PTU
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | C | sing | 1.37Å | 1.48Å | |
N1 | HN11 | sing | 0.97Å | 1.02Å | |
N1 | HN12 | sing | 0.97Å | 1.02Å | |
C | S | sing | 1.76Å | 1.80Å | |
C | N2 | doub | 1.31Å | 1.35Å | |
S | C1' | sing | 1.81Å | 1.81Å | |
N2 | C1 | sing | 1.37Å | 1.36Å | |
C1 | C2 | doub | 1.40Å | 1.43Å | Aromatic |
C1 | C6 | sing | 1.40Å | 1.43Å | Aromatic |
C2 | C3 | sing | 1.38Å | 1.42Å | Aromatic |
C2 | H21 | sing | 1.08Å | 1.10Å | |
C3 | C4 | doub | 1.38Å | 1.42Å | Aromatic |
C3 | H31 | sing | 1.08Å | 1.10Å | |
C4 | C5 | sing | 1.38Å | 1.42Å | Aromatic |
C4 | H41 | sing | 1.08Å | 1.10Å | |
C5 | C6 | doub | 1.38Å | 1.42Å | Aromatic |
C5 | H51 | sing | 1.08Å | 1.10Å | |
C6 | H61 | sing | 1.08Å | 1.10Å | |
C1' | C2' | sing | 1.53Å | 1.52Å | |
C1' | H1'1 | sing | 1.09Å | 1.11Å | |
C1' | H1'2 | sing | 1.09Å | 1.12Å | |
C2' | H2'1 | sing | 1.09Å | 1.12Å | |
C2' | H2'2 | sing | 1.09Å | 1.12Å | |
C2' | H2'3 | sing | 1.09Å | 1.11Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C | N1 | HN11 | 118.8° | 120.0° |
C | N1 | HN12 | 108.9° | 120.0° |
N1 | C | S | 118.8° | 120.0° |
N1 | C | N2 | 116.7° | 120.0° |
HN11 | N1 | HN12 | 108.8° | 120.0° |
S | C | N2 | 124.5° | 120.0° |
C | S | C1' | 109.9° | 100.0° |
C | N2 | C1 | 138.2° | 120.0° |
S | C1' | C2' | 109.3° | 109.5° |
S | C1' | H1'1 | 112.3° | 109.5° |
S | C1' | H1'2 | 112.2° | 109.5° |
N2 | C1 | C2 | 117.1° | 120.2° |
N2 | C1 | C6 | 124.4° | 120.1° |
C2 | C1 | C6 | 118.5° | 119.7° |
C1 | C2 | C3 | 120.7° | 119.9° |
C1 | C2 | H21 | 120.0° | 120.0° |
C1 | C6 | C5 | 120.6° | 119.9° |
C1 | C6 | H61 | 120.3° | 120.0° |
C3 | C2 | H21 | 119.4° | 120.1° |
C2 | C3 | C4 | 119.9° | 120.2° |
C2 | C3 | H31 | 120.2° | 119.9° |
C4 | C3 | H31 | 119.9° | 119.9° |
C3 | C4 | C5 | 120.0° | 120.2° |
C3 | C4 | H41 | 120.1° | 119.9° |
C5 | C4 | H41 | 119.9° | 119.8° |
C4 | C5 | C6 | 120.3° | 120.2° |
C4 | C5 | H51 | 119.8° | 119.9° |
C6 | C5 | H51 | 120.0° | 119.9° |
C5 | C6 | H61 | 119.2° | 120.1° |
C2' | C1' | H1'1 | 112.3° | 109.5° |
C2' | C1' | H1'2 | 112.3° | 109.5° |
C1' | C2' | H2'1 | 109.3° | 109.5° |
C1' | C2' | H2'2 | 112.2° | 109.5° |
C1' | C2' | H2'3 | 112.3° | 109.5° |
H1'1 | C1' | H1'2 | 98.2° | 109.4° |
H2'1 | C2' | H2'2 | 112.2° | 109.4° |
H2'1 | C2' | H2'3 | 112.3° | 109.5° |
H2'2 | C2' | H2'3 | 98.2° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C | N1 | HN11 | HN12 | 125.2° | 180.0° |
N1 | C | S | N2 | 180.0° | 180.0° |
N1 | C | S | C1' | 138.5° | 180.0° |
N1 | C | N2 | C1 | 159.3° | 6.2° |
HN11 | N1 | C | S | 180.0° | 8.0° |
HN11 | N1 | C | N2 | 0.1° | 171.9° |
HN12 | N1 | C | S | 54.8° | 172.0° |
HN12 | N1 | C | N2 | 125.3° | 8.1° |
S | C | N2 | C1 | 20.7° | 173.8° |
C | S | C1' | C2' | 136.4° | 180.0° |
C | S | C1' | H1'1 | 98.3° | 59.9° |
C | S | C1' | H1'2 | 11.2° | 60.0° |
N2 | C | S | C1' | 41.4° | 0.0° |
C | N2 | C1 | C2 | 151.7° | 123.5° |
C | N2 | C1 | C6 | 28.2° | 56.9° |
S | C1' | C2' | H1'1 | 125.3° | 120.1° |
S | C1' | C2' | H1'2 | 125.2° | 120.0° |
S | C1' | H1'1 | H1'2 | 118.2° | 120.0° |
S | C1' | C2' | H2'1 | 180.0° | 180.0° |
S | C1' | C2' | H2'2 | 54.8° | 60.0° |
S | C1' | C2' | H2'3 | 54.7° | 60.0° |
N2 | C1 | C2 | C6 | 179.9° | 179.6° |
N2 | C1 | C2 | C3 | 179.7° | 179.9° |
N2 | C1 | C2 | H21 | 0.3° | 0.1° |
N2 | C1 | C6 | C5 | 179.7° | 179.8° |
N2 | C1 | C6 | H61 | 0.3° | 0.4° |
C1 | C2 | C3 | H21 | 180.0° | 180.0° |
C1 | C2 | C3 | C4 | 0.3° | 0.0° |
C1 | C2 | C3 | H31 | 179.7° | 180.0° |
C2 | C1 | C6 | C5 | 0.4° | 0.5° |
C2 | C1 | C6 | H61 | 179.6° | 180.0° |
C6 | C1 | C2 | C3 | 0.4° | 0.3° |
C6 | C1 | C2 | H21 | 179.6° | 179.7° |
C1 | C6 | C5 | C4 | 0.2° | 0.5° |
C1 | C6 | C5 | H61 | 180.0° | 179.5° |
C1 | C6 | C5 | H51 | 179.8° | 179.7° |
C2 | C3 | C4 | H31 | 180.0° | 180.0° |
C2 | C3 | C4 | C5 | 0.1° | 0.1° |
C2 | C3 | C4 | H41 | 180.0° | 180.0° |
H21 | C2 | C3 | C4 | 179.8° | 180.0° |
H21 | C2 | C3 | H31 | 0.3° | 0.0° |
C3 | C4 | C5 | H41 | 180.0° | 179.9° |
C3 | C4 | C5 | C6 | 0.0° | 0.2° |
C3 | C4 | C5 | H51 | 179.9° | 180.0° |
H31 | C3 | C4 | C5 | 179.9° | 180.0° |
H31 | C3 | C4 | H41 | 0.1° | 0.0° |
C4 | C5 | C6 | H51 | 180.0° | 179.8° |
C4 | C5 | C6 | H61 | 179.8° | 180.0° |
H41 | C4 | C5 | C6 | 180.0° | 179.8° |
H41 | C4 | C5 | H51 | 0.0° | 0.1° |
H51 | C5 | C6 | H61 | 0.2° | 0.2° |
C2' | C1' | H1'1 | H1'2 | 118.2° | 120.0° |
C1' | C2' | H2'1 | H2'2 | 125.2° | 120.0° |
C1' | C2' | H2'1 | H2'3 | 125.3° | 120.0° |
C1' | C2' | H2'2 | H2'3 | 118.2° | 120.0° |
H1'1 | C1' | C2' | H2'1 | 54.8° | 59.9° |
H1'1 | C1' | C2' | H2'2 | 180.0° | 60.1° |
H1'1 | C1' | C2' | H2'3 | 70.5° | 180.0° |
H1'2 | C1' | C2' | H2'1 | 54.7° | 60.0° |
H1'2 | C1' | C2' | H2'2 | 70.4° | 180.0° |
H1'2 | C1' | C2' | H2'3 | 180.0° | 60.0° |
H2'1 | C2' | H2'2 | H2'3 | 118.2° | 120.0° |