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PPU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.48Å1.49Å
POP2sing1.61Å1.48Å
POP3sing1.61Å1.33Å
PO5'sing1.61Å0.71Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
NCAsing1.47Å1.51Å
NHN1sing1.01Å1.02Å
NHN2sing1.01Å1.02Å
CACsing1.51Å1.49Å
CACBsing1.53Å1.58Å
CAHAsing1.09Å1.11Å
COdoub1.21Å1.21Å
CN3'sing1.35Å1.47Å
CBCGsing1.51Å1.51Å
CBHB1sing1.09Å1.12Å
CBHB2sing1.09Å1.11Å
CGCD1doub1.38Å1.41ÅAromatic
CGCD2sing1.38Å1.40ÅAromatic
CD1CE1sing1.38Å1.39ÅAromatic
CD1HD1sing1.08Å1.10Å
CD2CE2doub1.38Å1.42ÅAromatic
CD2HD2sing1.08Å1.10Å
CE1CZdoub1.39Å1.42ÅAromatic
CE1HE1sing1.08Å1.10Å
CE2CZsing1.39Å1.35ÅAromatic
CE2HE2sing1.08Å1.10Å
CZOCsing1.36Å1.36Å
OCCMsing1.43Å1.42Å
CMHM1sing1.09Å1.12Å
CMHM2sing1.09Å1.11Å
CMHM3sing1.09Å1.12Å
O5'C5'sing1.43Å1.41Å
C5'C4'sing1.53Å1.49Å
C5'H5'sing1.09Å1.12Å
C5'H5''sing1.09Å1.12Å
C4'O4'sing1.45Å1.46Å
C4'C3'sing1.54Å1.53Å
C4'H4'sing1.09Å1.12Å
O4'C1'sing1.44Å1.41Å
C3'N3'sing1.46Å1.49Å
C3'C2'sing1.54Å1.53Å
C3'H3'sing1.09Å1.12Å
N3'HN'3sing0.97Å1.02Å
C2'O2'sing1.43Å1.41Å
C2'C1'sing1.54Å1.49Å
C2'H2'sing1.09Å1.11Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.47Å1.49Å
C1'H1'sing1.09Å1.11Å
N9C8sing1.36Å1.35ÅAromatic
N9C4sing1.37Å1.38ÅAromatic
C8N7doub1.30Å1.27ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.36Å1.39ÅAromatic
C5C6doub1.40Å1.40ÅAromatic
C5C4sing1.41Å1.37ÅAromatic
C6N6sing1.38Å1.32Å
C6N1sing1.33Å1.38ÅAromatic
N6C9sing1.47Å1.45Å
N6C10sing1.47Å1.46Å
C9H91sing1.09Å1.12Å
C9H92sing1.09Å1.11Å
C9H93sing1.09Å1.12Å
C10H101sing1.09Å1.12Å
C10H102sing1.09Å1.11Å
C10H103sing1.09Å1.11Å
N1C2doub1.32Å1.35ÅAromatic
C2N3sing1.32Å1.30ÅAromatic
C2H2sing1.08Å1.10Å
C4N3doub1.33Å1.36ÅAromatic
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2119.4°109.5°
OP1POP3103.1°109.5°
OP1PO5'134.2°109.5°
OP2POP3122.9°109.4°
OP2PO5'72.7°109.5°
POP2HOP2119.4°106.8°
OP3PO5'104.2°109.5°
POP3HOP3103.1°106.8°
PO5'C5'108.2°106.8°
CANHN1111.4°106.7°
CANHN2111.5°106.6°
NCAC111.4°109.5°
NCACB110.9°109.5°
NCAHA109.2°109.5°
HN1NHN2111.4°106.7°
CCACB115.0°109.4°
CCAHA104.6°109.5°
CACO125.6°120.0°
CACN3'110.9°120.0°
CBCAHA105.1°109.5°
CACBCG110.6°109.4°
CACBHB1111.8°109.4°
CACBHB2111.8°109.4°
OCN3'123.5°120.0°
CN3'C3'117.4°120.0°
CN3'HN'3120.6°119.9°
CGCBHB1111.8°109.5°
CGCBHB2111.8°109.4°
CBCGCD1123.8°120.0°
CBCGCD2119.2°119.9°
HB1CBHB298.6°109.6°
CD1CGCD2117.0°120.1°
CGCD1CE1121.3°120.0°
CGCD1HD1120.0°120.0°
CGCD2CE2121.3°120.1°
CGCD2HD2118.8°120.0°
CE1CD1HD1118.7°120.0°
CD1CE1CZ120.6°120.0°
CD1CE1HE1118.6°120.0°
CE2CD2HD2120.0°120.0°
CD2CE2CZ121.4°120.0°
CD2CE2HE2121.8°120.0°
CZCE1HE1120.8°120.0°
CE1CZCE2118.4°119.9°
CE1CZOC115.0°120.1°
CZCE2HE2116.8°120.0°
CE2CZOC126.6°120.1°
CZOCCM117.6°106.8°
OCCMHM1117.7°109.5°
OCCMHM2109.3°109.4°
OCCMHM3109.3°109.5°
HM1CMHM2109.3°109.5°
HM1CMHM3109.2°109.5°
HM2CMHM3100.8°109.4°
O5'C5'C4'112.0°109.5°
O5'C5'H5'111.3°109.5°
O5'C5'H5''111.2°109.5°
C4'C5'H5'111.3°109.5°
C4'C5'H5''111.3°109.4°
C5'C4'O4'108.6°110.4°
C5'C4'C3'115.3°110.7°
C5'C4'H4'104.4°110.3°
H5'C5'H5''99.0°109.5°
O4'C4'C3'103.6°104.7°
O4'C4'H4'116.0°110.3°
C4'O4'C1'110.5°105.4°
C3'C4'H4'109.4°110.3°
C4'C3'N3'99.2°110.5°
C4'C3'C2'101.7°104.2°
C4'C3'H3'125.7°110.5°
O4'C1'C2'107.5°104.8°
O4'C1'N9108.4°110.5°
O4'C1'H1'112.6°110.4°
N3'C3'C2'122.7°110.6°
N3'C3'H3'105.9°110.5°
C3'N3'HN'3122.0°120.1°
C2'C3'H3'103.6°110.5°
C3'C2'O2'112.9°110.5°
C3'C2'C1'104.1°104.1°
C3'C2'H2'109.9°110.5°
O2'C2'C1'106.4°110.6°
O2'C2'H2'107.7°110.5°
C2'O2'HO2'112.8°106.8°
C1'C2'H2'116.0°110.5°
C2'C1'N9113.0°110.4°
C2'C1'H1'108.1°110.4°
N9C1'H1'107.3°110.3°
C1'N9C8127.4°126.3°
C1'N9C4127.0°126.3°
C8N9C4105.6°107.4°
N9C8N7115.3°110.0°
N9C8H8125.3°125.0°
N9C4C5104.7°106.0°
N9C4N3126.8°134.9°
N7C8H8119.4°124.9°
C8N7C5103.5°109.4°
N7C5C6130.0°134.7°
N7C5C4110.9°107.1°
C6C5C4119.1°118.2°
C5C6N6125.9°120.8°
C5C6N1112.2°118.4°
C5C4N3128.5°119.1°
N6C6N1122.0°120.8°
C6N6C9122.2°106.7°
C6N6C10121.5°106.7°
C6N1C2123.1°121.2°
C9N6C10116.3°106.7°
N6C9H91122.2°109.5°
N6C9H92107.7°109.5°
N6C9H93107.7°109.5°
N6C10H101121.5°109.5°
N6C10H102107.9°109.5°
N6C10H103107.9°109.5°
H91C9H92107.7°109.5°
H91C9H93107.6°109.5°
H92C9H93102.1°109.4°
H101C10H102107.9°109.4°
H101C10H103108.0°109.4°
H102C10H103102.0°109.5°
N1C2N3128.0°122.5°
N1C2H2118.5°118.8°
N3C2H2113.5°118.8°
C2N3C4109.2°120.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2OP3132.5°120.0°
OP1POP2O5'131.5°120.0°
OP1POP3O5'142.9°120.0°
OP1POP2HOP2180.0°60.0°
OP1POP3HOP3180.0°180.0°
OP1PO5'C5'27.2°60.0°
OP2POP3O5'78.3°120.0°
OP2POP3HOP341.3°60.0°
OP2PO5'C5'141.7°179.9°
OP3POP2HOP247.5°60.0°
OP3PO5'C5'97.8°60.0°
O5'POP2HOP248.5°180.0°
O5'POP3HOP337.1°59.9°
PO5'C5'C4'102.5°180.0°
PO5'C5'H5'132.2°60.0°
PO5'C5'H5''22.8°60.0°
CANHN1HN2125.2°113.7°
NCACCB127.3°120.0°
NCACHA117.9°120.0°
NCACBHA118.0°120.0°
NCACO38.3°30.0°
NCACN3'142.7°150.0°
NCACBCG52.8°60.0°
NCACBHB172.5°180.0°
NCACBHB2178.0°59.9°
HN1NCAC180.0°60.0°
HN1NCACB50.4°60.0°
HN1NCAHA65.0°180.0°
HN2NCAC54.8°173.8°
HN2NCACB74.8°53.8°
HN2NCAHA169.8°66.3°
CCACBHA114.5°120.0°
CACON3'178.9°180.0°
CCACBCG179.6°180.0°
CCACBHB155.1°60.0°
CCACBHB254.4°60.1°
CACN3'C3'168.9°179.9°
CACN3'HN'311.1°0.0°
CBCACO89.0°90.0°
CBCACN3'90.0°90.0°
CACBCGHB1125.3°120.0°
CACBCGHB2125.3°119.9°
CACBHB1HB2117.7°120.0°
CACBCGCD1123.9°89.9°
CACBCGCD253.6°90.0°
HACACO156.2°150.0°
HACACN3'24.8°30.0°
HACACBCG65.2°60.0°
HACACBHB1169.6°60.0°
HACACBHB260.1°179.9°
OCN3'C3'12.0°0.0°
OCN3'HN'3168.0°180.0°
CN3'C3'C4'86.6°151.9°
CN3'C3'HN'3180.0°180.0°
CN3'C3'C2'163.1°93.3°
CN3'C3'H3'44.7°29.3°
CGCBHB1HB2117.7°120.0°
CBCGCD1CD2177.6°179.9°
CBCGCD1CE1178.1°180.0°
CBCGCD1HD12.0°0.1°
CBCGCD2CE2177.3°179.8°
CBCGCD2HD22.8°0.0°
HB1CBCGCD1110.8°150.1°
HB1CBCGCD271.7°30.0°
HB2CBCGCD11.3°30.0°
HB2CBCGCD2178.9°150.1°
CGCD1CE1HD1180.0°179.9°
CD1CGCD2CE20.4°0.2°
CD1CGCD2HD2179.5°180.0°
CGCD1CE1CZ1.4°0.1°
CGCD1CE1HE1178.6°179.9°
CD2CGCD1CE10.5°0.1°
CD2CGCD1HD1179.5°180.0°
CGCD2CE2HD2180.0°179.8°
CGCD2CE2CZ0.4°0.5°
CGCD2CE2HE2179.6°179.9°
CD1CE1CZHE1180.0°180.0°
CD1CE1CZCE21.4°0.2°
CD1CE1CZOC179.0°180.0°
HD1CD1CE1CZ178.6°180.0°
HD1CD1CE1HE11.4°0.1°
CD2CE2CZCE10.5°0.5°
CD2CE2CZHE2180.0°179.5°
CD2CE2CZOC179.9°179.7°
HD2CD2CE2CZ179.5°179.7°
HD2CD2CE2HE20.4°0.3°
CE1CZCE2OC179.6°179.8°
CE1CZCE2HE2179.5°180.0°
CE1CZOCCM177.5°180.0°
HE1CE1CZCE2178.6°179.7°
HE1CE1CZOC1.1°0.0°
CE2CZOCCM2.1°0.3°
HE2CE2CZOC0.1°0.3°
CZOCCMHM1179.9°180.0°
CZOCCMHM254.7°60.0°
CZOCCMHM354.8°60.0°
OCCMHM1HM2125.3°120.0°
OCCMHM1HM3125.2°120.0°
OCCMHM2HM3115.0°119.9°
HM1CMHM2HM3114.9°120.1°
O5'C5'C4'H5'125.3°120.1°
O5'C5'C4'H5''125.3°120.0°
O5'C5'H5'H5''117.1°120.0°
O5'C5'C4'O4'41.5°61.4°
O5'C5'C4'C3'74.1°176.8°
O5'C5'C4'H4'165.9°60.8°
C4'C5'H5'H5''117.2°119.9°
C5'C4'O4'C3'123.0°119.2°
C5'C4'O4'H4'117.1°122.2°
C5'C4'C3'H4'117.2°122.4°
C5'C4'O4'C1'145.8°159.5°
C5'C4'C3'N3'81.2°98.5°
C5'C4'C3'C2'152.5°142.7°
C5'C4'C3'H3'36.0°24.0°
H5'C5'C4'O4'166.8°178.5°
H5'C5'C4'C3'51.1°63.1°
H5'C5'C4'H4'68.9°59.3°
H5''C5'C4'O4'83.7°58.6°
H5''C5'C4'C3'160.6°56.9°
H5''C5'C4'H4'40.6°179.2°
O4'C4'C3'H4'124.3°118.7°
O4'C4'C3'N3'160.3°142.6°
O4'C4'C3'C2'33.9°23.8°
O4'C4'C3'H3'82.5°94.9°
C4'O4'C1'C2'1.4°40.4°
C4'O4'C1'N9123.8°159.3°
C4'O4'C1'H1'117.6°78.4°
C3'C4'O4'C1'22.7°40.3°
C4'C3'N3'C2'110.3°114.8°
C4'C3'N3'H3'131.3°122.5°
C4'C3'C2'H3'131.5°118.7°
C4'C3'N3'HN'393.4°28.1°
C4'C3'C2'O2'81.7°118.9°
C4'C3'C2'C1'33.2°0.1°
C4'C3'C2'H2'158.1°118.5°
H4'C4'O4'C1'97.1°78.3°
H4'C4'C3'N3'36.0°23.9°
H4'C4'C3'C2'90.3°94.9°
H4'C4'C3'H3'153.3°146.4°
O4'C1'C2'C3'20.7°24.0°
O4'C1'C2'O2'98.7°142.7°
O4'C1'C2'N9119.6°119.0°
O4'C1'C2'H1'121.9°118.8°
O4'C1'C2'H2'141.5°94.7°
O4'C1'N9H1'121.9°122.3°
O4'C1'N9C826.2°25.4°
O4'C1'N9C4153.9°154.8°
N3'C3'C2'H3'119.4°122.6°
N3'C3'C2'O2'27.4°0.1°
N3'C3'C2'C1'142.3°118.7°
N3'C3'C2'H2'92.9°122.8°
C2'C3'N3'HN'317.0°86.7°
C3'C2'O2'C1'113.5°114.7°
C3'C2'O2'H2'121.5°122.6°
C3'C2'C1'H2'120.8°118.6°
C3'C2'O2'HO2'180.0°180.0°
C3'C2'C1'N998.9°142.9°
C3'C2'C1'H1'142.5°94.8°
H3'C3'N3'HN'3135.3°150.7°
H3'C3'C2'O2'146.8°122.5°
H3'C3'C2'C1'98.3°118.7°
H3'C3'C2'H2'26.5°0.1°
O2'C2'C1'H2'119.8°122.7°
O2'C2'C1'N9141.7°98.4°
O2'C2'C1'H1'23.1°23.9°
C1'C2'O2'HO2'66.5°65.3°
C2'C1'N9H1'119.0°122.3°
C2'C1'N9C892.9°90.0°
C2'C1'N9C487.1°89.7°
H2'C2'O2'HO2'58.6°57.4°
H2'C2'C1'N921.9°24.3°
H2'C2'C1'H1'96.7°146.5°
C1'N9C8C4180.0°179.8°
C1'N9C8N7178.8°180.0°
C1'N9C8H81.2°0.0°
C1'N9C4C5179.0°179.8°
C1'N9C4N30.6°0.6°
H1'C1'N9C8148.1°147.7°
H1'C1'N9C431.9°32.5°
N9C8N7H8180.0°180.0°
N9C8N7C50.8°0.0°
C8N9C4C51.0°0.3°
C8N9C4N3179.4°179.6°
C4N9C8N71.2°0.2°
C4N9C8H8178.9°179.8°
N9C4C5N70.6°0.3°
N9C4C5C6179.4°179.9°
N9C4C5N3179.6°179.4°
N9C4N3C2179.9°179.7°
C8N7C5C6180.0°179.9°
C8N7C5C40.1°0.2°
H8C8N7C5179.3°180.0°
N7C5C6C4180.0°179.7°
N7C5C6N60.1°0.1°
N7C5C6N1179.4°180.0°
N7C5C4N3179.8°179.7°
C5C6N6N1179.5°179.9°
C5C6N6C90.4°180.0°
C5C6N6C10179.8°66.1°
C5C6N1C20.3°0.1°
C6C5C4N30.2°0.5°
C4C5C6N6179.9°179.8°
C4C5C6N10.6°0.3°
C5C4N3C20.5°0.5°
C6N6C9C10179.5°113.9°
C6N6C9H91179.9°180.0°
C6N6C9H9254.7°59.9°
C6N6C9H9354.7°60.0°
C6N6C10H101179.9°180.0°
C6N6C10H10254.8°60.0°
C6N6C10H10354.7°60.0°
N6C6N1C2179.8°180.0°
N1C6N6C9179.1°0.1°
N1C6N6C100.3°113.7°
C6N1C2N30.6°0.1°
C6N1C2H2179.4°180.0°
N6C9H91H92125.4°120.0°
N6C9H91H93125.2°120.0°
N6C9H92H93113.3°120.0°
C9N6C10H1010.6°66.2°
C9N6C10H102125.8°53.8°
C9N6C10H103124.7°173.8°
C10N6C9H910.6°66.2°
C10N6C9H92124.7°173.8°
C10N6C9H93125.8°53.8°
N6C10H101H102125.2°120.0°
N6C10H101H103125.3°120.0°
N6C10H102H103113.5°120.0°
H91C9H92H93113.2°120.0°
H101C10H102H103113.6°119.9°
N1C2N3H2180.0°179.9°
N1C2N3C41.0°0.3°
H2C2N3C4179.1°179.8°

223790

PDB entries from 2024-08-14

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