PT0
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
CA | N | sing | 1.47Å | 1.44Å | |
N | HN | sing | 1.01Å | 1.00Å | |
N | HNA | sing | 1.01Å | 1.00Å | |
C5 | O | doub | 1.21Å | 1.25Å | |
O1P | P | doub | 1.48Å | 1.49Å | |
CA | P | sing | 1.82Å | 1.82Å | |
O2P | P | sing | 1.61Å | 1.50Å | |
P | CP | sing | 1.82Å | 1.79Å | |
CP | C5 | sing | 1.51Å | 1.52Å | |
C5 | O6 | sing | 1.34Å | 1.42Å | |
O6 | C6 | sing | 1.45Å | 1.41Å | |
C7 | C6 | sing | 1.53Å | 1.51Å | |
C6 | H6 | sing | 1.09Å | 1.10Å | |
C6 | H6A | sing | 1.09Å | 1.10Å | |
C7 | H7 | sing | 1.09Å | 1.10Å | |
C7 | H7A | sing | 1.09Å | 1.10Å | |
C7 | H7B | sing | 1.09Å | 1.10Å | |
CB | CA | sing | 1.53Å | 1.58Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
CG | CB | sing | 1.53Å | 1.58Å | |
CB | HB | sing | 1.09Å | 1.10Å | |
CB | HBA | sing | 1.09Å | 1.10Å | |
CD1 | CG | sing | 1.53Å | 1.52Å | |
CG | CD2 | sing | 1.53Å | 1.52Å | |
CG | HG | sing | 1.09Å | 1.10Å | |
CP | HP | sing | 1.09Å | 1.10Å | |
CP | HPA | sing | 1.09Å | 1.10Å | |
O2P | HO2P | sing | 0.97Å | 0.95Å | |
CD1 | HD1 | sing | 1.09Å | 1.10Å | |
CD1 | HD1A | sing | 1.09Å | 1.10Å | |
CD1 | HD1B | sing | 1.09Å | 1.10Å | |
CD2 | HD2 | sing | 1.09Å | 1.10Å | |
CD2 | HD2A | sing | 1.09Å | 1.10Å | |
CD2 | HD2B | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CA | N | HN | 109.5° | 111.0° |
CA | N | HNA | 109.5° | 111.0° |
N | CA | P | 108.4° | 109.4° |
N | CA | CB | 109.0° | 109.5° |
N | CA | HA | 111.9° | 109.5° |
HN | N | HNA | 109.5° | 111.0° |
O | C5 | CP | 121.2° | 120.0° |
O | C5 | O6 | 116.3° | 120.0° |
O1P | P | CA | 105.7° | 109.5° |
O1P | P | O2P | 113.3° | 109.5° |
O1P | P | CP | 111.1° | 109.5° |
CA | P | O2P | 106.1° | 109.4° |
CA | P | CP | 108.6° | 109.5° |
P | CA | CB | 113.2° | 109.4° |
P | CA | HA | 107.5° | 109.5° |
O2P | P | CP | 111.7° | 109.4° |
P | O2P | HO2P | 109.5° | 114.0° |
P | CP | C5 | 115.2° | 109.5° |
P | CP | HP | 107.6° | 109.4° |
P | CP | HPA | 107.6° | 109.5° |
CP | C5 | O6 | 121.1° | 120.0° |
C5 | CP | HP | 107.6° | 109.5° |
C5 | CP | HPA | 107.6° | 109.5° |
C5 | O6 | C6 | 119.7° | 117.0° |
O6 | C6 | C7 | 109.4° | 109.5° |
O6 | C6 | H6 | 109.5° | 109.5° |
O6 | C6 | H6A | 109.5° | 109.5° |
C7 | C6 | H6 | 109.5° | 109.4° |
C7 | C6 | H6A | 109.5° | 109.5° |
C6 | C7 | H7 | 109.5° | 109.5° |
C6 | C7 | H7A | 109.4° | 109.5° |
C6 | C7 | H7B | 109.4° | 109.5° |
H6 | C6 | H6A | 109.5° | 109.5° |
H7 | C7 | H7A | 109.4° | 109.4° |
H7 | C7 | H7B | 109.5° | 109.4° |
H7A | C7 | H7B | 109.5° | 109.5° |
CB | CA | HA | 106.9° | 109.5° |
CA | CB | CG | 112.6° | 109.5° |
CA | CB | HB | 108.4° | 109.5° |
CA | CB | HBA | 108.4° | 109.5° |
CG | CB | HB | 108.4° | 109.4° |
CG | CB | HBA | 108.4° | 109.5° |
CB | CG | CD1 | 106.7° | 109.5° |
CB | CG | CD2 | 114.6° | 109.5° |
CB | CG | HG | 108.7° | 109.4° |
HB | CB | HBA | 110.5° | 109.4° |
CD1 | CG | CD2 | 111.8° | 109.5° |
CD1 | CG | HG | 111.8° | 109.5° |
CG | CD1 | HD1 | 109.5° | 109.5° |
CG | CD1 | HD1A | 109.5° | 109.5° |
CG | CD1 | HD1B | 109.4° | 109.5° |
CD2 | CG | HG | 103.3° | 109.5° |
CG | CD2 | HD2 | 109.5° | 109.5° |
CG | CD2 | HD2A | 109.4° | 109.5° |
CG | CD2 | HD2B | 109.5° | 109.5° |
HP | CP | HPA | 111.3° | 109.4° |
HD1 | CD1 | HD1A | 109.5° | 109.4° |
HD1 | CD1 | HD1B | 109.4° | 109.5° |
HD1A | CD1 | HD1B | 109.5° | 109.5° |
HD2 | CD2 | HD2A | 109.5° | 109.5° |
HD2 | CD2 | HD2B | 109.4° | 109.4° |
HD2A | CD2 | HD2B | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CA | N | HN | HNA | 120.0° | 124.0° |
N | CA | P | O1P | 55.7° | 66.6° |
N | CA | P | CB | 121.0° | 119.9° |
N | CA | P | HA | 121.1° | 120.0° |
N | CA | P | O2P | 176.2° | 173.4° |
N | CA | P | CP | 63.6° | 53.5° |
N | CA | CB | HA | 121.1° | 120.0° |
N | CA | CB | CG | 54.2° | 174.4° |
N | CA | CB | HB | 65.8° | 54.4° |
N | CA | CB | HBA | 174.2° | 65.6° |
HN | N | CA | P | 180.0° | 64.0° |
HN | N | CA | CB | 56.4° | 176.1° |
HN | N | CA | HA | 61.6° | 56.0° |
HNA | N | CA | P | 60.0° | 60.0° |
HNA | N | CA | CB | 176.5° | 59.9° |
HNA | N | CA | HA | 58.4° | 180.0° |
O | C5 | CP | P | 70.5° | 79.9° |
O | C5 | CP | O6 | 166.1° | 179.9° |
O | C5 | O6 | C6 | 3.4° | 0.1° |
O | C5 | CP | HP | 169.5° | 40.1° |
O | C5 | CP | HPA | 49.5° | 160.0° |
O1P | P | CA | O2P | 120.5° | 120.0° |
O1P | P | CA | CP | 119.2° | 120.0° |
O1P | P | O2P | CP | 126.3° | 120.0° |
O1P | P | CP | C5 | 161.3° | 55.0° |
O1P | P | CA | CB | 65.3° | 53.4° |
O1P | P | CA | HA | 176.8° | 173.4° |
O1P | P | CP | HP | 41.3° | 65.0° |
O1P | P | CP | HPA | 78.7° | 175.0° |
O1P | P | O2P | HO2P | 0.0° | 180.0° |
CA | P | O2P | CP | 118.2° | 120.0° |
CA | P | CP | C5 | 82.9° | 175.0° |
P | CA | CB | HA | 118.2° | 120.1° |
P | CA | CB | CG | 174.9° | 65.7° |
P | CA | CB | HB | 54.9° | 174.3° |
P | CA | CB | HBA | 65.2° | 54.4° |
CA | P | CP | HP | 157.1° | 55.0° |
CA | P | CP | HPA | 37.1° | 65.0° |
CA | P | O2P | HO2P | 115.5° | 60.0° |
O2P | P | CP | C5 | 33.8° | 65.0° |
O2P | P | CA | CB | 55.2° | 66.6° |
O2P | P | CA | HA | 62.7° | 53.4° |
O2P | P | CP | HP | 86.2° | 175.0° |
O2P | P | CP | HPA | 153.8° | 55.0° |
P | CP | C5 | HP | 120.0° | 120.0° |
P | CP | C5 | HPA | 120.0° | 120.1° |
P | CP | C5 | O6 | 95.6° | 100.0° |
CP | P | CA | CB | 175.4° | 173.4° |
CP | P | CA | HA | 57.6° | 66.5° |
P | CP | HP | HPA | 117.7° | 120.0° |
CP | P | O2P | HO2P | 126.3° | 60.0° |
CP | C5 | O6 | C6 | 163.3° | 180.0° |
C5 | CP | HP | HPA | 117.7° | 120.0° |
C5 | O6 | C6 | C7 | 133.5° | 180.0° |
C5 | O6 | C6 | H6 | 106.5° | 60.0° |
C5 | O6 | C6 | H6A | 13.5° | 59.9° |
O6 | C5 | CP | HP | 24.4° | 140.0° |
O6 | C5 | CP | HPA | 144.4° | 20.1° |
O6 | C6 | C7 | H6 | 120.0° | 120.0° |
O6 | C6 | C7 | H6A | 120.0° | 120.0° |
O6 | C6 | H6 | H6A | 120.1° | 120.0° |
O6 | C6 | C7 | H7 | 180.0° | 60.0° |
O6 | C6 | C7 | H7A | 60.0° | 60.0° |
O6 | C6 | C7 | H7B | 60.0° | 180.0° |
C7 | C6 | H6 | H6A | 120.0° | 120.0° |
C6 | C7 | H7 | H7A | 120.0° | 120.0° |
C6 | C7 | H7 | H7B | 120.0° | 120.0° |
C6 | C7 | H7A | H7B | 120.0° | 120.1° |
H6 | C6 | C7 | H7 | 60.1° | 180.0° |
H6 | C6 | C7 | H7A | 180.0° | 60.0° |
H6 | C6 | C7 | H7B | 60.0° | 60.0° |
H6A | C6 | C7 | H7 | 59.9° | 60.0° |
H6A | C6 | C7 | H7A | 60.0° | 180.0° |
H6A | C6 | C7 | H7B | 180.0° | 59.9° |
H7 | C7 | H7A | H7B | 120.0° | 119.9° |
CA | CB | CG | HB | 120.0° | 120.0° |
CA | CB | CG | HBA | 120.0° | 120.1° |
CA | CB | HB | HBA | 118.7° | 120.0° |
CA | CB | CG | CD1 | 176.5° | 65.4° |
CA | CB | CG | CD2 | 59.2° | 174.5° |
CA | CB | CG | HG | 55.9° | 54.6° |
HA | CA | CB | CG | 66.9° | 54.4° |
HA | CA | CB | HB | 173.1° | 65.6° |
HA | CA | CB | HBA | 53.1° | 174.4° |
CG | CB | HB | HBA | 118.7° | 120.0° |
CB | CG | CD1 | CD2 | 126.0° | 120.0° |
CB | CG | CD1 | HG | 118.7° | 120.0° |
CB | CG | CD2 | HG | 118.1° | 120.0° |
CB | CG | CD1 | HD1 | 180.0° | 60.0° |
CB | CG | CD1 | HD1A | 60.0° | 60.0° |
CB | CG | CD1 | HD1B | 60.0° | 180.0° |
CB | CG | CD2 | HD2 | 180.0° | 59.9° |
CB | CG | CD2 | HD2A | 60.0° | 180.0° |
CB | CG | CD2 | HD2B | 60.0° | 60.0° |
HB | CB | CG | CD1 | 56.5° | 54.6° |
HB | CB | CG | CD2 | 179.2° | 65.5° |
HB | CB | CG | HG | 64.2° | 174.6° |
HBA | CB | CG | CD1 | 63.5° | 174.5° |
HBA | CB | CG | CD2 | 60.8° | 54.5° |
HBA | CB | CG | HG | 175.8° | 65.5° |
CD1 | CG | CD2 | HG | 120.3° | 120.0° |
CG | CD1 | HD1 | HD1A | 120.0° | 120.0° |
CG | CD1 | HD1 | HD1B | 120.0° | 120.0° |
CG | CD1 | HD1A | HD1B | 120.0° | 120.0° |
CD1 | CG | CD2 | HD2 | 58.4° | 180.0° |
CD1 | CG | CD2 | HD2A | 61.6° | 60.0° |
CD1 | CG | CD2 | HD2B | 178.4° | 60.1° |
CD2 | CG | CD1 | HD1 | 53.9° | 180.0° |
CD2 | CG | CD1 | HD1A | 174.0° | 60.0° |
CD2 | CG | CD1 | HD1B | 66.1° | 60.0° |
CG | CD2 | HD2 | HD2A | 120.0° | 120.0° |
CG | CD2 | HD2 | HD2B | 120.0° | 120.0° |
CG | CD2 | HD2A | HD2B | 120.0° | 120.1° |
HG | CG | CD1 | HD1 | 61.3° | 60.0° |
HG | CG | CD1 | HD1A | 58.7° | 180.0° |
HG | CG | CD1 | HD1B | 178.7° | 60.0° |
HG | CG | CD2 | HD2 | 61.9° | 60.0° |
HG | CG | CD2 | HD2A | 178.1° | 60.0° |
HG | CG | CD2 | HD2B | 58.1° | 179.9° |
HD1 | CD1 | HD1A | HD1B | 120.0° | 120.0° |
HD2 | CD2 | HD2A | HD2B | 120.0° | 119.9° |