PRH
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | C2 | sing | 1.37Å | 1.34Å | |
N1 | C6 | sing | 1.48Å | 1.39Å | |
N1 | HN1 | sing | 0.97Å | 1.02Å | |
C2 | N3 | doub | 1.31Å | 1.34Å | |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N3 | C4 | sing | 1.36Å | 1.40Å | |
C4 | C5 | doub | 1.37Å | 1.36Å | Aromatic |
C4 | N9 | sing | 1.36Å | 1.37Å | Aromatic |
C5 | C6 | sing | 1.51Å | 1.45Å | |
C5 | N7 | sing | 1.32Å | 1.35Å | Aromatic |
C6 | O6 | sing | 1.43Å | 1.60Å | |
C6 | H6 | sing | 1.09Å | 1.12Å | |
O6 | HO6 | sing | 0.97Å | 0.95Å | |
N7 | C8 | doub | 1.31Å | 1.34Å | Aromatic |
N7 | HN7 | sing | 0.97Å | 1.02Å | |
C8 | N9 | sing | 1.36Å | 1.34Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N9 | C1' | sing | 1.46Å | 1.46Å | |
C1' | C2' | sing | 1.55Å | 1.55Å | |
C1' | O4' | sing | 1.44Å | 1.41Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | C3' | sing | 1.55Å | 1.56Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C4' | sing | 1.54Å | 1.60Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C4' | O4' | sing | 1.44Å | 1.38Å | |
C4' | C5' | sing | 1.53Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
C5' | H5'1 | sing | 1.09Å | 1.11Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
O5' | HO5' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | N1 | C6 | 121.0° | 120.3° |
C2 | N1 | HN1 | 108.1° | 119.9° |
N1 | C2 | N3 | 122.2° | 122.0° |
N1 | C2 | H2 | 118.8° | 119.0° |
C6 | N1 | HN1 | 108.0° | 119.9° |
N1 | C6 | C5 | 117.7° | 106.2° |
N1 | C6 | O6 | 109.7° | 110.2° |
N1 | C6 | H6 | 104.4° | 110.1° |
N3 | C2 | H2 | 119.0° | 119.0° |
C2 | N3 | C4 | 120.2° | 118.4° |
N3 | C4 | C5 | 119.9° | 122.0° |
N3 | C4 | N9 | 132.5° | 131.4° |
C5 | C4 | N9 | 107.6° | 106.6° |
C4 | C5 | C6 | 119.0° | 120.9° |
C4 | C5 | N7 | 107.7° | 108.3° |
C4 | N9 | C8 | 107.4° | 106.8° |
C4 | N9 | C1' | 125.6° | 126.6° |
C6 | C5 | N7 | 133.3° | 130.8° |
C5 | C6 | O6 | 112.3° | 110.1° |
C5 | C6 | H6 | 101.3° | 110.1° |
C5 | N7 | C8 | 108.2° | 109.3° |
C5 | N7 | HN7 | 126.1° | 125.4° |
O6 | C6 | H6 | 110.7° | 110.1° |
C6 | O6 | HO6 | 109.7° | 106.8° |
C8 | N7 | HN7 | 125.8° | 125.3° |
N7 | C8 | N9 | 109.1° | 108.9° |
N7 | C8 | H8 | 125.5° | 125.5° |
N9 | C8 | H8 | 125.4° | 125.6° |
C8 | N9 | C1' | 126.9° | 126.5° |
N9 | C1' | C2' | 111.4° | 110.8° |
N9 | C1' | O4' | 111.9° | 110.6° |
N9 | C1' | H1' | 105.3° | 110.5° |
C2' | C1' | O4' | 105.7° | 103.5° |
C2' | C1' | H1' | 111.6° | 110.6° |
C1' | C2' | O2' | 110.0° | 110.9° |
C1' | C2' | C3' | 110.2° | 102.1° |
C1' | C2' | H2' | 108.9° | 110.9° |
O4' | C1' | H1' | 111.1° | 110.6° |
C1' | O4' | C4' | 106.5° | 107.0° |
O2' | C2' | C3' | 110.3° | 110.9° |
O2' | C2' | H2' | 108.9° | 110.8° |
C2' | O2' | HO2' | 109.9° | 106.8° |
C3' | C2' | H2' | 108.6° | 111.0° |
C2' | C3' | O3' | 111.1° | 110.5° |
C2' | C3' | C4' | 91.1° | 104.0° |
C2' | C3' | H3' | 120.3° | 110.5° |
O3' | C3' | C4' | 111.5° | 110.8° |
O3' | C3' | H3' | 102.9° | 110.4° |
C3' | O3' | HO3' | 111.1° | 106.8° |
C4' | C3' | H3' | 120.0° | 110.5° |
C3' | C4' | O4' | 111.9° | 107.4° |
C3' | C4' | C5' | 111.9° | 109.9° |
C3' | C4' | H4' | 106.0° | 109.9° |
O4' | C4' | C5' | 109.2° | 109.8° |
O4' | C4' | H4' | 108.9° | 109.9° |
C5' | C4' | H4' | 108.8° | 109.9° |
C4' | C5' | O5' | 110.7° | 109.5° |
C4' | C5' | H5'1 | 111.8° | 109.5° |
C4' | C5' | H5'2 | 111.8° | 109.5° |
O5' | C5' | H5'1 | 111.7° | 109.5° |
O5' | C5' | H5'2 | 111.7° | 109.4° |
C5' | O5' | HO5' | 110.7° | 106.8° |
H5'1 | C5' | H5'2 | 98.6° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | N1 | C6 | HN1 | 125.3° | 179.9° |
N1 | C2 | N3 | H2 | 180.0° | 180.0° |
N1 | C2 | N3 | C4 | 0.0° | 1.7° |
C2 | N1 | C6 | C5 | 0.2° | 36.4° |
C2 | N1 | C6 | O6 | 130.3° | 82.8° |
C2 | N1 | C6 | H6 | 111.0° | 155.6° |
C6 | N1 | C2 | N3 | 0.1° | 29.1° |
C6 | N1 | C2 | H2 | 180.0° | 150.8° |
N1 | C6 | C5 | C4 | 0.4° | 22.1° |
N1 | C6 | C5 | O6 | 128.9° | 119.3° |
N1 | C6 | C5 | H6 | 113.0° | 119.1° |
N1 | C6 | C5 | N7 | 179.6° | 157.5° |
N1 | C6 | O6 | H6 | 114.7° | 121.6° |
N1 | C6 | O6 | HO6 | 180.0° | 63.1° |
HN1 | N1 | C2 | N3 | 125.2° | 150.8° |
HN1 | N1 | C2 | H2 | 54.8° | 29.2° |
HN1 | N1 | C6 | C5 | 125.0° | 143.5° |
HN1 | N1 | C6 | O6 | 5.1° | 97.3° |
HN1 | N1 | C6 | H6 | 123.7° | 24.4° |
C2 | N3 | C4 | C5 | 0.2° | 13.0° |
C2 | N3 | C4 | N9 | 179.7° | 168.0° |
H2 | C2 | N3 | C4 | 180.0° | 178.2° |
N3 | C4 | C5 | N9 | 179.9° | 179.2° |
N3 | C4 | C5 | C6 | 0.4° | 0.6° |
N3 | C4 | C5 | N7 | 179.6° | 179.6° |
N3 | C4 | N9 | C8 | 179.7° | 179.5° |
N3 | C4 | N9 | C1' | 3.8° | 0.8° |
C4 | C5 | C6 | N7 | 180.0° | 179.7° |
C4 | C5 | C6 | O6 | 129.3° | 97.1° |
C4 | C5 | C6 | H6 | 112.6° | 141.3° |
C4 | C5 | N7 | C8 | 0.4° | 0.3° |
C4 | C5 | N7 | HN7 | 179.6° | 179.7° |
C5 | C4 | N9 | C8 | 0.4° | 0.4° |
C5 | C4 | N9 | C1' | 176.1° | 179.9° |
N9 | C4 | C5 | C6 | 179.5° | 179.9° |
N9 | C4 | C5 | N7 | 0.5° | 0.4° |
C4 | N9 | C8 | N7 | 0.2° | 0.3° |
C4 | N9 | C8 | C1' | 176.5° | 179.7° |
C4 | N9 | C8 | H8 | 179.8° | 179.8° |
C4 | N9 | C1' | C2' | 139.3° | 89.1° |
C4 | N9 | C1' | O4' | 102.7° | 156.8° |
C4 | N9 | C1' | H1' | 18.1° | 33.9° |
C5 | C6 | O6 | H6 | 112.4° | 121.6° |
C5 | C6 | O6 | HO6 | 47.0° | 180.0° |
C6 | C5 | N7 | C8 | 179.6° | 179.9° |
C6 | C5 | N7 | HN7 | 0.3° | 0.1° |
N7 | C5 | C6 | O6 | 50.7° | 83.2° |
N7 | C5 | C6 | H6 | 67.5° | 38.4° |
C5 | N7 | C8 | HN7 | 180.0° | 180.0° |
C5 | N7 | C8 | N9 | 0.1° | 0.0° |
C5 | N7 | C8 | H8 | 179.9° | 180.0° |
H6 | C6 | O6 | HO6 | 65.3° | 58.4° |
N7 | C8 | N9 | H8 | 180.0° | 180.0° |
N7 | C8 | N9 | C1' | 176.3° | 179.9° |
HN7 | N7 | C8 | N9 | 179.9° | 180.0° |
HN7 | N7 | C8 | H8 | 0.1° | 0.0° |
C8 | N9 | C1' | C2' | 36.6° | 90.6° |
C8 | N9 | C1' | O4' | 81.5° | 23.6° |
C8 | N9 | C1' | H1' | 157.7° | 146.5° |
H8 | C8 | N9 | C1' | 3.7° | 0.1° |
N9 | C1' | C2' | O4' | 121.7° | 118.6° |
N9 | C1' | C2' | H1' | 117.4° | 122.9° |
N9 | C1' | O4' | H1' | 117.4° | 122.8° |
N9 | C1' | C2' | O2' | 125.9° | 86.1° |
N9 | C1' | C2' | C3' | 112.4° | 155.7° |
N9 | C1' | C2' | H2' | 6.7° | 37.4° |
N9 | C1' | O4' | C4' | 137.5° | 158.8° |
C2' | C1' | O4' | H1' | 121.2° | 118.5° |
C1' | C2' | O2' | C3' | 121.7° | 112.7° |
C1' | C2' | O2' | H2' | 119.3° | 123.6° |
C1' | C2' | C3' | H2' | 119.2° | 118.3° |
C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
C1' | C2' | C3' | O3' | 139.5° | 97.9° |
C1' | C2' | C3' | C4' | 25.9° | 21.0° |
C1' | C2' | C3' | H3' | 100.3° | 139.6° |
C2' | C1' | O4' | C4' | 16.1° | 40.1° |
O4' | C1' | C2' | O2' | 112.4° | 155.3° |
O4' | C1' | C2' | C3' | 9.3° | 37.1° |
O4' | C1' | C2' | H2' | 128.4° | 81.2° |
C1' | O4' | C4' | C3' | 36.9° | 26.5° |
C1' | O4' | C4' | C5' | 161.4° | 145.9° |
C1' | O4' | C4' | H4' | 79.9° | 93.1° |
H1' | C1' | C2' | O2' | 8.5° | 36.7° |
H1' | C1' | C2' | C3' | 130.2° | 81.4° |
H1' | C1' | C2' | H2' | 110.7° | 160.2° |
H1' | C1' | O4' | C4' | 105.1° | 78.5° |
O2' | C2' | C3' | H2' | 119.2° | 123.6° |
O2' | C2' | C3' | O3' | 17.9° | 20.2° |
O2' | C2' | C3' | C4' | 95.7° | 139.1° |
O2' | C2' | C3' | H3' | 138.1° | 102.3° |
C3' | C2' | O2' | HO2' | 58.4° | 67.3° |
C2' | C3' | O3' | C4' | 100.0° | 114.7° |
C2' | C3' | O3' | H3' | 130.1° | 122.5° |
C2' | C3' | C4' | H3' | 126.5° | 118.6° |
C2' | C3' | O3' | HO3' | 180.0° | 179.9° |
C2' | C3' | C4' | O4' | 38.2° | 1.9° |
C2' | C3' | C4' | C5' | 161.1° | 121.4° |
C2' | C3' | C4' | H4' | 80.4° | 117.6° |
H2' | C2' | O2' | HO2' | 60.7° | 56.4° |
H2' | C2' | C3' | O3' | 101.3° | 143.8° |
H2' | C2' | C3' | C4' | 145.1° | 97.3° |
H2' | C2' | C3' | H3' | 18.9° | 21.3° |
O3' | C3' | C4' | H3' | 120.3° | 122.7° |
O3' | C3' | C4' | O4' | 151.4° | 120.7° |
O3' | C3' | C4' | C5' | 85.7° | 119.9° |
O3' | C3' | C4' | H4' | 32.8° | 1.1° |
C4' | C3' | O3' | HO3' | 80.0° | 65.2° |
C3' | C4' | O4' | C5' | 124.5° | 119.5° |
C3' | C4' | O4' | H4' | 116.8° | 119.5° |
C3' | C4' | C5' | H4' | 116.8° | 121.0° |
C3' | C4' | C5' | O5' | 46.6° | 175.3° |
C3' | C4' | C5' | H5'1 | 171.8° | 64.6° |
C3' | C4' | C5' | H5'2 | 78.7° | 55.3° |
H3' | C3' | O3' | HO3' | 49.9° | 57.5° |
H3' | C3' | C4' | O4' | 88.3° | 116.6° |
H3' | C3' | C4' | C5' | 34.6° | 2.8° |
H3' | C3' | C4' | H4' | 153.2° | 123.8° |
O4' | C4' | C5' | H4' | 118.7° | 121.0° |
O4' | C4' | C5' | O5' | 77.9° | 66.8° |
O4' | C4' | C5' | H5'1 | 47.3° | 53.3° |
O4' | C4' | C5' | H5'2 | 156.8° | 173.3° |
C4' | C5' | O5' | H5'1 | 125.3° | 120.1° |
C4' | C5' | O5' | H5'2 | 125.3° | 120.0° |
C4' | C5' | H5'1 | H5'2 | 117.7° | 120.0° |
C4' | C5' | O5' | HO5' | 180.0° | 180.0° |
H4' | C4' | C5' | O5' | 163.4° | 54.3° |
H4' | C4' | C5' | H5'1 | 71.4° | 174.4° |
H4' | C4' | C5' | H5'2 | 38.1° | 65.7° |
O5' | C5' | H5'1 | H5'2 | 117.6° | 120.0° |
H5'1 | C5' | O5' | HO5' | 54.7° | 60.0° |
H5'2 | C5' | O5' | HO5' | 54.7° | 60.0° |