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PU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.48Å1.49Å
POP2sing1.61Å1.50Å
POP3sing1.61Å1.60Å
PNsing1.68Å1.51Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
NCAsing1.47Å1.41Å
NHN1sing1.01Å1.02Å
CACsing1.51Å1.58Å
CACBsing1.53Å1.60Å
CAHAsing1.09Å1.11Å
COdoub1.21Å1.26Å
CN3'sing1.35Å1.32Å
CBCGsing1.51Å1.60Å
CBHB1sing1.09Å1.12Å
CBHB2sing1.09Å1.11Å
CGCD1doub1.38Å1.40ÅAromatic
CGCD2sing1.38Å1.40ÅAromatic
CD1CE1sing1.38Å1.65ÅAromatic
CD1HD1sing1.08Å1.10Å
CD2CE2doub1.38Å1.62ÅAromatic
CD2HD2sing1.08Å1.10Å
CE1CZdoub1.39Å1.25ÅAromatic
CE1HE1sing1.08Å1.10Å
CE2CZsing1.39Å1.36ÅAromatic
CE2HE2sing1.08Å1.10Å
CZOCsing1.36Å1.31Å
OCCMsing1.43Å1.51Å
CMHM1sing1.09Å1.12Å
CMHM2sing1.09Å1.11Å
CMHM3sing1.09Å1.11Å
O5'C5'sing1.43Å1.45Å
O5'HO5'sing0.97Å0.95Å
C5'C4'sing1.53Å1.51Å
C5'H5'sing1.09Å1.12Å
C5'H5''sing1.09Å1.11Å
C4'O4'sing1.45Å1.45Å
C4'C3'sing1.54Å1.51Å
C4'H4'sing1.09Å1.12Å
O4'C1'sing1.44Å1.41Å
C3'N3'sing1.46Å1.47Å
C3'C2'sing1.54Å1.52Å
C3'H3'sing1.09Å1.12Å
N3'HN'3sing0.97Å1.02Å
C2'O2'sing1.43Å1.42Å
C2'C1'sing1.54Å1.54Å
C2'H2'sing1.09Å1.11Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.47Å1.46Å
C1'H1'sing1.09Å1.11Å
N9C8sing1.36Å1.38ÅAromatic
N9C4sing1.37Å1.37ÅAromatic
C8N7doub1.30Å1.31ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.40ÅAromatic
C5C6doub1.41Å1.39ÅAromatic
C5C4sing1.40Å1.38ÅAromatic
C6N6sing1.38Å1.33Å
C6N1sing1.33Å1.37ÅAromatic
N6C9sing1.47Å1.46Å
N6C10sing1.47Å1.43Å
C9H91sing1.09Å1.11Å
C9H92sing1.09Å1.12Å
C9H93sing1.09Å1.12Å
C10H101sing1.09Å1.11Å
C10H102sing1.09Å1.11Å
C10H103sing1.09Å1.11Å
N1C2doub1.32Å1.34ÅAromatic
C2N3sing1.32Å1.32ÅAromatic
C2H2sing1.08Å1.10Å
C4N3doub1.33Å1.36ÅAromatic
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2118.9°109.5°
OP1POP3105.0°109.5°
OP1PN104.8°109.5°
OP2POP3120.2°109.5°
OP2PN105.4°109.4°
POP2HOP2119.0°106.8°
OP3PN99.8°109.5°
POP3HOP3105.0°106.9°
PNCA115.2°106.7°
PNHN1110.1°106.7°
CANHN1110.1°106.7°
NCAC118.5°109.5°
NCACB96.5°109.5°
NCAHA111.0°109.5°
CCACB104.9°109.5°
CCAHA103.5°109.5°
CACO119.3°120.0°
CACN3'115.5°120.0°
CBCAHA123.4°109.5°
CACBCG111.8°109.5°
CACBHB1111.3°109.5°
CACBHB2111.4°109.5°
OCN3'125.2°120.0°
CN3'C3'122.9°119.9°
CN3'HN'3113.1°120.0°
CGCBHB1111.3°109.5°
CGCBHB2111.3°109.5°
CBCGCD1127.0°120.0°
CBCGCD2121.5°119.9°
HB1CBHB299.1°109.5°
CD1CGCD2111.2°120.1°
CGCD1CE1123.9°120.1°
CGCD1HD1109.1°120.0°
CGCD2CE2124.3°120.0°
CGCD2HD2110.1°120.0°
CE1CD1HD1127.0°120.0°
CD1CE1CZ119.3°119.9°
CD1CE1HE1133.7°120.0°
CE2CD2HD2125.6°120.0°
CD2CE2CZ118.0°120.0°
CD2CE2HE2129.2°120.0°
CZCE1HE1107.0°120.0°
CE1CZCE2122.8°119.9°
CE1CZOC127.4°120.0°
CZCE2HE2112.9°120.0°
CE2CZOC109.7°120.1°
CZOCCM115.8°106.8°
OCCMHM1115.8°109.4°
OCCMHM2109.9°109.5°
OCCMHM3109.9°109.5°
HM1CMHM2109.8°109.4°
HM1CMHM3109.9°109.5°
HM2CMHM3100.4°109.5°
C5'O5'HO5'109.6°106.8°
O5'C5'C4'109.6°109.5°
O5'C5'H5'112.2°109.5°
O5'C5'H5''112.2°109.4°
C4'C5'H5'112.2°109.5°
C4'C5'H5''112.2°109.5°
C5'C4'O4'110.7°110.4°
C5'C4'C3'115.0°110.7°
C5'C4'H4'103.7°110.4°
H5'C5'H5''98.2°109.5°
O4'C4'C3'106.1°104.6°
O4'C4'H4'113.0°110.3°
C4'O4'C1'110.0°105.4°
C3'C4'H4'108.5°110.3°
C4'C3'N3'113.7°110.5°
C4'C3'C2'102.0°104.2°
C4'C3'H3'112.4°110.5°
O4'C1'C2'106.6°104.8°
O4'C1'N9105.8°110.5°
O4'C1'H1'118.2°110.4°
N3'C3'C2'111.4°110.5°
N3'C3'H3'103.1°110.5°
C3'N3'HN'3124.1°120.1°
C2'C3'H3'114.7°110.5°
C3'C2'O2'81.9°110.5°
C3'C2'C1'102.5°104.1°
C3'C2'H2'130.1°110.5°
O2'C2'C1'113.4°110.7°
O2'C2'H2'121.3°110.4°
C2'O2'HO2'81.9°106.8°
C1'C2'H2'105.7°110.5°
C2'C1'N9120.4°110.4°
C2'C1'H1'102.8°110.4°
N9C1'H1'103.7°110.3°
C1'N9C8124.5°126.3°
C1'N9C4129.8°126.3°
C8N9C4105.6°107.4°
N9C8N7114.0°110.0°
N9C8H8125.2°125.1°
N9C4C5106.5°106.0°
N9C4N3127.5°134.9°
N7C8H8120.9°124.9°
C8N7C5103.8°109.4°
N7C5C6132.8°134.6°
N7C5C4110.1°107.2°
C6C5C4117.1°118.2°
C5C6N6124.1°120.8°
C5C6N1118.8°118.4°
C5C4N3126.0°119.1°
N6C6N1117.1°120.8°
C6N6C9120.0°106.7°
C6N6C10123.3°106.7°
C6N1C2117.1°121.2°
C9N6C10116.7°106.7°
N6C9H91120.1°109.5°
N6C9H92108.5°109.5°
N6C9H93108.5°109.5°
N6C10H101123.2°109.4°
N6C10H102107.3°109.4°
N6C10H103107.3°109.5°
H91C9H92108.4°109.5°
H91C9H93108.4°109.5°
H92C9H93101.5°109.4°
H101C10H102107.4°109.5°
H101C10H103107.4°109.6°
H102C10H103102.4°109.5°
N1C2N3129.9°122.4°
N1C2H2116.4°118.8°
N3C2H2113.7°118.7°
C2N3C4111.2°120.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2OP3131.5°120.0°
OP1POP2N117.0°120.0°
OP1POP3N108.4°120.0°
OP1POP2HOP2180.0°60.0°
OP1POP3HOP3179.9°180.0°
OP1PNCA25.3°180.0°
OP1PNHN1150.6°66.2°
OP2POP3N114.4°119.9°
OP2POP3HOP342.7°59.9°
OP2PNCA151.5°60.0°
OP2PNHN183.2°173.8°
OP3POP2HOP248.4°60.1°
OP3PNCA83.2°59.9°
OP3PNHN142.0°53.8°
NPOP2HOP263.0°180.0°
NPOP3HOP371.7°60.0°
PNCAHN1125.3°113.8°
PNCAC81.3°120.0°
PNCACB167.8°120.0°
PNCAHA38.2°0.0°
NCACCB106.2°120.0°
NCACHA123.3°120.0°
NCACBHA120.5°120.0°
NCACO40.0°30.0°
NCACN3'139.2°150.0°
NCACBCG71.2°60.0°
NCACBHB154.0°180.0°
NCACBHB2163.5°60.0°
HN1NCAC44.0°6.2°
HN1NCACB66.9°126.2°
HN1NCAHA163.5°113.8°
CCACBHA117.7°120.0°
CACON3'179.2°180.0°
CCACBCG166.9°180.0°
CCACBHB167.9°60.1°
CCACBHB241.7°60.0°
CACN3'C3'178.0°180.0°
CACN3'HN'32.0°0.1°
CBCACO146.2°90.0°
CBCACN3'33.1°90.0°
CACBCGHB1125.2°120.0°
CACBCGHB2125.3°120.0°
CACBHB1HB2117.3°120.0°
CACBCGCD1110.3°90.0°
CACBCGCD276.8°90.0°
HACACO83.3°150.0°
HACACN3'97.5°30.0°
HACACBCG49.2°60.0°
HACACBHB1174.5°60.0°
HACACBHB276.0°180.0°
OCN3'C3'2.8°0.0°
OCN3'HN'3177.2°180.0°
CN3'C3'C4'156.4°93.3°
CN3'C3'HN'3180.0°179.9°
CN3'C3'C2'89.1°151.9°
CN3'C3'H3'34.4°29.3°
CGCBHB1HB2117.2°120.0°
CBCGCD1CD2173.5°180.0°
CBCGCD1CE1177.6°180.0°
CBCGCD1HD12.4°0.0°
CBCGCD2CE2177.7°179.8°
CBCGCD2HD22.4°0.0°
HB1CBCGCD1124.4°150.0°
HB1CBCGCD248.5°30.0°
HB2CBCGCD114.9°30.0°
HB2CBCGCD2158.0°150.0°
CGCD1CE1HD1180.0°179.9°
CD1CGCD2CE23.8°0.2°
CD1CGCD2HD2176.3°180.0°
CGCD1CE1CZ6.6°0.0°
CGCD1CE1HE1173.5°180.0°
CD2CGCD1CE14.1°0.0°
CD2CGCD1HD1175.9°180.0°
CGCD2CE2HD2180.0°179.8°
CGCD2CE2CZ5.4°0.5°
CGCD2CE2HE2174.6°180.0°
CD1CE1CZHE1180.0°180.0°
CD1CE1CZCE28.1°0.3°
CD1CE1CZOC176.2°180.0°
HD1CD1CE1CZ173.4°180.0°
HD1CD1CE1HE16.6°0.1°
CD2CE2CZCE17.7°0.5°
CD2CE2CZHE2180.0°179.5°
CD2CE2CZOC176.0°179.8°
HD2CD2CE2CZ174.6°179.7°
HD2CD2CE2HE25.4°0.2°
CE1CZCE2OC176.3°179.7°
CE1CZCE2HE2172.3°180.0°
CE1CZOCCM4.6°180.0°
HE1CE1CZCE2171.9°179.7°
HE1CE1CZOC3.8°0.0°
CE2CZOCCM179.3°0.3°
HE2CE2CZOC4.0°0.3°
CZOCCMHM1180.0°180.0°
CZOCCMHM254.8°60.1°
CZOCCMHM354.8°60.0°
OCCMHM1HM2125.2°119.9°
OCCMHM1HM3125.3°120.0°
OCCMHM2HM3115.7°120.0°
HM1CMHM2HM3115.7°120.1°
O5'C5'C4'H5'125.2°120.0°
O5'C5'C4'H5''125.3°119.9°
O5'C5'H5'H5''118.1°119.9°
O5'C5'C4'O4'106.1°61.5°
O5'C5'C4'C3'14.1°176.8°
O5'C5'C4'H4'132.4°60.8°
HO5'O5'C5'C4'180.0°180.0°
HO5'O5'C5'H5'54.8°59.9°
HO5'O5'C5'H5''54.7°60.0°
C4'C5'H5'H5''118.1°120.0°
C5'C4'O4'C3'125.4°119.1°
C5'C4'O4'H4'115.8°122.3°
C5'C4'C3'H4'115.5°122.5°
C5'C4'O4'C1'143.6°159.5°
C5'C4'C3'N3'84.2°98.6°
C5'C4'C3'C2'155.8°142.7°
C5'C4'C3'H3'32.5°24.0°
H5'C5'C4'O4'128.7°178.5°
H5'C5'C4'C3'111.1°63.1°
H5'C5'C4'H4'7.2°59.2°
H5''C5'C4'O4'19.2°58.5°
H5''C5'C4'C3'139.4°56.9°
H5''C5'C4'H4'102.3°179.3°
O4'C4'C3'H4'121.7°118.7°
O4'C4'C3'N3'153.0°142.5°
O4'C4'C3'C2'33.0°23.8°
O4'C4'C3'H3'90.3°94.9°
C4'O4'C1'C2'4.5°40.4°
C4'O4'C1'N9124.9°159.3°
C4'O4'C1'H1'119.5°78.4°
C3'C4'O4'C1'18.2°40.4°
C4'C3'N3'C2'114.5°114.8°
C4'C3'N3'H3'122.0°122.6°
C4'C3'C2'H3'121.8°118.7°
C4'C3'N3'HN'323.6°86.8°
C4'C3'C2'O2'77.8°118.9°
C4'C3'C2'C1'34.4°0.0°
C4'C3'C2'H2'157.8°118.6°
H4'C4'O4'C1'100.6°78.2°
H4'C4'C3'N3'31.3°23.8°
H4'C4'C3'C2'88.7°94.8°
H4'C4'C3'H3'148.0°146.4°
O4'C1'C2'C3'24.9°24.0°
O4'C1'C2'O2'61.6°142.7°
O4'C1'C2'N9120.4°118.9°
O4'C1'C2'H1'125.0°118.9°
O4'C1'C2'H2'163.3°94.7°
O4'C1'N9H1'125.1°122.3°
O4'C1'N9C848.6°25.4°
O4'C1'N9C4127.1°154.9°
N3'C3'C2'H3'116.6°122.6°
N3'C3'C2'O2'43.8°0.2°
N3'C3'C2'C1'156.0°118.6°
N3'C3'C2'H2'80.6°122.7°
C2'C3'N3'HN'391.0°28.0°
C3'C2'O2'C1'100.2°114.8°
C3'C2'O2'H2'132.4°122.6°
C3'C2'C1'H2'138.4°118.6°
C3'C2'O2'HO2'180.0°180.0°
C3'C2'C1'N995.5°142.9°
C3'C2'C1'H1'149.9°94.9°
H3'C3'N3'HN'3145.6°150.6°
H3'C3'C2'O2'160.4°122.4°
H3'C3'C2'C1'87.3°118.8°
H3'C3'C2'H2'36.0°0.2°
O2'C2'C1'H2'135.1°122.6°
O2'C2'C1'N9178.0°98.3°
O2'C2'C1'H1'63.4°23.9°
C1'C2'O2'HO2'79.9°65.3°
C2'C1'N9H1'114.1°122.2°
C2'C1'N9C872.2°90.0°
C2'C1'N9C4112.2°89.7°
H2'C2'O2'HO2'47.5°57.4°
H2'C2'C1'N942.9°24.3°
H2'C2'C1'H1'71.7°146.5°
C1'N9C8C4176.6°179.7°
C1'N9C8N7179.0°180.0°
C1'N9C8H81.0°0.0°
C1'N9C4C5178.2°179.8°
C1'N9C4N33.4°0.8°
H1'C1'N9C8173.7°147.8°
H1'C1'N9C42.0°32.6°
N9C8N7H8180.0°180.0°
N9C8N7C51.7°0.0°
C8N9C4C51.9°0.4°
C8N9C4N3179.7°179.5°
C4N9C8N72.4°0.3°
C4N9C8H8177.6°179.8°
N9C4C5N71.0°0.4°
N9C4C5C6178.5°179.8°
N9C4C5N3178.4°179.2°
N9C4N3C2178.3°179.6°
C8N7C5C6179.8°180.0°
C8N7C5C40.4°0.3°
H8C8N7C5178.3°180.0°
N7C5C6C4179.4°179.7°
N7C5C6N61.5°0.0°
N7C5C6N1179.1°179.9°
N7C5C4N3179.3°179.7°
C5C6N6N1179.4°179.9°
C5C6N6C91.8°180.0°
C5C6N6C10179.9°66.3°
C5C6N1C20.5°0.1°
C6C5C4N30.2°0.6°
C4C5C6N6179.2°179.7°
C4C5C6N10.3°0.2°
C5C4N3C20.3°0.6°
C6N6C9C10178.2°113.8°
C6N6C9H91180.0°179.9°
C6N6C9H9254.7°60.0°
C6N6C9H9354.7°60.0°
C6N6C10H101180.0°179.9°
C6N6C10H10254.7°60.0°
C6N6C10H10354.7°60.0°
N6C6N1C2179.0°180.0°
N1C6N6C9178.8°0.1°
N1C6N6C100.7°113.8°
C6N1C2N30.7°0.1°
C6N1C2H2179.3°179.9°
N6C9H91H92125.3°120.0°
N6C9H91H93125.3°120.0°
N6C9H92H93114.1°120.0°
C9N6C10H1011.9°66.2°
C9N6C10H102123.4°53.8°
C9N6C10H103127.1°173.7°
C10N6C9H911.8°66.2°
C10N6C9H92127.1°173.8°
C10N6C9H93123.5°53.8°
N6C10H101H102125.2°119.9°
N6C10H101H103125.2°120.0°
N6C10H102H103112.8°120.0°
H91C9H92H93114.0°120.0°
H101C10H102H103112.9°120.1°
N1C2N3H2180.0°179.9°
N1C2N3C40.5°0.3°
H2C2N3C4179.5°179.7°

217705

PDB entries from 2024-03-27

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