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PTJ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2'C2'sing1.43Å1.43Å
O2PPdoub1.48Å1.48Å
C2'C3'sing1.55Å1.52Å
C2'C1'sing1.55Å1.52Å
C8N7doub1.30Å1.33ÅAromatic
C8N9sing1.36Å1.33ÅAromatic
N7C5sing1.36Å1.33ÅAromatic
C15C13sing1.53Å1.53Å
C3'O3'sing1.43Å1.44Å
C3'C4'sing1.54Å1.52Å
N9C1'sing1.46Å1.48Å
N9C4sing1.37Å1.33ÅAromatic
O12C11doub1.21Å1.23Å
PO1Psing1.61Å1.48Å
PO5'sing1.61Å1.61Å
PO11sing1.61Å1.61Å
N6C6sing1.38Å1.33Å
C5C4doub1.40Å1.33ÅAromatic
C5C6sing1.41Å1.33ÅAromatic
C1'O4'sing1.44Å1.43Å
C11O11sing1.34Å1.36Å
C11C12sing1.51Å1.53Å
C14C13sing1.53Å1.53Å
O5'C5'sing1.43Å1.43Å
C4N3sing1.33Å1.34ÅAromatic
C5'C4'sing1.53Å1.53Å
C6N1doub1.33Å1.34ÅAromatic
C13C12sing1.53Å1.53Å
C13C16sing1.53Å1.53Å
C4'O4'sing1.44Å1.44Å
C12O13sing1.43Å1.43Å
C16O14sing1.43Å1.43Å
N3C2doub1.32Å1.40ÅAromatic
O14P1sing1.61Å1.61Å
N1C2sing1.32Å1.40ÅAromatic
O15P1doub1.48Å1.48Å
O17P1sing1.61Å1.48Å
P1O16sing1.61Å1.48Å
O16H1sing0.97Å0.95Å
O17H2sing0.97Å0.95Å
C16H3sing1.09Å1.10Å
C16H4sing1.09Å1.10Å
C14H5sing1.09Å1.10Å
C14H6sing1.09Å1.10Å
C14H7sing1.09Å1.10Å
C15H8sing1.09Å1.10Å
C15H9sing1.09Å1.10Å
C15H10sing1.09Å1.10Å
C12H11sing1.09Å1.10Å
O13H12sing0.97Å0.95Å
O1PH13sing0.97Å0.95Å
C5'H14sing1.09Å1.10Å
C5'H15sing1.09Å1.10Å
C4'H16sing1.09Å1.10Å
C3'H17sing1.09Å1.10Å
O3'H18sing0.97Å0.95Å
C2'H19sing1.09Å1.10Å
O2'H20sing0.97Å0.95Å
C1'H21sing1.09Å1.10Å
C8H22sing1.08Å1.08Å
C2H23sing1.08Å1.08Å
N6H24sing0.97Å1.00Å
N6H25sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2'C2'C3'109.1°110.9°
O2'C2'C1'108.2°111.0°
O2'C2'H19113.8°110.8°
C2'O2'H20109.5°114.1°
O2PPO1P118.9°109.4°
O2PPO5'108.5°109.5°
O2PPO11108.0°109.5°
C3'C2'C1'99.8°102.1°
C2'C3'O3'110.7°110.4°
C2'C3'C4'102.8°104.2°
C2'C3'H17110.5°110.6°
C3'C2'H19112.5°110.9°
C2'C1'N9112.8°110.6°
C2'C1'O4'103.5°103.5°
C1'C2'H19112.5°110.9°
C2'C1'H21109.6°110.6°
N7C8N9108.0°110.0°
C8N7C5108.1°109.4°
N7C8H22126.0°125.0°
C8N9C1'125.0°126.3°
C8N9C4108.0°107.5°
N9C8H22126.0°125.0°
N7C5C4107.9°107.1°
N7C5C6131.3°134.6°
C15C13C14109.4°109.4°
C15C13C12109.7°109.5°
C15C13C16109.6°109.5°
C13C15H8109.5°109.5°
C13C15H9109.5°109.5°
C13C15H10109.5°109.5°
O3'C3'C4'110.4°110.5°
O3'C3'H17111.7°110.4°
C3'O3'H18109.5°114.0°
C3'C4'C5'110.1°109.9°
C3'C4'O4'107.1°107.3°
C3'C4'H16110.5°110.0°
C4'C3'H17110.4°110.5°
C1'N9C4125.3°126.2°
N9C1'O4'110.2°110.6°
N9C1'H21110.0°110.7°
N9C4C5108.0°106.0°
N9C4N3131.1°134.9°
O12C11O11124.0°120.0°
O12C11C12120.7°120.0°
O1PPO5'109.0°109.4°
O1PPO11109.4°109.5°
PO1PH13109.5°114.0°
O5'PO11101.6°109.5°
PO5'C5'119.3°123.0°
PO11C11121.3°117.0°
N6C6C5116.5°120.8°
N6C6N1121.4°120.8°
C6N6H24109.5°120.0°
C6N6H25109.5°120.0°
C4C5C6120.8°118.2°
C5C4N3120.9°119.1°
C5C6N1121.9°118.4°
C1'O4'C4'106.8°107.0°
O4'C1'H21110.7°110.6°
O11C11C12115.0°120.0°
C11C12C13110.3°109.5°
C11C12O13109.7°109.5°
C11C12H11108.7°109.4°
C14C13C12109.7°109.4°
C14C13C16108.9°109.5°
C13C14H5109.5°109.4°
C13C14H6109.5°109.5°
C13C14H7109.5°109.5°
O5'C5'C4'109.6°109.5°
O5'C5'H14109.4°109.5°
O5'C5'H15109.5°109.5°
C4N3C2119.7°120.6°
C5'C4'O4'107.1°109.9°
C4'C5'H14109.5°109.4°
C4'C5'H15109.5°109.5°
C5'C4'H16110.3°109.8°
C6N1C2118.8°121.2°
C12C13C16109.6°109.5°
C13C12O13109.3°109.5°
C13C12H11108.7°109.4°
C13C16O14109.6°109.5°
C13C16H3109.4°109.5°
C13C16H4109.4°109.5°
O4'C4'H16111.7°109.9°
O13C12H11110.1°109.5°
C12O13H12109.5°114.0°
C16O14P1120.8°123.0°
O14C16H3109.4°109.5°
O14C16H4109.4°109.5°
N3C2N1117.9°122.5°
N3C2H23121.1°118.7°
O14P1O15103.6°109.5°
O14P1O17104.5°109.5°
O14P1O16104.1°109.5°
N1C2H23121.0°118.8°
O15P1O17114.7°109.5°
O15P1O16114.1°109.5°
O17P1O16114.1°109.5°
P1O17H2109.5°114.0°
P1O16H1109.5°114.0°
H3C16H4109.4°109.4°
H5C14H6109.5°109.5°
H5C14H7109.5°109.4°
H6C14H7109.5°109.5°
H8C15H9109.5°109.4°
H8C15H10109.4°109.4°
H9C15H10109.4°109.5°
H14C5'H15109.4°109.5°
H24N6H25109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2'C2'C3'C1'113.3°118.3°
O2'C2'C3'H19127.3°123.6°
O2'C2'C1'H19126.6°123.7°
O2'C2'C3'O3'31.7°20.4°
O2'C2'C3'C4'149.6°139.1°
O2'C2'C1'N982.1°86.3°
O2'C2'C1'O4'158.8°155.2°
O2'C2'C3'H1792.6°102.1°
O2'C2'C1'H2140.8°36.7°
O2PPO1PO5'125.0°119.9°
O2PPO1PO11124.7°120.1°
O2PPO5'O11113.7°120.1°
O2PPO11C1171.9°54.9°
O2PPO5'C5'59.6°55.0°
O2PPO1PH130.0°180.0°
C3'C2'C1'H19119.4°118.1°
C2'C3'O3'C4'113.1°114.8°
C2'C3'O3'H17123.6°122.6°
C2'C3'C4'H17117.9°118.8°
C3'C2'C1'N9163.8°155.5°
C3'C2'C1'O4'44.8°37.0°
C2'C3'C4'C5'99.7°121.5°
C2'C3'C4'O4'16.3°2.1°
C2'C3'C4'H16138.2°117.5°
C2'C3'O3'H18180.0°65.2°
C3'C2'O2'H20180.0°61.5°
C3'C2'C1'H2173.3°81.5°
C2'C1'N9C836.0°94.7°
C1'C2'C3'O3'81.6°97.9°
C1'C2'C3'C4'36.3°20.8°
C2'C1'N9O4'115.0°114.1°
C2'C1'N9H21122.6°123.0°
C2'C1'N9C4160.4°85.0°
C2'C1'O4'H21117.3°118.5°
C2'C1'O4'C4'35.9°40.1°
C1'C2'C3'H17154.1°139.6°
C1'C2'O2'H2072.3°174.2°
N7C8N9H22180.0°180.0°
N7C8N9C1'166.1°180.0°
N7C8N9C40.1°0.3°
C8N7C5C41.1°0.3°
C8N7C5C6177.7°180.0°
N9C8N7C50.6°0.0°
C8N9C1'C4163.6°179.7°
C8N9C4C50.8°0.4°
C8N9C1'O4'79.0°19.4°
C8N9C4N3179.1°179.7°
C8N9C1'H21158.6°142.3°
N7C5C4N91.2°0.4°
N7C5C6N64.6°0.1°
N7C5C4C6179.0°179.7°
N7C5C4N3179.7°179.7°
N7C5C6N1179.3°179.2°
C5N7C8H22179.4°180.0°
C15C13C12C1157.8°59.9°
C15C13C14C12120.3°120.0°
C15C13C14C16119.7°120.0°
C15C13C12C16120.3°120.0°
C15C13C12O13178.4°180.0°
C15C13C16O1460.9°60.0°
C15C13C16H359.1°60.0°
C15C13C16H4179.1°180.0°
C15C13C14H5180.0°180.0°
C15C13C14H660.0°60.1°
C15C13C14H760.0°60.0°
C13C15H8H9120.0°120.0°
C13C15H8H10120.0°120.0°
C13C15H9H10120.0°120.0°
C15C13C12H1161.3°60.0°
O3'C3'C4'H17124.0°122.6°
O3'C3'C4'C5'142.1°119.9°
O3'C3'C4'O4'101.8°120.7°
O3'C3'C4'H1620.0°1.2°
O3'C3'C2'H19159.0°144.0°
C3'C4'O4'C1'12.1°26.6°
C3'C4'C5'O5'67.6°175.7°
C3'C4'C5'O4'116.1°117.8°
C3'C4'C5'H16122.2°121.2°
C3'C4'O4'H16121.1°119.6°
C3'C4'C5'H14172.4°64.3°
C3'C4'C5'H1552.4°55.7°
C4'C3'O3'H1866.9°180.0°
C4'C3'C2'H1983.1°97.4°
C1'N9C4C5166.8°179.9°
N9C1'O4'H21121.9°123.0°
C1'N9C4N314.9°0.0°
N9C1'O4'C4'156.7°158.6°
N9C1'C2'H1944.4°37.4°
C1'N9C8H2213.9°0.0°
N9C4C5N3178.5°179.9°
N9C4C5C6177.8°179.8°
C4N9C1'O4'84.6°161.0°
N9C4N3C2177.8°180.0°
C4N9C1'H2137.8°38.0°
C4N9C8H22179.8°179.7°
O12C11O11P7.5°0.1°
O12C11O11C12174.5°180.0°
O12C11C12C13101.1°115.0°
O12C11C12O13138.4°5.0°
O12C11C12H1118.0°125.0°
O1PPO5'O11115.4°120.0°
O1PPO11C1159.0°65.1°
O1PPO5'C5'169.5°65.0°
O5'PO11C11174.1°175.0°
PO5'C5'C4'160.6°180.0°
O5'PO1PH13125.0°60.1°
PO5'C5'H1479.4°60.0°
PO5'C5'H1540.5°60.0°
PO11C11C12178.0°180.0°
O11PO5'C5'54.0°175.0°
O11PO1PH13124.7°59.9°
N6C6C5C4174.1°179.8°
N6C6C5N1174.7°179.3°
N6C6N1C2174.4°179.9°
C6N6H24H25120.0°180.0°
C4C5C6N10.6°0.4°
C5C4N3C20.3°0.2°
C6C5C4N30.7°0.0°
C5C6N1C20.0°0.6°
C5C6N6H24174.7°0.0°
C5C6N6H2565.3°180.0°
C1'O4'C4'C5'130.1°146.0°
C1'O4'C4'H16109.0°93.1°
O4'C1'C2'H1974.6°81.1°
O11C11C12C1384.2°64.9°
O11C11C12O1336.2°175.0°
O11C11C12H11156.7°55.0°
C11C12C13C1462.4°60.0°
C11C12C13O13120.6°120.1°
C11C12C13H11119.1°119.9°
C11C12C13C16178.1°179.9°
C11C12O13H11119.6°120.0°
C11C12O13H12180.0°60.0°
C14C13C12C16119.5°120.1°
C14C13C12O1358.2°60.1°
C14C13C16O14179.5°59.9°
C14C13C16H360.5°180.0°
C14C13C16H459.4°60.0°
C13C14H5H6120.0°120.0°
C13C14H5H7120.0°120.0°
C13C14H6H7120.0°120.1°
C14C13C15H8180.0°60.0°
C14C13C15H960.0°60.0°
C14C13C15H1060.0°180.0°
C14C13C12H11178.5°179.9°
O5'C5'C4'H14120.0°120.0°
O5'C5'C4'H15120.0°120.0°
O5'C5'C4'O4'176.3°66.4°
O5'C5'H14H15119.9°120.0°
O5'C5'C4'H1654.6°54.6°
C4N3C2N10.2°0.0°
C4N3C2H23179.8°179.9°
C5'C4'O4'H16120.9°121.0°
C4'C5'H14H15120.0°120.0°
C5'C4'C3'H1718.1°2.7°
C6N1C2N30.4°0.4°
C6N1C2H23179.6°179.7°
N1C6N6H240.0°179.3°
N1C6N6H25120.0°0.7°
C13C12O13H11119.4°120.0°
C12C13C16O1459.5°180.0°
C12C13C16H3179.5°60.0°
C12C13C16H460.6°60.0°
C12C13C14H559.6°60.0°
C12C13C14H6179.6°180.0°
C12C13C14H760.4°59.9°
C12C13C15H859.6°59.9°
C12C13C15H960.4°179.9°
C12C13C15H10179.6°60.0°
C13C12O13H1259.0°60.0°
C16C13C12O1361.3°60.0°
C13C16O14H3120.0°120.0°
C13C16O14H4120.0°120.0°
C13C16O14P1171.5°180.0°
C13C16H3H4119.9°120.0°
C16C13C14H560.3°60.1°
C16C13C14H659.7°59.9°
C16C13C14H7179.7°180.0°
C16C13C15H860.7°180.0°
C16C13C15H9179.3°60.0°
C16C13C15H1059.3°60.0°
C16C13C12H1159.0°60.0°
O4'C4'C5'H1456.3°53.5°
O4'C4'C5'H1563.6°173.5°
O4'C4'C3'H17134.2°116.7°
C4'O4'C1'H2181.4°78.4°
C16O14P1O15160.4°55.0°
C16O14P1O1739.9°65.0°
C16O14P1O1680.0°175.0°
O14C16H3H4119.9°120.0°
N3C2N1H23180.0°179.9°
O14P1O15O17113.3°120.0°
O14P1O15O16112.5°120.0°
O14P1O17O16113.0°120.0°
O14P1O16H1112.1°180.0°
O14P1O17H2112.7°60.0°
P1O14C16H368.5°60.0°
P1O14C16H451.4°60.0°
O15P1O17O16134.3°120.0°
O15P1O16H10.0°60.1°
O15P1O17H20.0°180.0°
O17P1O16H1134.6°60.0°
O16P1O17H2134.3°60.0°
H5C14H6H7120.0°120.0°
H8C15H9H10119.9°119.9°
H11C12O13H1260.4°180.0°
H14C5'C4'H1665.4°174.6°
H15C5'C4'H16174.6°65.5°
H16C4'C3'H17104.0°123.7°
H17C3'O3'H1856.4°57.4°
H17C3'C2'H1934.7°21.4°
H19C2'O2'H2053.4°62.1°
H19C2'C1'H21167.3°160.4°

224931

PDB entries from 2024-09-11

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