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PUY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NCAsing1.47Å1.44Å
NHN1sing1.01Å1.02Å
NHN2sing1.01Å1.02Å
CACBsing1.53Å1.65Å
CACsing1.51Å1.65Å
CAHAsing1.09Å1.12Å
CBCGsing1.51Å1.57Å
CBHB1sing1.09Å1.11Å
CBHB2sing1.09Å1.11Å
CGCD1doub1.38Å1.53ÅAromatic
CGCD2sing1.38Å1.51ÅAromatic
CD1CE1sing1.38Å1.43ÅAromatic
CD1HD1sing1.08Å1.10Å
CD2CE2doub1.38Å1.38ÅAromatic
CD2HD2sing1.08Å1.10Å
CE1CZdoub1.39Å1.47ÅAromatic
CE1HE1sing1.08Å1.10Å
CE2CZsing1.39Å1.54ÅAromatic
CE2HE2sing1.08Å1.10Å
CZOMsing1.36Å1.41Å
OCdoub1.21Å1.26Å
OMCMZsing1.43Å1.28Å
CMZHMZ1sing1.09Å1.11Å
CMZHMZ2sing1.09Å1.12Å
CMZHMZ3sing1.09Å1.11Å
CN3'sing1.35Å1.47Å
O5'C5'sing1.43Å1.47Å
O5'H5'sing0.97Å0.95Å
C5'C4'sing1.53Å1.55Å
C5'H5'1sing1.09Å1.11Å
C5'H5''sing1.09Å1.12Å
C4'O4'sing1.45Å1.46Å
C4'C3'sing1.54Å1.53Å
C4'H4'sing1.09Å1.12Å
O4'C1'sing1.44Å1.43Å
C1'N9sing1.46Å1.48Å
C1'C2'sing1.55Å1.56Å
C1'H1'sing1.09Å1.11Å
N9C4sing1.37Å1.40ÅAromatic
N9C8sing1.36Å1.38ÅAromatic
C4N3doub1.33Å1.36ÅAromatic
C4C5sing1.40Å1.39ÅAromatic
N3C2sing1.32Å1.30ÅAromatic
C2N1doub1.32Å1.37ÅAromatic
C2H2sing1.08Å1.10Å
N1C6sing1.33Å1.35ÅAromatic
C6N6sing1.38Å1.40Å
C6C5doub1.41Å1.44ÅAromatic
N6C9sing1.47Å1.36Å
N6C10sing1.47Å1.37Å
C9H91sing1.09Å1.12Å
C9H92sing1.09Å1.12Å
C9H93sing1.09Å1.12Å
C10H101sing1.09Å1.12Å
C10H102sing1.09Å1.12Å
C10H103sing1.09Å1.11Å
C5N7sing1.35Å1.39ÅAromatic
N7C8doub1.30Å1.30ÅAromatic
C8H8sing1.08Å1.10Å
C2'O2'sing1.43Å1.39Å
C2'C3'sing1.54Å1.52Å
C2'H2'sing1.09Å1.11Å
O2'H1sing0.97Å0.95Å
C3'N3'sing1.47Å1.45Å
C3'H3'sing1.09Å1.12Å
N3'H3sing0.97Å1.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CANHN1110.3°106.7°
CANHN2114.7°106.7°
NCACB114.7°109.5°
NCAC99.9°109.5°
NCAHA110.2°109.5°
HN1NHN2110.4°106.7°
CBCAC101.6°109.5°
CBCAHA108.6°109.5°
CACBCG103.2°109.5°
CACBHB1114.6°109.5°
CACBHB2114.6°109.5°
CCAHA121.8°109.5°
CACO123.5°120.0°
CACN3'115.2°120.0°
CGCBHB1114.6°109.5°
CGCBHB2114.6°109.5°
CBCGCD1116.3°120.0°
CBCGCD2120.6°119.9°
HB1CBHB295.9°109.4°
CD1CGCD2122.1°120.1°
CGCD1CE1117.3°120.0°
CGCD1HD1124.5°120.0°
CGCD2CE2119.2°120.1°
CGCD2HD2124.9°119.9°
CE1CD1HD1118.3°120.0°
CD1CE1CZ119.9°119.9°
CD1CE1HE1118.5°120.0°
CE2CD2HD2115.9°120.0°
CD2CE2CZ119.0°120.0°
CD2CE2HE2115.3°120.0°
CZCE1HE1121.6°120.0°
CE1CZCE2121.9°119.9°
CE1CZOM121.0°120.0°
CZCE2HE2125.7°120.0°
CE2CZOM117.1°120.1°
CZOMCMZ128.5°106.8°
OCN3'115.2°120.0°
OMCMZHMZ1105.6°109.5°
OMCMZHMZ2128.5°109.5°
OMCMZHMZ3105.6°109.5°
HMZ1CMZHMZ2105.5°109.5°
HMZ1CMZHMZ3103.7°109.4°
HMZ2CMZHMZ3105.6°109.4°
CN3'C3'118.8°120.0°
CN3'H3121.3°120.0°
C5'O5'H5'113.4°106.8°
O5'C5'C4'113.4°109.5°
O5'C5'H5'1110.8°109.5°
O5'C5'H5''110.8°109.5°
C4'C5'H5'1110.8°109.4°
C4'C5'H5''110.8°109.5°
C5'C4'O4'111.1°110.3°
C5'C4'C3'119.5°110.6°
C5'C4'H4'100.0°110.4°
H5'1C5'H5''99.5°109.5°
O4'C4'C3'106.3°104.7°
O4'C4'H4'114.8°110.4°
C4'O4'C1'108.0°105.4°
C3'C4'H4'105.4°110.3°
C4'C3'C2'102.2°104.2°
C4'C3'N3'99.6°110.5°
C4'C3'H3'126.1°110.6°
O4'C1'N9110.0°110.5°
O4'C1'C2'108.5°104.8°
O4'C1'H1'111.2°110.4°
N9C1'C2'113.3°110.4°
N9C1'H1'106.1°110.4°
C1'N9C4125.2°126.3°
C1'N9C8129.1°126.3°
C2'C1'H1'107.7°110.3°
C1'C2'O2'113.1°110.6°
C1'C2'C3'101.7°104.1°
C1'C2'H2'111.8°110.5°
C4N9C8105.6°107.4°
N9C4N3127.5°134.9°
N9C4C5105.3°106.0°
N9C8N7113.7°110.0°
N9C8H8125.6°125.0°
N3C4C5127.2°119.1°
C4N3C2110.8°120.6°
C4C5C6116.7°118.2°
C4C5N7110.6°107.2°
N3C2N1129.2°122.4°
N3C2H2112.4°118.8°
N1C2H2118.4°118.8°
C2N1C6119.7°121.2°
N1C6N6118.5°120.8°
N1C6C5116.2°118.4°
N6C6C5125.3°120.8°
C6N6C9121.4°106.7°
C6N6C10122.8°106.7°
C6C5N7132.7°134.6°
C9N6C10115.8°106.7°
N6C9H91108.0°109.4°
N6C9H92121.4°109.5°
N6C9H93107.9°109.5°
N6C10H101107.5°109.5°
N6C10H102122.8°109.4°
N6C10H103107.5°109.5°
H91C9H92107.9°109.5°
H91C9H93101.9°109.4°
H92C9H93108.0°109.5°
H101C10H102107.5°109.5°
H101C10H103102.3°109.5°
H102C10H103107.5°109.4°
C5N7C8104.7°109.4°
N7C8H8120.7°125.0°
O2'C2'C3'107.9°110.5°
O2'C2'H2'106.0°110.5°
C2'O2'H1113.1°106.8°
C3'C2'H2'116.6°110.5°
C2'C3'N3'124.3°110.5°
C2'C3'H3'102.3°110.5°
N3'C3'H3'104.8°110.4°
C3'N3'H3119.8°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CANHN1HN2127.8°113.8°
NCACBC106.7°120.0°
NCACBHA123.8°120.0°
NCACHA121.3°120.0°
NCACBCG77.4°65.0°
NCACBHB1157.3°175.0°
NCACBHB247.8°55.0°
NCACO16.3°20.0°
NCACN3'167.2°160.0°
HN1NCACB54.7°60.0°
HN1NCAC162.5°60.0°
HN1NCAHA68.2°180.0°
HN2NCACB180.0°53.8°
HN2NCAC72.2°173.8°
HN2NCAHA57.1°66.2°
CBCACHA120.7°120.0°
CACBCGHB1125.3°120.0°
CACBCGHB2125.3°120.0°
CACBHB1HB2120.5°120.0°
CACBCGCD187.3°90.0°
CACBCGCD2104.6°90.0°
CBCACO101.7°100.0°
CBCACN3'49.2°80.0°
CCACBCG175.9°175.0°
CCACBHB150.6°55.0°
CCACBHB258.9°65.0°
CACON3'150.9°180.0°
CACN3'C3'160.6°180.0°
CACN3'H319.4°0.1°
HACACBCG46.3°55.0°
HACACBHB179.0°65.0°
HACACBHB2171.6°175.0°
HACACO137.6°140.0°
HACACN3'71.5°40.0°
CGCBHB1HB2120.5°120.0°
CBCGCD1CD2168.0°179.9°
CBCGCD1CE1163.5°180.0°
CBCGCD1HD116.5°0.1°
CBCGCD2CE2159.7°179.7°
CBCGCD2HD220.3°0.1°
HB1CBCGCD138.0°150.0°
HB1CBCGCD2130.2°30.1°
HB2CBCGCD1147.4°30.1°
HB2CBCGCD220.7°150.0°
CGCD1CE1HD1180.0°179.9°
CD1CGCD2CE27.8°0.2°
CD1CGCD2HD2172.3°180.0°
CGCD1CE1CZ3.5°0.1°
CGCD1CE1HE1176.4°180.0°
CD2CGCD1CE14.5°0.1°
CD2CGCD1HD1175.5°180.0°
CGCD2CE2HD2180.0°179.8°
CGCD2CE2CZ2.7°0.5°
CGCD2CE2HE2177.3°180.0°
CD1CE1CZHE1180.0°180.0°
CD1CE1CZCE28.6°0.3°
CD1CE1CZOM172.7°180.0°
HD1CD1CE1CZ176.4°180.0°
HD1CD1CE1HE13.6°0.1°
CD2CE2CZCE15.3°0.5°
CD2CE2CZHE2180.0°179.5°
CD2CE2CZOM175.9°179.7°
HD2CD2CE2CZ177.3°179.7°
HD2CD2CE2HE22.7°0.2°
CE1CZCE2OM178.8°179.7°
CE1CZCE2HE2174.7°180.0°
CE1CZOMCMZ5.2°180.0°
HE1CE1CZCE2171.4°179.7°
HE1CE1CZOM7.3°0.0°
CE2CZOMCMZ176.1°0.3°
HE2CE2CZOM4.1°0.3°
CZOMCMZHMZ154.7°180.0°
CZOMCMZHMZ2180.0°60.0°
CZOMCMZHMZ354.7°60.0°
OCN3'C3'46.1°0.0°
OCN3'H3134.0°180.0°
OMCMZHMZ1HMZ2138.5°120.0°
OMCMZHMZ1HMZ3110.8°120.1°
OMCMZHMZ2HMZ3125.3°120.0°
HMZ1CMZHMZ2HMZ3109.4°119.9°
CN3'C3'C4'140.1°88.3°
CN3'C3'C2'107.8°156.9°
CN3'C3'H3180.0°179.9°
CN3'C3'H3'8.7°34.4°
O5'C5'C4'H5'1125.3°119.9°
O5'C5'C4'H5''125.3°120.0°
O5'C5'H5'1H5''116.6°120.0°
O5'C5'C4'O4'100.4°66.5°
O5'C5'C4'C3'23.8°178.1°
O5'C5'C4'H4'137.9°55.8°
H5'O5'C5'C4'180.0°180.0°
H5'O5'C5'H5'154.7°60.1°
H5'O5'C5'H5''54.7°60.0°
C4'C5'H5'1H5''116.6°120.0°
C5'C4'O4'C3'131.5°119.0°
C5'C4'O4'H4'112.5°122.3°
C5'C4'C3'H4'111.2°122.4°
C5'C4'O4'C1'153.1°159.4°
C5'C4'C3'C2'162.0°142.7°
C5'C4'C3'N3'69.6°98.6°
C5'C4'C3'H3'46.7°23.9°
H5'1C5'C4'O4'24.9°173.5°
H5'1C5'C4'C3'149.1°58.2°
H5'1C5'C4'H4'96.8°64.2°
H5''C5'C4'O4'134.3°53.5°
H5''C5'C4'C3'101.4°61.9°
H5''C5'C4'H4'12.7°175.8°
O4'C4'C3'H4'122.3°118.8°
C4'O4'C1'N9123.6°159.3°
C4'O4'C1'C2'0.8°40.4°
C4'O4'C1'H1'119.1°78.3°
O4'C4'C3'C2'35.4°23.9°
O4'C4'C3'N3'163.9°142.6°
O4'C4'C3'H3'79.8°94.9°
C3'C4'O4'C1'21.6°40.4°
C4'C3'C2'C1'34.0°0.0°
C4'C3'C2'O2'85.1°118.8°
C4'C3'C2'N3'110.7°118.7°
C4'C3'C2'H3'131.6°118.8°
C4'C3'C2'H2'155.8°118.6°
C4'C3'N3'H3'131.5°122.6°
C4'C3'N3'H339.9°91.6°
H4'C4'O4'C1'94.4°78.3°
H4'C4'C3'C2'86.8°94.9°
H4'C4'C3'N3'41.6°23.8°
H4'C4'C3'H3'157.9°146.3°
O4'C1'N9C2'121.6°115.4°
O4'C1'N9H1'120.4°122.4°
O4'C1'C2'H1'120.5°118.8°
O4'C1'N9C4129.6°159.9°
O4'C1'N9C851.9°20.4°
O4'C1'C2'O2'92.8°142.7°
O4'C1'C2'C3'22.6°24.0°
O4'C1'C2'H2'147.7°94.7°
N9C1'C2'H1'117.1°122.3°
C1'N9C4C8178.7°179.8°
C1'N9C4N32.7°0.7°
C1'N9C4C5178.9°179.9°
C1'N9C8N7178.5°180.0°
C1'N9C8H81.5°0.1°
N9C1'C2'O2'144.8°98.4°
N9C1'C2'C3'99.9°142.9°
N9C1'C2'H2'25.3°24.2°
C2'C1'N9C4108.8°84.7°
C2'C1'N9C869.7°95.0°
C1'C2'O2'C3'111.6°114.7°
C1'C2'O2'H2'122.8°122.6°
C1'C2'C3'H2'121.8°118.6°
C1'C2'O2'H1179.9°65.3°
C1'C2'C3'N3'144.7°118.7°
C1'C2'C3'H3'97.6°118.8°
H1'C1'N9C49.3°37.5°
H1'C1'N9C8172.3°142.7°
H1'C1'C2'O2'27.7°23.9°
H1'C1'C2'C3'143.1°94.9°
H1'C1'C2'H2'91.8°146.5°
N9C4N3C5178.1°179.1°
N9C4N3C2177.7°179.6°
N9C4C5C6179.6°179.8°
N9C4C5N71.4°0.4°
C4N9C8N72.8°0.2°
C4N9C8H8177.2°179.7°
C8N9C4N3176.1°179.5°
C8N9C4C52.4°0.3°
N9C8N7C51.9°0.0°
N9C8N7H8180.0°179.9°
C4N3C2N12.4°0.3°
C4N3C2H2177.6°179.7°
N3C4C5C61.9°0.5°
N3C4C5N7177.1°179.7°
C5C4N3C24.1°0.5°
C4C5C6N12.4°0.3°
C4C5C6N6177.0°179.8°
C4C5C6N7178.7°179.8°
C4C5N7C80.3°0.2°
N3C2N1H2180.0°180.0°
N3C2N1C61.6°0.0°
C2N1C6N6175.4°180.0°
C2N1C6C54.0°0.0°
H2C2N1C6178.4°180.0°
N1C6N6C5179.3°180.0°
N1C6N6C9179.7°0.0°
N1C6N6C103.0°113.8°
N1C6C5N7178.9°180.0°
C6N6C9C10177.5°113.8°
C6N6C9H9154.7°180.0°
C6N6C9H92180.0°60.0°
C6N6C9H9354.7°60.0°
C6N6C10H10154.8°60.0°
C6N6C10H102180.0°180.0°
C6N6C10H10354.7°60.0°
N6C6C5N71.7°0.0°
C5C6N6C90.9°180.0°
C5C6N6C10176.4°66.2°
C6C5N7C8178.5°180.0°
N6C9H91H92132.9°120.0°
N6C9H91H93113.5°120.0°
N6C9H92H93125.3°120.1°
C9N6C10H101127.8°173.8°
C9N6C10H1022.6°66.2°
C9N6C10H103122.7°53.7°
C10N6C9H91122.7°66.2°
C10N6C9H922.5°173.8°
C10N6C9H93127.8°53.7°
N6C10H101H102134.0°120.0°
N6C10H101H103113.0°120.0°
N6C10H102H103125.3°120.0°
H91C9H92H93109.5°120.0°
H101C10H102H103109.5°120.0°
C5N7C8H8178.0°180.0°
O2'C2'C3'H2'119.1°122.6°
O2'C2'C3'N3'25.6°0.1°
O2'C2'C3'H3'143.3°122.4°
C3'C2'O2'H168.5°180.0°
C2'C3'N3'H3'116.5°122.5°
C2'C3'N3'H372.2°23.2°
H2'C2'O2'H157.2°57.4°
H2'C2'C3'N3'93.5°122.7°
H2'C2'C3'H3'24.2°0.2°
H3'C3'N3'H3171.3°145.7°

222415

PDB entries from 2024-07-10

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