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Summary Geometry Related PDB entries

Obsolete: PNL

PNL was replaced with CBG on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	doub	1.21Å	1.23Å
C1	C2	sing	1.51Å	1.53Å
C1	H1	sing	1.08Å	1.10Å
C2	C3	sing	1.53Å	1.52Å
C2	H21	sing	1.09Å	1.11Å
C2	H22	sing	1.09Å	1.11Å
C3	H31	sing	1.09Å	1.11Å
C3	H32	sing	1.09Å	1.11Å
C3	H33	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	121.2°	120.0°
O1	C1	H1	108.6°	120.0°
C2	C1	H1	130.2°	120.0°
C1	C2	C3	113.5°	109.5°
C1	C2	H21	110.7°	109.5°
C1	C2	H22	110.7°	109.5°
C3	C2	H21	110.8°	109.5°
C3	C2	H22	110.7°	109.4°
C2	C3	H31	113.5°	109.5°
C2	C3	H32	110.7°	109.4°
C2	C3	H33	110.7°	109.5°
H21	C2	H22	99.6°	109.4°
H31	C3	H32	110.8°	109.5°
H31	C3	H33	110.7°	109.5°
H32	C3	H33	99.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	H1	180.0°	180.0°
O1	C1	C2	C3	12.8°	120.1°
O1	C1	C2	H21	112.5°	0.0°
O1	C1	C2	H22	138.1°	120.0°
C1	C2	C3	H21	125.2°	120.1°
C1	C2	C3	H22	125.3°	120.0°
C1	C2	H21	H22	116.6°	120.0°
C1	C2	C3	H31	180.0°	180.0°
C1	C2	C3	H32	54.7°	60.0°
C1	C2	C3	H33	54.7°	60.0°
H1	C1	C2	C3	167.2°	60.0°
H1	C1	C2	H21	67.5°	180.0°
H1	C1	C2	H22	42.0°	60.0°
C3	C2	H21	H22	116.6°	119.9°
C2	C3	H31	H32	125.3°	120.0°
C2	C3	H31	H33	125.2°	120.0°
C2	C3	H32	H33	116.6°	120.0°
H21	C2	C3	H31	54.7°	59.9°
H21	C2	C3	H32	179.9°	60.1°
H21	C2	C3	H33	70.5°	180.0°
H22	C2	C3	H31	54.8°	60.0°
H22	C2	C3	H32	70.6°	180.0°
H22	C2	C3	H33	180.0°	60.0°
H31	C3	H32	H33	116.6°	120.0°

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PDB entries from 2024-10-16

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