Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PVM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C26N27sing1.47Å1.45Å
C26C25sing1.53Å1.50Å
N27N31sing1.29Å1.35ÅAromatic
N27C28sing1.35Å1.36ÅAromatic
C25Osing1.43Å1.41Å
N31N30doub1.29Å1.32ÅAromatic
C28C29doub1.37Å1.38ÅAromatic
C42C41doub1.38Å1.38ÅAromatic
C42C43sing1.39Å1.38ÅAromatic
OC7sing1.36Å1.39Å
O46C43sing1.36Å1.39Å
O46C47sing1.43Å1.43Å
N30C29sing1.35Å1.37ÅAromatic
C41C40sing1.39Å1.38ÅAromatic
C29C32sing1.48Å1.44Å
C43C44doub1.39Å1.38ÅAromatic
C8C7doub1.38Å1.38ÅAromatic
C8C3sing1.39Å1.38ÅAromatic
C7C6sing1.39Å1.38ÅAromatic
C32N37doub1.32Å1.29Å
C32C33sing1.41Å1.47Å
N37N36sing1.40Å1.35Å
C4C3sing1.51Å1.48Å
C4Csing1.53Å1.51Å
C40N36sing1.40Å1.39Å
C40C45doub1.39Å1.38ÅAromatic
C3C2doub1.38Å1.38ÅAromatic
C44C45sing1.38Å1.37ÅAromatic
C33C34doub1.36Å1.34Å
N36C35sing1.35Å1.38Å
C6O9sing1.36Å1.38Å
C6C5doub1.38Å1.37ÅAromatic
O9C19sing1.36Å1.39Å
CNsing1.47Å1.49Å
C34C35sing1.41Å1.49Å
C34C38sing1.51Å1.48Å
C35O39doub1.22Å1.23Å
C2C5sing1.39Å1.38ÅAromatic
C2C1sing1.51Å1.51Å
C19C24doub1.39Å1.38ÅAromatic
C19C20sing1.39Å1.38ÅAromatic
NC1sing1.47Å1.50Å
C24C23sing1.38Å1.37ÅAromatic
C20C21doub1.38Å1.37ÅAromatic
C1C18sing1.53Å1.51Å
C1C17sing1.53Å1.53Å
C23Fsing1.35Å1.33Å
C23C22doub1.40Å1.38ÅAromatic
C21C22sing1.40Å1.38ÅAromatic
C22C48sing1.47Å1.47Å
C48O50doub1.22Å1.25Å
C48O49sing1.35Å1.25Å
C17C10sing1.51Å1.49Å
C10N11sing1.35Å1.37Å
C10O12doub1.21Å1.22Å
N11C13sing1.39Å1.38Å
C13N16doub1.30Å1.32ÅAromatic
C13Ssing1.71Å1.73ÅAromatic
N16C15sing1.32Å1.37ÅAromatic
SC14sing1.76Å1.71ÅAromatic
C15C14doub1.34Å1.37ÅAromatic
NH1sing1.01Å1.00Å
CH3sing1.09Å1.10Å
CH4sing1.09Å1.10Å
C14H5sing1.08Å1.08Å
C15H6sing1.08Å1.08Å
C17H7sing1.09Å1.10Å
C17H8sing1.09Å1.10Å
C18H9sing1.09Å1.10Å
C18H10sing1.09Å1.10Å
C18H11sing1.09Å1.10Å
C20H12sing1.08Å1.08Å
C21H13sing1.08Å1.08Å
C24H14sing1.08Å1.08Å
C25H15sing1.09Å1.10Å
C25H16sing1.09Å1.10Å
C26H17sing1.09Å1.10Å
C26H18sing1.09Å1.10Å
C28H19sing1.08Å1.08Å
C33H20sing1.08Å1.08Å
C38H21sing1.09Å1.10Å
C38H22sing1.09Å1.10Å
C38H23sing1.09Å1.10Å
C4H24sing1.09Å1.10Å
C4H25sing1.09Å1.10Å
C41H26sing1.08Å1.08Å
C42H27sing1.08Å1.08Å
C44H28sing1.08Å1.08Å
C45H29sing1.08Å1.08Å
C47H30sing1.09Å1.10Å
C47H31sing1.09Å1.10Å
C47H32sing1.09Å1.10Å
C5H33sing1.08Å1.08Å
C8H34sing1.08Å1.08Å
N11H35sing0.97Å1.00Å
O49H36sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N27C26C25109.2°109.5°
C26N27N31121.6°125.8°
C26N27C28125.5°125.7°
N27C26H17109.6°109.5°
N27C26H18109.6°109.5°
C26C25O104.5°109.5°
C26C25H15110.7°109.5°
C26C25H16110.7°109.5°
C25C26H17109.5°109.5°
C25C26H18109.6°109.5°
N31N27C28112.9°108.6°
N27N31N30106.5°110.5°
N27C28C29102.6°106.0°
N27C28H19128.7°127.0°
C25OC7113.8°117.0°
OC25H15110.7°109.4°
OC25H16110.7°109.5°
N31N30C29108.2°108.8°
C28C29N30109.9°106.2°
C28C29C32125.3°126.9°
C29C28H19128.7°127.0°
C41C42C43118.4°120.0°
C42C41C40119.6°120.0°
C42C41H26120.2°120.0°
C41C42H27120.8°120.0°
C42C43O46118.2°120.0°
C42C43C44122.1°120.0°
C43C42H27120.8°119.9°
OC7C8124.9°120.2°
OC7C6116.0°120.2°
C43O46C47107.8°117.0°
O46C43C44119.7°119.9°
O46C47H30109.5°109.4°
O46C47H31109.5°109.4°
O46C47H32109.5°109.4°
N30C29C32124.8°126.9°
C41C40N36120.2°120.0°
C41C40C45121.8°120.0°
C40C41H26120.2°120.0°
C29C32N37118.2°119.8°
C29C32C33115.8°119.8°
C43C44C45119.2°120.0°
C43C44H28120.4°120.0°
C7C8C3120.1°120.4°
C8C7C6119.1°119.7°
C7C8H34120.0°119.8°
C8C3C4115.1°118.4°
C8C3C2121.1°120.0°
C3C8H34120.0°119.8°
C7C6O9120.5°120.1°
C7C6C5120.8°119.7°
N37C32C33126.0°120.3°
C32N37N36115.9°120.7°
C32C33C34116.8°119.7°
C32C33H20121.6°120.2°
N37N36C40111.8°119.9°
N37N36C35126.2°120.2°
C3C4C114.6°110.0°
C4C3C2123.8°121.6°
C3C4H24108.2°109.4°
C3C4H25108.2°109.4°
C4CN110.6°108.5°
C4CH3109.2°109.7°
C4CH4109.2°109.8°
CC4H24108.2°109.4°
CC4H25108.2°109.4°
N36C40C45118.0°120.0°
C40N36C35119.1°119.9°
C40C45C44119.0°120.0°
C40C45H29120.5°120.1°
C3C2C5118.2°119.8°
C3C2C1120.7°121.8°
C45C44H28120.4°120.0°
C44C45H29120.5°120.0°
C33C34C35119.5°119.3°
C33C34C38120.9°120.4°
C34C33H20121.6°120.1°
N36C35C34115.6°119.7°
N36C35O39122.7°120.2°
O9C6C5118.6°120.2°
C6O9C19115.6°118.0°
C6C5C2120.7°120.4°
C6C5H33119.6°119.8°
O9C19C24116.4°119.9°
O9C19C20123.1°119.9°
CNC1116.7°110.3°
CNH1107.6°111.0°
NCH3109.2°109.6°
NCH4109.2°109.6°
C35C34C38119.6°120.3°
C34C35O39121.7°120.2°
C34C38H21109.5°109.4°
C34C38H22109.4°109.5°
C34C38H23109.5°109.5°
C5C2C1121.1°118.3°
C2C5H33119.7°119.8°
C2C1N112.2°110.5°
C2C1C18109.4°109.3°
C2C1C17114.1°109.3°
C24C19C20120.5°120.2°
C19C24C23118.9°120.1°
C19C24H14120.6°119.9°
C19C20C21120.1°120.1°
C19C20H12119.9°119.9°
NC1C18105.3°109.2°
NC1C17103.9°109.2°
C1NH1107.6°111.0°
C24C23F116.5°120.1°
C24C23C22121.4°119.8°
C23C24H14120.6°120.0°
C20C21C22119.9°119.9°
C21C20H12120.0°119.9°
C20C21H13120.0°120.0°
C18C1C17111.5°109.3°
C1C18H9109.5°109.5°
C1C18H10109.5°109.5°
C1C18H11109.5°109.5°
C1C17C10116.8°109.5°
C1C17H7107.6°109.4°
C1C17H8107.6°109.5°
FC23C22122.0°120.1°
C23C22C21119.2°119.8°
C23C22C48121.8°120.1°
C21C22C48119.0°120.1°
C22C21H13120.0°120.0°
C22C48O50116.7°120.0°
C22C48O49118.6°119.9°
O50C48O49124.8°120.0°
C48O49H36109.5°116.9°
C17C10N11111.8°120.0°
C17C10O12121.0°120.0°
C10C17H7107.6°109.4°
C10C17H8107.6°109.5°
N11C10O12127.3°120.0°
C10N11C13124.7°120.0°
C10N11H35117.6°119.9°
N11C13N16124.0°124.9°
N11C13S120.0°124.9°
C13N11H35117.7°120.1°
N16C13S116.0°110.1°
C13N16C15109.4°116.9°
C13SC1488.5°90.3°
N16C15C14115.8°114.6°
N16C15H6122.1°122.8°
SC14C15110.3°108.0°
SC14H5124.9°126.0°
C15C14H5124.9°126.0°
C14C15H6122.1°122.6°
H3CH4109.5°109.6°
H7C17H8109.4°109.5°
H9C18H10109.4°109.4°
H9C18H11109.5°109.5°
H10C18H11109.5°109.4°
H15C25H16109.5°109.5°
H17C26H18109.5°109.4°
H21C38H22109.5°109.4°
H21C38H23109.5°109.5°
H22C38H23109.5°109.5°
H24C4H25109.5°109.2°
H30C47H31109.4°109.5°
H30C47H32109.5°109.5°
H31C47H32109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N27C26C25H17120.0°120.0°
N27C26C25H18120.0°120.0°
C26N27N31C28178.0°180.0°
N27C26C25O60.5°179.9°
C26N27N31N30178.9°179.8°
C26N27C28C29178.8°180.0°
N27C26C25H1558.7°60.0°
N27C26C25H16179.7°60.0°
N27C26H17H18120.2°120.0°
C26N27C28H191.2°0.3°
C25C26N27N3194.0°55.0°
C25C26N27C2888.3°125.0°
C26C25OH15119.2°119.9°
C26C25OH16119.2°120.0°
C26C25OC7171.6°180.0°
C26C25H15H16122.3°120.0°
C25C26H17H18120.1°120.0°
N31N27C28C290.9°0.0°
N27N31N30C290.5°0.3°
N31N27C26H17146.0°175.1°
N31N27C26H1825.9°65.0°
N31N27C28H19179.1°179.7°
C28N27N31N301.0°0.2°
N27C28C29H19180.0°179.8°
N27C28C29N300.6°0.2°
N27C28C29C32178.2°179.7°
C28N27C26H1731.7°4.9°
C28N27C26H18151.8°115.0°
C25OC7C818.4°0.0°
C25OC7C6162.6°180.0°
OC25H15H16122.3°120.0°
OC25C26H17179.5°60.0°
OC25C26H1859.5°59.9°
N31N30C29C280.0°0.3°
N31N30C29C32177.6°179.5°
C28C29N30C32177.6°179.9°
C28C29C32N371.7°0.1°
C28C29C32C33176.8°179.8°
C41C42C43H27180.0°180.0°
C41C42C43O46179.3°180.0°
C42C41C40H26180.0°180.0°
C41C42C43C440.9°0.0°
C42C41C40N36178.0°180.0°
C42C41C40C451.3°0.2°
C42C43O46C44178.4°180.0°
C42C43O46C47126.6°180.0°
C43C42C41C400.7°0.0°
C42C43C44C452.0°0.3°
C43C42C41H26179.3°180.0°
C42C43C44H28178.0°180.0°
OC7C8C6179.0°179.9°
OC7C8C3178.5°179.9°
OC7C6O90.6°0.1°
OC7C6C5177.6°180.0°
C7OC25H1569.2°60.0°
C7OC25H1652.4°60.0°
OC7C8H341.5°0.2°
O46C43C44C45179.7°179.7°
O46C43C42H270.7°0.0°
O46C43C44H280.3°0.1°
C43O46C47H30180.0°60.1°
C43O46C47H3160.0°60.0°
C43O46C47H3260.0°180.0°
C47O46C43C4455.0°0.0°
O46C47H30H31120.0°120.0°
O46C47H30H32120.0°119.9°
O46C47H31H32120.0°119.9°
N30C29C32N37178.9°179.9°
N30C29C32C330.5°0.4°
N30C29C28H19179.4°179.9°
C41C40N36N3797.5°130.9°
C41C40N36C45179.3°179.8°
C41C40C45C440.2°0.4°
C41C40N36C3564.3°48.7°
C40C41C42H27179.3°180.0°
C41C40C45H29179.8°179.7°
C29C32N37C33178.3°179.6°
C29C32N37N36178.7°179.7°
C29C32C33C34178.6°179.9°
C32C29C28H191.8°0.1°
C29C32C33H201.5°0.1°
C43C44C45C401.4°0.5°
C43C44C45H28180.0°179.8°
C44C43C42H27179.1°180.0°
C43C44C45H29178.6°179.7°
C7C8C3H34180.0°179.9°
C7C8C3C4179.0°179.8°
C7C8C3C20.8°0.1°
C8C7C6O9179.7°179.8°
C8C7C6C51.5°0.1°
C3C8C7C60.5°0.0°
C8C3C4C2178.1°179.9°
C8C3C4C167.7°163.2°
C8C3C2C51.0°0.2°
C8C3C2C1179.6°179.7°
C8C3C4H2447.0°43.0°
C8C3C4H2571.5°76.7°
C7C6O9C5178.2°179.9°
C7C6O9C1975.6°174.5°
C7C6C5C21.3°0.0°
C7C6C5H33178.7°179.9°
C6C7C8H34179.5°179.9°
C32N37N36C40160.6°179.7°
N37C32C33C340.3°0.3°
C32N37N36C350.3°0.6°
N37C32C33H20179.8°179.7°
C33C32N37N360.4°0.6°
C32C33C34H20180.0°180.0°
C32C33C34C350.1°0.0°
C32C33C34C38179.7°180.0°
N37N36C40C35161.8°179.7°
N37N36C40C4583.2°48.9°
N37N36C35C340.2°0.3°
N37N36C35O39179.8°179.7°
C3C4CH24120.7°120.2°
C3C4CH25120.8°120.2°
C3C4CN38.6°50.4°
C4C3C2C5179.0°179.7°
C4C3C2C11.5°0.4°
C3C4CH381.6°69.3°
C3C4CH4158.8°170.2°
C3C4H24H25117.6°119.7°
C4C3C8H341.0°0.3°
CC4C3C214.1°16.9°
C4CNH3120.2°119.7°
C4CNH4120.2°119.9°
C4CNC154.8°71.3°
C4CNH1175.9°52.2°
C4CH3H4119.5°120.6°
CC4H24H25117.7°119.7°
N36C40C45C44179.1°179.7°
C40N36C35C34159.1°179.9°
C40N36C35O3920.9°0.0°
N36C40C41H262.0°0.0°
N36C40C45H290.9°0.1°
C40C45C44H29180.0°179.8°
C45C40N36C35115.0°131.4°
C45C40C41H26178.7°179.8°
C40C45C44H28178.6°179.7°
C3C2C5C60.0°0.1°
C3C2C5C1179.4°179.9°
C3C2C1N14.6°17.5°
C3C2C1C18131.1°102.8°
C3C2C1C17103.2°137.7°
C2C3C4H24134.9°137.1°
C2C3C4H25106.6°103.2°
C3C2C5H33180.0°180.0°
C2C3C8H34179.2°179.8°
C33C34C35N360.0°0.0°
C33C34C35C38179.7°179.9°
C33C34C35O39179.9°180.0°
C33C34C38H21180.0°0.0°
C33C34C38H2260.0°120.0°
C33C34C38H2360.0°120.0°
N36C35C34O39180.0°180.0°
N36C35C34C38179.7°180.0°
O9C6C5C2179.5°179.9°
C6O9C19C24176.9°102.5°
C6O9C19C203.8°77.8°
O9C6C5H330.5°0.2°
C5C6O9C19106.1°5.6°
C6C5C2H33180.0°179.9°
C6C5C2C1179.4°179.7°
O9C19C24C20179.3°179.7°
O9C19C24C23179.5°179.7°
O9C19C20C21179.4°179.8°
O9C19C20H120.6°0.3°
O9C19C24H140.4°0.2°
CNC1C242.2°52.5°
CNC1H1121.1°123.4°
CNC1C18161.1°67.8°
CNC1C1781.5°172.7°
NCH3H4119.5°120.4°
NCC4H24159.4°170.6°
NCC4H2582.1°69.7°
C35C34C33H20180.0°180.0°
C35C34C38H210.3°180.0°
C35C34C38H22119.7°60.1°
C35C34C38H23120.3°59.9°
C38C34C35O390.3°0.1°
C38C34C33H200.3°0.0°
C34C38H21H22120.0°120.0°
C34C38H21H23120.0°120.0°
C34C38H22H23120.0°120.1°
C5C2C1N166.0°162.6°
C5C2C1C1849.5°77.1°
C5C2C1C1776.1°42.4°
C2C1NC18118.9°120.3°
C2C1NC17123.7°120.2°
C2C1C18C17127.1°119.5°
C2C1C17C1047.0°179.0°
C2C1NH1163.2°70.9°
C2C1C17H774.1°59.0°
C2C1C17H8168.1°61.0°
C2C1C18H9180.0°61.0°
C2C1C18H1060.0°59.0°
C2C1C18H1160.0°178.9°
C1C2C5H330.6°0.2°
C19C24C23H14180.0°179.9°
C24C19C20C210.2°0.0°
C19C24C23F179.9°180.0°
C19C24C23C220.0°0.1°
C24C19C20H12179.8°179.9°
C20C19C24C230.2°0.0°
C19C20C21H12180.0°179.9°
C19C20C21C220.1°0.1°
C19C20C21H13179.9°180.0°
C20C19C24H14179.8°180.0°
NC1C18C17112.1°119.5°
NC1C17C10169.5°60.0°
C1NCH365.3°48.4°
C1NCH4175.0°168.8°
NC1C17H748.4°179.9°
NC1C17H869.5°60.0°
NC1C18H959.2°60.0°
NC1C18H1060.8°180.0°
NC1C18H11179.2°60.0°
C24C23FC22179.9°179.9°
C24C23C22C210.2°0.0°
C24C23C22C48179.6°180.0°
C20C21C22C230.3°0.0°
C20C21C22H13180.0°180.0°
C20C21C22C48179.5°180.0°
C18C1C17C1077.6°59.4°
C18C1NH177.8°168.8°
C18C1C17H7161.4°60.5°
C18C1C17H843.5°179.5°
C1C18H9H10120.0°120.0°
C1C18H9H11120.0°120.1°
C1C18H10H11120.0°120.0°
C1C17C10H7121.1°119.9°
C1C17C10H8121.1°120.0°
C1C17C10N11110.2°180.0°
C1C17C10O1271.5°0.1°
C17C1NH139.5°49.4°
C1C17H7H8116.7°120.0°
C17C1C18H952.9°179.5°
C17C1C18H10172.8°60.5°
C17C1C18H1167.2°59.4°
FC23C22C21179.9°180.0°
FC23C22C480.3°0.1°
FC23C24H140.1°0.1°
C23C22C21C48179.8°180.0°
C23C22C48O508.5°0.0°
C23C22C48O49171.5°180.0°
C23C22C21H13179.7°180.0°
C22C23C24H14180.0°180.0°
C21C22C48O50171.7°180.0°
C21C22C48O498.3°0.0°
C22C21C20H12179.9°180.0°
C22C48O50O49180.0°180.0°
C48C22C21H130.5°0.0°
C22C48O49H36179.9°180.0°
O50C48O49H360.0°0.0°
C17C10N11O12178.2°179.9°
C17C10N11C13170.1°180.0°
C10C17H7H8116.7°120.0°
C17C10N11H359.9°0.1°
C10N11C13H35180.0°179.9°
C10N11C13N16173.4°180.0°
C10N11C13S6.8°0.4°
N11C10C17H710.9°60.1°
N11C10C17H8128.7°59.9°
O12C10N11C1311.7°0.1°
O12C10C17H7167.4°120.0°
O12C10C17H849.6°119.9°
O12C10N11H35168.3°180.0°
N11C13N16S179.7°179.6°
N11C13N16C15179.6°179.7°
N11C13SC14179.7°179.7°
N16C13SC140.1°0.0°
C13N16C15C140.1°0.0°
C13N16C15H6179.8°180.0°
N16C13N11H356.5°0.1°
SC13N16C150.1°0.1°
C13SC14C150.0°0.0°
C13SC14H5180.0°180.0°
SC13N11H35173.2°179.7°
N16C15C14S0.1°0.0°
N16C15C14H6180.0°180.0°
N16C15C14H5179.9°180.0°
SC14C15H5180.0°180.0°
SC14C15H6179.9°180.0°
H1NCH355.7°171.9°
H1NCH463.9°67.7°
H3CC4H2439.2°50.9°
H3CC4H25157.7°170.6°
H4CC4H2480.5°69.6°
H4CC4H2538.0°50.0°
H5C14C15H60.1°0.0°
H9C18H10H11120.0°119.9°
H12C20C21H130.1°0.1°
H15C25C26H1761.3°179.9°
H15C25C26H18178.7°60.0°
H16C25C26H1760.4°60.0°
H16C25C26H1859.7°179.9°
H21C38H22H23120.0°120.0°
H26C41C42H270.7°0.0°
H28C44C45H291.4°0.1°
H30C47H31H32119.9°120.1°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon