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PRT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O13C13sing1.43Å1.44Å
O1PPdoub1.48Å1.58Å
C13C14sing1.54Å1.52Å
C13C12sing1.55Å1.53Å
C14C15sing1.53Å1.53Å
C14O14sing1.44Å1.44Å
C15O15sing1.43Å1.43Å
O12C12sing1.43Å1.43Å
C12C11sing1.55Å1.48Å
PO15sing1.61Å1.61Å
PO2Psing1.61Å1.48Å
PO3Psing1.61Å1.59Å
O1BPBdoub1.48Å1.61Å
O14C11sing1.44Å1.46Å
C11N1sing1.47Å1.48Å
O2GPGdoub1.48Å1.59Å
O2APAdoub1.48Å1.49Å
O2BPBsing1.61Å1.47Å
PBO3Bsing1.61Å1.62Å
PBO3Asing1.61Å1.58Å
O3GPGsing1.61Å1.48Å
N1C2sing1.36Å1.39Å
N1C6sing1.40Å1.35Å
PGO3Bsing1.61Å1.63Å
PGO1Gsing1.61Å1.68Å
C2N3doub1.31Å1.37Å
N6C6doub1.31Å1.33Å
PAO3Asing1.61Å1.52Å
PAO1Asing1.61Å1.56Å
PAO5'sing1.61Å1.62Å
C6C5sing1.47Å1.35Å
N3C4sing1.34Å1.34Å
O5'C5'sing1.43Å1.42Å
C5C4doub1.41Å1.35ÅAromatic
C5N7sing1.33Å1.33ÅAromatic
C4N9sing1.36Å1.32ÅAromatic
N7C8doub1.31Å1.34ÅAromatic
C5'C4'sing1.53Å1.53Å
C3'O3'sing1.43Å1.40Å
C3'C4'sing1.54Å1.52Å
C3'C2'sing1.55Å1.55Å
N9C8sing1.37Å1.34ÅAromatic
N9C1'sing1.46Å1.52Å
C4'O4'sing1.44Å1.46Å
O4'C1'sing1.44Å1.43Å
C2'C1'sing1.55Å1.50Å
C2'O2'sing1.43Å1.42Å
O1GH1sing0.97Å0.95Å
O3GH2sing0.97Å0.95Å
O2BH3sing0.97Å0.95Å
O1AH4sing0.97Å0.95Å
C5'H5sing1.09Å1.10Å
C5'H6sing1.09Å1.10Å
C4'H7sing1.09Å1.10Å
C3'H8sing1.09Å1.10Å
O3'H9sing0.97Å0.95Å
C2'H10sing1.09Å1.10Å
O2'H11sing0.97Å0.95Å
C1'H12sing1.09Å1.10Å
C8H13sing1.08Å1.08Å
N6H14sing0.97Å1.00Å
C2H16sing1.08Å1.08Å
C11H17sing1.09Å1.10Å
C12H18sing1.09Å1.10Å
O12H19sing0.97Å0.95Å
C13H20sing1.09Å1.10Å
O13H21sing0.97Å0.95Å
C14H22sing1.09Å1.10Å
C15H23sing1.09Å1.10Å
C15H24sing1.09Å1.10Å
O3PH25sing0.97Å0.95Å
O2PH26sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O13C13C14106.8°110.5°
O13C13C12110.5°110.6°
O13C13H20112.4°110.6°
C13O13H21109.5°114.0°
O1PPO15108.3°109.5°
O1PPO2P116.1°109.4°
O1PPO3P105.8°109.5°
C14C13C12104.4°104.2°
C13C14C15112.8°109.9°
C13C14O14105.7°107.4°
C14C13H20111.2°110.5°
C13C14H22109.5°109.9°
C13C12O12109.5°110.9°
C13C12C1199.4°102.1°
C13C12H18112.3°110.9°
C12C13H20111.1°110.3°
C15C14O14109.0°109.9°
C14C15O15110.6°109.5°
C15C14H22109.3°109.9°
C14C15H23109.2°109.4°
C14C15H24109.2°109.4°
C14O14C11107.1°106.9°
O14C14H22110.5°109.9°
C15O15P119.8°123.0°
O15C15H23109.2°109.5°
O15C15H24109.2°109.5°
O12C12C11107.6°110.9°
O12C12H18113.9°110.8°
C12O12H19109.5°114.0°
C12C11O14105.2°103.7°
C12C11N1120.6°110.6°
C12C11H17109.3°110.6°
C11C12H18113.1°110.9°
O15PO2P111.3°109.5°
O15PO3P106.5°109.5°
O2PPO3P108.3°109.5°
PO2PH26109.5°114.0°
PO3PH25109.5°114.0°
O1BPBO2B112.3°109.5°
O1BPBO3B111.1°109.5°
O1BPBO3A112.7°109.4°
O14C11N1102.4°110.6°
O14C11H17109.5°110.7°
C11N1C2115.9°120.5°
C11N1C6125.2°120.6°
N1C11H17109.2°110.5°
O2GPGO3G111.3°109.5°
O2GPGO3B101.3°109.5°
O2GPGO1G111.1°109.5°
O2APAO3A117.7°109.5°
O2APAO1A113.5°109.5°
O2APAO5'113.6°109.5°
O2BPBO3B121.9°109.5°
O2BPBO3A102.4°109.5°
PBO2BH3109.5°114.0°
O3BPBO3A94.4°109.5°
PBO3BPG127.5°134.0°
PBO3APA128.0°134.0°
O3GPGO3B111.6°109.5°
O3GPGO1G114.5°109.5°
PGO3GH2109.5°114.0°
C2N1C6118.8°118.9°
N1C2N3119.4°123.4°
N1C2H16120.3°118.3°
N1C6N6122.0°123.6°
N1C6C5120.5°112.7°
O3BPGO1G106.1°109.5°
PGO1GH1109.5°114.0°
C2N3C4120.1°119.2°
N3C2H16120.3°118.3°
N6C6C5117.5°123.7°
C6N6H14112.0°120.0°
O3APAO1A106.3°109.4°
O3APAO5'100.1°109.5°
O1APAO5'104.1°109.5°
PAO1AH4109.5°114.0°
PAO5'C5'121.7°123.0°
C6C5C4120.4°118.6°
C6C5N7132.7°133.5°
N3C4C5120.7°120.7°
N3C4N9129.9°133.4°
O5'C5'C4'107.0°109.5°
O5'C5'H5110.1°109.5°
O5'C5'H6110.1°109.5°
C4C5N7106.9°107.9°
C5C4N9109.4°105.9°
C5N7C8108.0°109.1°
C4N9C8106.8°107.4°
C4N9C1'129.7°126.3°
N7C8N9108.9°109.7°
N7C8H13125.5°125.2°
C5'C4'C3'116.4°109.9°
C5'C4'O4'109.6°109.9°
C4'C5'H5110.1°109.5°
C4'C5'H6110.1°109.4°
C5'C4'H7108.9°109.9°
O3'C3'C4'110.4°110.5°
O3'C3'C2'111.0°110.5°
O3'C3'H8113.2°110.4°
C3'O3'H9109.5°114.0°
C4'C3'C2'99.2°104.2°
C3'C4'O4'102.7°107.3°
C3'C4'H7109.0°110.0°
C4'C3'H8111.3°110.5°
C3'C2'C1'103.6°102.1°
C3'C2'O2'109.9°110.9°
C2'C3'H8110.9°110.6°
C3'C2'H10110.1°110.9°
C8N9C1'123.4°126.3°
N9C8H13125.6°125.1°
N9C1'O4'106.8°110.6°
N9C1'C2'113.9°110.6°
N9C1'H12109.4°110.6°
C4'O4'C1'108.7°107.0°
O4'C4'H7109.9°109.9°
O4'C1'C2'106.6°103.5°
O4'C1'H12110.6°110.7°
C1'C2'O2'110.0°110.9°
C1'C2'H10110.8°110.9°
C2'C1'H12109.6°110.6°
O2'C2'H10112.1°110.8°
C2'O2'H11109.5°114.0°
H5C5'H6109.4°109.4°
H23C15H24109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O13C13C14C12117.1°118.8°
O13C13C14H20123.0°122.7°
O13C13C12H20125.5°122.7°
O13C13C14C15142.8°119.7°
O13C13C14O1498.3°120.7°
O13C13C12O1235.0°20.4°
O13C13C12C1177.6°97.9°
O13C13C12H18162.6°144.0°
O13C13C14H2220.8°1.3°
O1PPO15C1534.0°55.0°
O1PPO15O2P128.8°120.0°
O1PPO15O3P113.4°120.0°
O1PPO2PO3P118.7°120.0°
O1PPO3PH250.0°59.9°
O1PPO2PH260.0°180.0°
C14C13C12H20120.0°118.6°
C13C14C15O14117.0°118.0°
C13C14C15H22122.1°121.0°
C13C14O14H22118.4°119.5°
C13C14C15O1548.9°175.0°
C14C13C12O12149.5°139.1°
C14C13C12C1136.9°20.9°
C13C14O14C117.6°26.3°
C14C13C12H1882.9°97.3°
C14C13O13H21180.0°180.0°
C13C14C15H23169.0°55.0°
C13C14C15H2471.3°65.0°
C12C13C14C15100.1°121.5°
C12C13C14O1418.8°1.9°
C13C12O12C11107.1°112.7°
C13C12O12H18126.7°123.6°
C13C12C11H18119.3°118.2°
C13C12C11O1442.2°37.0°
C13C12C11N1157.0°155.5°
C13C12C11H1775.2°81.7°
C13C12O12H19180.0°67.2°
C12C13O13H2167.0°65.2°
C12C13C14H22137.9°117.6°
C15C14O14H22120.1°121.0°
C14C15O15H23120.2°120.0°
C14C15O15H24120.2°120.0°
C14C15O15P156.9°180.0°
C15C14O14C11129.1°145.8°
C15C14C13H2019.7°3.0°
C14C15H23H24119.5°119.9°
O14C14C15O1568.2°67.0°
C14O14C11C1232.3°39.9°
C14O14C11N1159.2°158.4°
C14O14C11H1785.0°78.8°
O14C14C13H20138.7°116.6°
O14C14C15H2352.0°173.0°
O14C14C15H24171.7°53.0°
C15O15PO2P162.8°65.0°
C15O15PO3P79.4°175.0°
O15C15C14H22170.9°54.0°
O15C15H23H24119.5°120.1°
O12C12C11H18126.7°123.6°
O12C12C11O14156.3°155.2°
O12C12C11N188.9°86.2°
O12C12C11H1738.9°36.6°
O12C12C13H2090.5°102.3°
C12C11O14N1126.9°118.6°
C12C11O14H17117.3°118.6°
C12C11N1H17127.8°122.8°
C12C11N1C2120.3°62.9°
C12C11N1C663.8°117.2°
C11C12O12H1972.9°180.0°
C11C12C13H20156.9°139.4°
O15PO2PO3P116.8°120.0°
PO15C15H2382.9°60.0°
PO15C15H2436.7°60.0°
O15PO3PH25115.1°180.0°
O15PO2PH26124.6°60.0°
O2PPO3PH25125.1°60.0°
O3PPO2PH26118.7°60.0°
O1BPBO2BO3B135.6°120.0°
O1BPBO2BO3A121.2°120.0°
O1BPBO3BO3A116.4°120.0°
O1BPBO3BPG94.2°40.0°
O1BPBO3APA9.8°45.0°
O1BPBO2BH30.0°180.0°
O14C11N1H17116.0°122.9°
O14C11N1C2123.4°51.4°
O14C11N1C652.5°128.6°
O14C11C12H1877.0°81.2°
C11O14C14H22110.8°93.2°
C11N1C2C6176.2°180.0°
C11N1C2N3176.8°156.0°
C11N1C6N63.9°29.3°
C11N1C6C5176.5°150.6°
C11N1C2H163.2°24.0°
N1C11C12H1837.8°37.4°
O2GPGO3BPB95.7°40.0°
O2GPGO3GO3B112.4°120.0°
O2GPGO3GO1G127.0°120.0°
O2GPGO3BO1G116.1°120.0°
O2GPGO1GH10.0°180.0°
O2GPGO3GH20.0°59.9°
O2APAO3APB37.9°45.0°
O2APAO3AO1A128.5°120.0°
O2APAO3AO5'123.5°120.0°
O2APAO1AO5'124.0°120.0°
O2APAO5'C5'179.6°55.0°
O2APAO1AH40.0°180.0°
O2BPBO3BO3A107.6°120.0°
O2BPBO3BPG41.9°80.0°
O2BPBO3APA130.7°75.0°
PBO3BPGO3G22.9°160.0°
PBO3BPGO1G148.3°80.0°
O3BPBO3APA105.3°165.0°
O3BPBO2BH3135.6°60.0°
O3APBO3BPG149.4°160.0°
PBO3APAO1A90.6°75.0°
PBO3APAO5'161.4°165.0°
O3APBO2BH3121.2°60.0°
O3GPGO3BO1G125.4°120.0°
O3GPGO1GH1127.2°60.0°
N1C2N3H16180.0°180.0°
C2N1C6N6179.7°150.6°
C2N1C6C50.7°29.4°
N1C2N3C40.0°3.8°
C2N1C11H177.5°174.3°
C6N1C2N30.6°24.1°
N1C6N6C5179.6°179.9°
N1C6C5C40.2°18.2°
N1C6C5N7179.8°162.5°
N1C6N6H14179.6°180.0°
C6N1C2H16179.4°155.9°
C6N1C11H17168.5°5.7°
O3BPGO1GH1109.2°60.0°
O3BPGO3GH2112.4°180.0°
O1GPGO3GH2127.0°60.0°
C2N3C4C50.5°8.0°
C2N3C4N9179.9°172.6°
N6C6C5C4179.8°161.9°
N6C6C5N70.6°17.4°
O3APAO1AO5'105.1°120.0°
O3APAO5'C5'53.3°175.0°
O3APAO1AH4130.9°60.0°
O1APAO5'C5'56.5°65.0°
PAO5'C5'C4'172.3°180.0°
O5'PAO1AH4124.0°60.0°
PAO5'C5'H552.6°60.0°
PAO5'C5'H668.1°60.1°
C6C5C4N30.5°0.0°
C6C5C4N7179.7°179.5°
C6C5C4N9180.0°179.6°
C6C5N7C8179.8°179.7°
C5C6N6H140.0°0.1°
N3C4C5N9179.5°179.6°
N3C4C5N7179.3°179.5°
N3C4N9C8179.6°179.7°
N3C4N9C1'1.0°0.6°
C4N3C2H16180.0°176.2°
O5'C5'C4'H5119.6°120.1°
O5'C5'C4'H6119.6°120.0°
O5'C5'C4'C3'49.7°175.7°
O5'C5'C4'O4'66.2°66.5°
O5'C5'H5H6121.1°120.0°
O5'C5'C4'H7173.5°54.5°
C4C5N7C80.5°0.3°
C5C4N9C80.2°0.2°
C5C4N9C1'179.5°179.9°
N7C5C4N90.2°0.1°
C5N7C8N90.6°0.4°
C5N7C8H13179.4°179.6°
C4N9C8N70.5°0.4°
C4N9C8C1'179.4°179.7°
C4N9C1'O4'62.8°156.7°
C4N9C1'C2'54.5°89.2°
C4N9C1'H12177.5°33.7°
C4N9C8H13179.5°179.7°
N7C8N9H13180.0°180.0°
N7C8N9C1'179.9°179.9°
C5'C4'C3'O3'80.9°119.9°
C5'C4'C3'O4'119.7°119.4°
C5'C4'C3'H7123.7°121.1°
C5'C4'C3'C2'162.5°121.4°
C5'C4'O4'H7119.7°121.0°
C5'C4'O4'C1'157.9°145.9°
C4'C5'H5H6121.1°119.9°
C5'C4'C3'H845.7°2.6°
O3'C3'C4'C2'116.6°118.7°
O3'C3'C4'H8126.6°122.5°
O3'C3'C2'H8126.8°122.6°
O3'C3'C4'O4'159.4°120.7°
O3'C3'C2'C1'153.5°97.8°
O3'C3'C2'O2'36.0°20.4°
O3'C3'C4'H742.8°1.2°
O3'C3'C2'H1087.9°144.0°
C4'C3'C2'H8117.1°118.7°
C3'C4'O4'H7115.9°119.6°
C3'C4'O4'C1'33.5°26.5°
C4'C3'C2'C1'37.4°20.9°
C4'C3'C2'O2'80.1°139.1°
C3'C4'C5'H569.9°64.2°
C3'C4'C5'H6169.3°55.7°
C4'C3'O3'H9180.0°180.0°
C4'C3'C2'H10156.0°97.4°
C3'C2'C1'N998.7°155.5°
C2'C3'C4'O4'42.8°2.0°
C3'C2'C1'O4'18.7°37.0°
C3'C2'C1'O2'117.5°118.2°
C3'C2'C1'H10118.1°118.2°
C3'C2'O2'H10122.8°123.6°
C2'C3'C4'H773.8°117.5°
C2'C3'O3'H971.0°65.2°
C3'C2'O2'H11180.0°61.5°
C3'C2'C1'H12138.4°81.5°
C8N9C1'O4'117.9°23.6°
C8N9C1'C2'124.8°90.5°
C8N9C1'H121.8°146.6°
N9C1'O4'C4'131.0°158.6°
N9C1'O4'C2'122.0°118.5°
N9C1'O4'H12118.9°123.0°
N9C1'C2'H12122.8°122.9°
N9C1'C2'O2'143.8°86.3°
N9C1'C2'H1019.3°37.3°
C1'N9C8H130.1°0.1°
C4'O4'C1'C2'9.0°40.1°
O4'C4'C5'H5174.1°53.6°
O4'C4'C5'H653.4°173.5°
O4'C4'C3'H874.0°116.8°
C4'O4'C1'H12110.1°78.4°
O4'C1'C2'H12119.7°118.6°
O4'C1'C2'O2'98.7°155.2°
C1'O4'C4'H782.4°93.1°
O4'C1'C2'H10136.8°81.2°
C1'C2'O2'H10123.8°123.7°
C1'C2'C3'H879.7°139.6°
C1'C2'O2'H1166.6°174.2°
O2'C2'C3'H8162.8°102.2°
O2'C2'C1'H1221.0°36.6°
H5C5'C4'H753.8°174.6°
H6C5'C4'H766.9°65.4°
H7C4'C3'H8169.4°123.7°
H8C3'O3'H954.5°57.5°
H8C3'C2'H1038.9°21.3°
H10C2'O2'H1157.2°62.2°
H10C2'C1'H12103.5°160.2°
H17C11C12H18165.5°160.2°
H18C12O12H1953.3°56.4°
H18C12C13H2037.1°21.3°
H20C13O13H2157.7°57.4°
H20C13C14H22102.2°124.0°
H22C14C15H2368.9°66.0°
H22C14C15H2450.8°174.0°

222926

PDB entries from 2024-07-24

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