118.4°119.4°
C6AO7C8AN7124.8°99.1°
C6AO7C8AH8A118.0°140.1°
O7C6AC9AC98.1°28.6°
O7C6AC9AH9A127.4°95.2°
O7C6AC9AC9B110.2°141.2°
O6AC6AH6AC9A121.5°115.8°
O6AC6AO7C8A126.4°78.9°
O6AC6AC9AC9126.4°86.5°
O6AC6AC9AH9A114.2°149.7°
C6AO6AC5MC9B5.3°19.6°
O6AC6AC9AC9B8.1°26.1°
H6AC6AO7C8A114.2°154.9°
H6AC6AC9AC9114.2°152.0°
H6AC6AC9AH9A5.2°28.2°
H6AC6AC9AC9B127.5°95.4°
N7C8AO7H8A117.2°120.8°
N7C8AC9C9A119.5°118.4°
O7C8AC9C9A3.0°1.3°
C8AO7C6AC9A6.6°31.0°
H8AC8AC9C9A123.3°120.9°
C9C9AC6AH9A119.4°123.8°
C9C9AC6AC9B118.3°112.6°
C9C9AH9AC9B124.9°125.8°
C9C9AC9BC5M117.6°92.3°
C9C9AC9BCA162.1°87.9°
C6AC9AH9AC9B115.2°116.2°
C6AC9AC9BC5M4.8°16.0°
C6AC9AC9BCA1174.9°163.7°
H9AC9AC9BC5M122.1°139.3°
H9AC9AC9BCA158.2°40.5°
C5MC9BC9ACA1179.7°179.7°

248942

PDB entries from 2026-02-11

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