PR8
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O10 | C | sing | 1.34Å | 1.37Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | CA | sing | 1.51Å | 1.55Å | |
| CA | N | sing | 1.49Å | 1.49Å | |
| CD | N | sing | 1.48Å | 1.46Å | |
| N | HN | sing | 1.01Å | 1.00Å | |
| O2P | P | doub | 1.48Å | 1.62Å | |
| O5' | P | sing | 1.61Å | 1.62Å | |
| P | O1P | sing | 1.61Å | 1.48Å | |
| P | O10 | sing | 1.61Å | 1.63Å | |
| C2 | N1 | doub | 1.32Å | 1.33Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.34Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.33Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N3 | C4 | doub | 1.33Å | 1.34Å | Aromatic |
| C4 | N9 | sing | 1.37Å | 1.33Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.39Å | Aromatic |
| C6 | C5 | doub | 1.41Å | 1.39Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.33Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.34Å | |
| N6 | HN6 | sing | 0.97Å | 1.00Å | |
| N6 | HN6A | sing | 0.97Å | 1.00Å | |
| C8 | N7 | doub | 1.30Å | 1.33Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C1' | N9 | sing | 1.47Å | 1.49Å | |
| CB | CA | sing | 1.54Å | 1.52Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | CG | sing | 1.54Å | 1.50Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CB | HBA | sing | 1.09Å | 1.10Å | |
| CG | CD | sing | 1.54Å | 1.53Å | |
| CD | HD | sing | 1.09Å | 1.10Å | |
| CD | HDA | sing | 1.09Å | 1.10Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| CG | HGA | sing | 1.09Å | 1.10Å | |
| C2' | C1' | sing | 1.54Å | 1.54Å | |
| C1' | O4' | sing | 1.44Å | 1.47Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O1P | HO1P | sing | 0.97Å | 0.95Å | |
| O2' | C2' | sing | 1.43Å | 1.43Å | |
| C2' | C3' | sing | 1.55Å | 1.50Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O10 | C | O | 125.3° | 120.0° |
| O10 | C | CA | 114.7° | 120.0° |
| C | O10 | P | 114.5° | 116.9° |
| O | C | CA | 120.0° | 120.0° |
| C | CA | N | 109.2° | 110.4° |
| C | CA | CB | 107.3° | 110.4° |
| C | CA | HA | 110.6° | 110.4° |
| CA | N | CD | 105.6° | 104.2° |
| CA | N | HN | 110.8° | 111.0° |
| N | CA | CB | 107.8° | 104.6° |
| N | CA | HA | 110.1° | 110.4° |
| CD | N | HN | 110.8° | 111.0° |
| N | CD | CG | 105.8° | 104.6° |
| N | CD | HD | 110.7° | 110.4° |
| N | CD | HDA | 110.7° | 110.4° |
| O2P | P | O5' | 105.4° | 109.5° |
| O2P | P | O1P | 112.3° | 109.5° |
| O2P | P | O10 | 103.7° | 109.5° |
| O5' | P | O1P | 115.0° | 109.5° |
| O5' | P | O10 | 106.7° | 109.4° |
| P | O5' | C5' | 117.9° | 123.0° |
| O1P | P | O10 | 112.8° | 109.5° |
| P | O1P | HO1P | 109.5° | 114.0° |
| C2 | N1 | C6 | 121.0° | 121.2° |
| N1 | C2 | N3 | 121.6° | 122.5° |
| N1 | C2 | H2 | 119.2° | 118.7° |
| N1 | C6 | C5 | 118.3° | 118.5° |
| N1 | C6 | N6 | 121.0° | 120.8° |
| N3 | C2 | H2 | 119.2° | 118.8° |
| C2 | N3 | C4 | 120.9° | 120.6° |
| N3 | C4 | N9 | 134.0° | 134.9° |
| N3 | C4 | C5 | 118.7° | 119.1° |
| N9 | C4 | C5 | 107.3° | 106.0° |
| C4 | N9 | C8 | 107.4° | 107.5° |
| C4 | N9 | C1' | 127.6° | 126.3° |
| C4 | C5 | C6 | 119.5° | 118.2° |
| C4 | C5 | N7 | 107.5° | 107.2° |
| C6 | C5 | N7 | 133.0° | 134.7° |
| C5 | C6 | N6 | 120.7° | 120.7° |
| C5 | N7 | C8 | 107.8° | 109.4° |
| C6 | N6 | HN6 | 109.5° | 120.0° |
| C6 | N6 | HN6A | 109.4° | 120.0° |
| HN6 | N6 | HN6A | 109.5° | 120.0° |
| N7 | C8 | N9 | 109.9° | 110.0° |
| N7 | C8 | H8 | 125.0° | 125.0° |
| N9 | C8 | H8 | 125.0° | 125.1° |
| C8 | N9 | C1' | 125.0° | 126.3° |
| N9 | C1' | C2' | 116.9° | 110.4° |
| N9 | C1' | O4' | 108.4° | 110.3° |
| N9 | C1' | H1' | 103.8° | 110.3° |
| CB | CA | HA | 111.8° | 110.5° |
| CA | CB | CG | 101.9° | 105.0° |
| CA | CB | HB | 112.1° | 110.3° |
| CA | CB | HBA | 112.1° | 110.3° |
| CG | CB | HB | 112.1° | 110.3° |
| CG | CB | HBA | 112.1° | 110.3° |
| CB | CG | CD | 101.4° | 105.1° |
| CB | CG | HG | 112.3° | 110.3° |
| CB | CG | HGA | 112.2° | 110.3° |
| HB | CB | HBA | 106.8° | 110.4° |
| CG | CD | HD | 110.7° | 110.4° |
| CG | CD | HDA | 110.7° | 110.5° |
| CD | CG | HG | 112.3° | 110.4° |
| CD | CG | HGA | 112.3° | 110.3° |
| HD | CD | HDA | 108.2° | 110.3° |
| HG | CG | HGA | 106.6° | 110.3° |
| C2' | C1' | O4' | 105.1° | 104.8° |
| C2' | C1' | H1' | 107.2° | 110.4° |
| C1' | C2' | O2' | 109.3° | 110.5° |
| C1' | C2' | C3' | 103.1° | 104.0° |
| C1' | C2' | H2' | 112.3° | 110.5° |
| O4' | C1' | H1' | 115.9° | 110.4° |
| C1' | O4' | C4' | 105.6° | 105.3° |
| O2' | C2' | C3' | 105.1° | 110.5° |
| O2' | C2' | H2' | 110.5° | 110.6° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C3' | C2' | H2' | 116.0° | 110.5° |
| C2' | C3' | O3' | 108.3° | 110.5° |
| C2' | C3' | C4' | 98.1° | 104.1° |
| C2' | C3' | H3' | 117.4° | 110.5° |
| O3' | C3' | C4' | 110.1° | 110.5° |
| O3' | C3' | H3' | 106.8° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 115.8° | 110.5° |
| C3' | C4' | O4' | 102.2° | 104.8° |
| C3' | C4' | C5' | 111.0° | 110.4° |
| C3' | C4' | H4' | 113.9° | 110.4° |
| O4' | C4' | C5' | 111.4° | 110.4° |
| O4' | C4' | H4' | 113.5° | 110.4° |
| C5' | C4' | H4' | 105.1° | 110.4° |
| C4' | C5' | O5' | 111.5° | 109.5° |
| C4' | C5' | H5' | 108.8° | 109.4° |
| C4' | C5' | H5'A | 108.8° | 109.5° |
| O5' | C5' | H5' | 108.8° | 109.5° |
| O5' | C5' | H5'A | 108.8° | 109.5° |
| H5' | C5' | H5'A | 110.1° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O10 | C | O | CA | 179.9° | 179.7° |
| O10 | C | CA | N | 179.2° | 161.7° |
| C | O10 | P | O2P | 172.1° | 55.0° |
| C | O10 | P | O5' | 61.1° | 175.0° |
| C | O10 | P | O1P | 66.2° | 65.0° |
| O10 | C | CA | CB | 62.6° | 83.1° |
| O10 | C | CA | HA | 59.6° | 39.4° |
| O | C | CA | N | 1.0° | 18.6° |
| O | C | O10 | P | 1.6° | 0.0° |
| O | C | CA | CB | 117.5° | 96.6° |
| O | C | CA | HA | 120.3° | 140.9° |
| C | CA | N | CB | 116.2° | 118.8° |
| C | CA | N | HA | 121.5° | 122.3° |
| C | CA | N | CD | 112.9° | 158.3° |
| C | CA | N | HN | 127.1° | 82.2° |
| CA | C | O10 | P | 178.3° | 179.7° |
| C | CA | CB | HA | 121.4° | 122.4° |
| C | CA | CB | CG | 89.8° | 142.6° |
| C | CA | CB | HB | 30.2° | 23.7° |
| C | CA | CB | HBA | 150.2° | 98.5° |
| CA | N | CD | HN | 120.0° | 119.6° |
| N | CA | CB | HA | 121.1° | 118.8° |
| N | CA | CB | CG | 27.6° | 23.9° |
| N | CA | CB | HB | 147.7° | 95.0° |
| N | CA | CB | HBA | 92.3° | 142.7° |
| CA | N | CD | CG | 22.3° | 39.5° |
| CA | N | CD | HD | 97.7° | 79.3° |
| CA | N | CD | HDA | 142.3° | 158.4° |
| CD | N | CA | CB | 3.3° | 39.5° |
| CD | N | CA | HA | 125.5° | 79.4° |
| N | CD | CG | CB | 39.5° | 23.9° |
| N | CD | CG | HD | 120.0° | 118.8° |
| N | CD | CG | HDA | 120.0° | 118.9° |
| N | CD | HD | HDA | 121.5° | 122.3° |
| N | CD | CG | HG | 80.5° | 95.0° |
| N | CD | CG | HGA | 159.5° | 142.7° |
| HN | N | CA | CB | 116.7° | 159.1° |
| HN | N | CA | HA | 5.5° | 40.1° |
| HN | N | CD | CG | 142.3° | 159.0° |
| HN | N | CD | HD | 22.3° | 40.2° |
| HN | N | CD | HDA | 97.7° | 82.0° |
| O2P | P | O5' | O1P | 124.3° | 120.0° |
| O2P | P | O5' | O10 | 109.8° | 120.0° |
| O2P | P | O1P | O10 | 116.7° | 120.0° |
| O2P | P | O1P | HO1P | 0.0° | 180.0° |
| O2P | P | O5' | C5' | 49.3° | 55.0° |
| O5' | P | O1P | O10 | 122.7° | 119.9° |
| O5' | P | O1P | HO1P | 120.7° | 60.0° |
| P | O5' | C5' | C4' | 124.9° | 180.0° |
| P | O5' | C5' | H5' | 115.1° | 60.0° |
| P | O5' | C5' | H5'A | 4.9° | 60.0° |
| O1P | P | O5' | C5' | 173.6° | 65.0° |
| O10 | P | O1P | HO1P | 116.7° | 60.0° |
| O10 | P | O5' | C5' | 60.5° | 175.0° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| C2 | N1 | C6 | C5 | 0.5° | 0.0° |
| C2 | N1 | C6 | N6 | 179.3° | 180.0° |
| C6 | N1 | C2 | N3 | 0.3° | 0.0° |
| C6 | N1 | C2 | H2 | 179.7° | 180.0° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| N1 | C6 | C5 | N6 | 179.8° | 180.0° |
| N1 | C6 | C5 | N7 | 179.6° | 180.0° |
| N1 | C6 | N6 | HN6 | 0.0° | 0.0° |
| N1 | C6 | N6 | HN6A | 120.0° | 180.0° |
| C2 | N3 | C4 | N9 | 179.9° | 179.9° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| H2 | C2 | N3 | C4 | 180.0° | 180.0° |
| N3 | C4 | N9 | C5 | 179.9° | 179.9° |
| N3 | C4 | C5 | C6 | 0.1° | 0.1° |
| N3 | C4 | C5 | N7 | 179.5° | 180.0° |
| N3 | C4 | N9 | C8 | 179.5° | 180.0° |
| N3 | C4 | N9 | C1' | 0.5° | 0.1° |
| N9 | C4 | C5 | C6 | 180.0° | 180.0° |
| N9 | C4 | C5 | N7 | 0.6° | 0.1° |
| C4 | N9 | C8 | N7 | 0.3° | 0.0° |
| C4 | N9 | C8 | C1' | 179.1° | 180.0° |
| C4 | N9 | C8 | H8 | 179.7° | 180.0° |
| C4 | N9 | C1' | C2' | 111.2° | 88.1° |
| C4 | N9 | C1' | O4' | 130.4° | 156.5° |
| C4 | N9 | C1' | H1' | 6.6° | 34.2° |
| C4 | C5 | C6 | N7 | 179.3° | 179.9° |
| C4 | C5 | C6 | N6 | 179.5° | 179.9° |
| C4 | C5 | N7 | C8 | 0.4° | 0.1° |
| C5 | C4 | N9 | C8 | 0.5° | 0.0° |
| C5 | C4 | N9 | C1' | 179.6° | 180.0° |
| C5 | C6 | N6 | HN6 | 179.8° | 180.0° |
| C5 | C6 | N6 | HN6A | 59.8° | 0.1° |
| C6 | C5 | N7 | C8 | 179.7° | 180.0° |
| N7 | C5 | C6 | N6 | 0.2° | 0.0° |
| C5 | N7 | C8 | N9 | 0.0° | 0.0° |
| C5 | N7 | C8 | H8 | 180.0° | 180.0° |
| C6 | N6 | HN6 | HN6A | 120.0° | 179.9° |
| N7 | C8 | N9 | H8 | 180.0° | 180.0° |
| N7 | C8 | N9 | C1' | 179.4° | 180.0° |
| C8 | N9 | C1' | C2' | 69.9° | 91.9° |
| C8 | N9 | C1' | O4' | 48.5° | 23.6° |
| C8 | N9 | C1' | H1' | 172.3° | 145.8° |
| H8 | C8 | N9 | C1' | 0.6° | 0.0° |
| N9 | C1' | C2' | O4' | 120.2° | 118.8° |
| N9 | C1' | C2' | H1' | 116.0° | 122.3° |
| N9 | C1' | O4' | H1' | 116.2° | 122.2° |
| N9 | C1' | C2' | O2' | 146.7° | 98.5° |
| N9 | C1' | C2' | C3' | 101.8° | 142.8° |
| N9 | C1' | C2' | H2' | 23.8° | 24.2° |
| N9 | C1' | O4' | C4' | 139.5° | 159.4° |
| CA | CB | CG | HB | 120.0° | 118.9° |
| CA | CB | CG | HBA | 120.0° | 118.9° |
| CA | CB | HB | HBA | 123.0° | 122.2° |
| CA | CB | CG | CD | 39.8° | 0.0° |
| CA | CB | CG | HG | 80.2° | 118.9° |
| CA | CB | CG | HGA | 159.8° | 118.9° |
| HA | CA | CB | CG | 148.8° | 95.0° |
| HA | CA | CB | HB | 91.2° | 146.2° |
| HA | CA | CB | HBA | 28.8° | 23.9° |
| CG | CB | HB | HBA | 123.1° | 122.2° |
| CB | CG | CD | HG | 120.0° | 118.9° |
| CB | CG | CD | HGA | 120.0° | 118.9° |
| CB | CG | CD | HD | 80.5° | 94.9° |
| CB | CG | CD | HDA | 159.5° | 142.7° |
| CB | CG | HG | HGA | 123.2° | 122.2° |
| HB | CB | CG | CD | 159.8° | 118.9° |
| HB | CB | CG | HG | 39.7° | 0.0° |
| HB | CB | CG | HGA | 80.3° | 122.2° |
| HBA | CB | CG | CD | 80.2° | 118.9° |
| HBA | CB | CG | HG | 159.8° | 122.2° |
| HBA | CB | CG | HGA | 39.8° | 0.0° |
| CG | CD | HD | HDA | 121.5° | 122.4° |
| CD | CG | HG | HGA | 123.3° | 122.2° |
| HD | CD | CG | HG | 159.5° | 146.1° |
| HD | CD | CG | HGA | 39.5° | 23.9° |
| HDA | CD | CG | HG | 39.5° | 23.8° |
| HDA | CD | CG | HGA | 80.5° | 98.4° |
| C2' | C1' | O4' | H1' | 118.1° | 118.9° |
| C1' | C2' | O2' | C3' | 110.1° | 114.6° |
| C1' | C2' | O2' | H2' | 124.0° | 122.7° |
| C1' | C2' | C3' | H2' | 123.2° | 118.6° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 155.4° | 118.6° |
| C1' | C2' | C3' | C4' | 41.0° | 0.0° |
| C1' | C2' | C3' | H3' | 83.7° | 118.6° |
| C2' | C1' | O4' | C4' | 13.8° | 40.5° |
| O4' | C1' | C2' | O2' | 93.1° | 142.6° |
| O4' | C1' | C2' | C3' | 18.3° | 24.0° |
| O4' | C1' | C2' | H2' | 143.9° | 94.6° |
| C1' | O4' | C4' | C3' | 40.5° | 40.5° |
| C1' | O4' | C4' | C5' | 159.0° | 159.3° |
| C1' | O4' | C4' | H4' | 82.6° | 78.3° |
| H1' | C1' | C2' | O2' | 30.8° | 23.7° |
| H1' | C1' | C2' | C3' | 142.2° | 94.9° |
| H1' | C1' | C2' | H2' | 92.2° | 146.5° |
| H1' | C1' | O4' | C4' | 104.3° | 78.4° |
| O2' | C2' | C3' | H2' | 122.4° | 122.7° |
| O2' | C2' | C3' | O3' | 40.9° | 0.0° |
| O2' | C2' | C3' | C4' | 73.5° | 118.6° |
| O2' | C2' | C3' | H3' | 161.8° | 122.7° |
| C3' | C2' | O2' | HO2' | 69.9° | 65.4° |
| C2' | C3' | O3' | C4' | 106.2° | 114.6° |
| C2' | C3' | O3' | H3' | 127.3° | 122.7° |
| C2' | C3' | C4' | H3' | 125.8° | 118.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | O4' | 50.7° | 24.0° |
| C2' | C3' | C4' | C5' | 169.6° | 142.8° |
| C2' | C3' | C4' | H4' | 72.1° | 94.8° |
| H2' | C2' | O2' | HO2' | 56.0° | 57.3° |
| H2' | C2' | C3' | O3' | 81.5° | 122.8° |
| H2' | C2' | C3' | C4' | 164.2° | 118.7° |
| H2' | C2' | C3' | H3' | 39.5° | 0.0° |
| O3' | C3' | C4' | H3' | 121.3° | 122.7° |
| O3' | C3' | C4' | O4' | 163.7° | 142.6° |
| O3' | C3' | C4' | C5' | 77.5° | 98.6° |
| O3' | C3' | C4' | H4' | 40.9° | 23.8° |
| C4' | C3' | O3' | HO3' | 73.8° | 176.1° |
| C3' | C4' | O4' | C5' | 118.5° | 118.8° |
| C3' | C4' | O4' | H4' | 123.1° | 118.8° |
| C3' | C4' | C5' | H4' | 123.6° | 122.3° |
| C3' | C4' | C5' | O5' | 51.2° | 175.0° |
| C3' | C4' | C5' | H5' | 171.2° | 55.0° |
| C3' | C4' | C5' | H5'A | 68.8° | 65.0° |
| H3' | C3' | O3' | HO3' | 52.7° | 61.2° |
| H3' | C3' | C4' | O4' | 75.1° | 94.6° |
| H3' | C3' | C4' | C5' | 43.8° | 24.2° |
| H3' | C3' | C4' | H4' | 162.1° | 146.5° |
| O4' | C4' | C5' | H4' | 123.3° | 122.3° |
| O4' | C4' | C5' | O5' | 62.0° | 69.6° |
| O4' | C4' | C5' | H5' | 58.0° | 170.3° |
| O4' | C4' | C5' | H5'A | 178.1° | 50.4° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'A | 119.2° | 120.0° |
| H4' | C4' | C5' | O5' | 174.7° | 52.7° |
| H4' | C4' | C5' | H5' | 65.3° | 67.3° |
| H4' | C4' | C5' | H5'A | 54.8° | 172.7° |
| O5' | C5' | H5' | H5'A | 119.1° | 120.0° |
