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PTD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.51Å1.54Å
C1O1doub1.21Å1.25Å
C1HC1sing1.08Å1.10Å
C2C3sing1.53Å1.55Å
C2HC21sing1.09Å1.12Å
C2HC22sing1.09Å1.11Å
C3C4sing1.53Å1.56Å
C3HC31sing1.09Å1.11Å
C3HC32sing1.09Å1.11Å
C4C5sing1.51Å1.54Å
C4HC41sing1.09Å1.11Å
C4HC42sing1.09Å1.12Å
C5O5doub1.21Å1.25Å
C5HC5sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O1121.6°120.0°
C2C1HC1129.9°120.0°
C1C2C3113.1°109.5°
C1C2HC21110.8°109.4°
C1C2HC22110.9°109.5°
O1C1HC1108.5°120.0°
C3C2HC21110.9°109.4°
C3C2HC22110.9°109.5°
C2C3C4112.3°109.5°
C2C3HC31111.2°109.5°
C2C3HC32111.1°109.5°
HC21C2HC2299.4°109.5°
C4C3HC31111.1°109.5°
C4C3HC32111.2°109.5°
C3C4C5113.4°109.5°
C3C4HC41110.8°109.5°
C3C4HC42110.8°109.5°
HC31C3HC3299.2°109.4°
C5C4HC41110.8°109.5°
C5C4HC42110.7°109.4°
C4C5O5121.9°120.0°
C4C5HC5129.7°120.0°
HC41C4HC4299.5°109.4°
O5C5HC5108.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O1HC1180.0°179.7°
C1C2C3HC21125.3°119.9°
C1C2C3HC22125.3°120.1°
C1C2HC21HC22116.7°120.0°
C1C2C3C461.4°180.0°
C1C2C3HC31173.4°60.0°
C1C2C3HC3263.8°59.9°
O1C1C2C399.1°120.1°
O1C1C2HC2126.2°120.0°
O1C1C2HC22135.6°0.0°
HC1C1C2C380.9°59.7°
HC1C1C2HC21153.8°60.3°
HC1C1C2HC2244.4°179.7°
C3C2HC21HC22116.8°120.0°
C2C3C4HC31125.2°120.0°
C2C3C4HC32125.2°120.1°
C2C3HC31HC32117.0°120.0°
C2C3C4C5178.6°180.0°
C2C3C4HC4156.1°60.0°
C2C3C4HC4253.3°60.0°
HC21C2C3C463.9°60.0°
HC21C2C3HC3161.4°180.0°
HC21C2C3HC32170.9°60.0°
HC22C2C3C4173.3°60.0°
HC22C2C3HC3148.1°60.0°
HC22C2C3HC3261.5°180.0°
C4C3HC31HC32117.1°120.0°
C3C4C5HC41125.3°120.1°
C3C4C5HC42125.3°120.0°
C3C4HC41HC42116.6°120.0°
C3C4C5O5156.6°120.1°
C3C4C5HC523.4°60.0°
HC31C3C4C553.3°60.0°
HC31C3C4HC41178.7°180.0°
HC31C3C4HC4271.9°60.0°
HC32C3C4C556.2°60.0°
HC32C3C4HC4169.1°60.1°
HC32C3C4HC42178.5°180.0°
C5C4HC41HC42116.6°119.9°
C4C5O5HC5180.0°179.9°
HC41C4C5O531.2°0.0°
HC41C4C5HC5148.8°179.9°
HC42C4C5O578.1°119.9°
HC42C4C5HC5101.8°60.0°

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PDB entries from 2024-07-17

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