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PND

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1N2sing1.37Å1.38Å
N1HN11sing1.01Å1.02Å
N1HN12sing1.01Å1.02Å
C1N2sing1.40Å1.49Å
C1C2doub1.39Å1.39ÅAromatic
C1C6sing1.39Å1.39ÅAromatic
N2HN2sing0.97Å1.02Å
C2C3sing1.38Å1.40ÅAromatic
C2H2sing1.08Å1.10Å
C3C4doub1.38Å1.41ÅAromatic
C3H3sing1.08Å1.10Å
C4N4sing1.48Å1.16Å
C4C5sing1.38Å1.40ÅAromatic
N4O3sing1.22Å1.44Å
N4O4doub1.22Å1.44Å
C5C6doub1.38Å1.40ÅAromatic
C5H5sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N2N1HN11126.8°106.7°
N2N1HN12106.2°106.8°
N1N2C1126.7°120.0°
N1N2HN2106.1°120.1°
HN11N1HN12106.1°106.7°
N2C1C2118.1°120.1°
N2C1C6120.4°120.0°
C1N2HN2106.2°119.9°
C2C1C6121.4°119.9°
C1C2C3123.7°119.9°
C1C2H2117.7°120.1°
C1C6C5116.6°119.9°
C1C6H6121.3°120.1°
C3C2H2118.5°120.0°
C2C3C4114.0°120.0°
C2C3H3122.6°120.0°
C4C3H3123.3°120.0°
C3C4N4116.3°119.9°
C3C4C5122.6°120.2°
N4C4C5121.1°119.9°
C4N4O3111.3°120.0°
C4N4O4121.2°120.0°
C4C5C6121.7°120.1°
C4C5H5119.1°120.0°
O3N4O4127.5°120.0°
C6C5H5119.2°119.9°
C5C6H6122.2°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N2N1HN11HN12125.3°113.9°
N1N2C1HN2125.2°180.0°
N1N2C1C22.1°180.0°
N1N2C1C6179.5°0.3°
HN11N1N2C1180.0°180.0°
HN11N1N2HN254.7°0.0°
HN12N1N2C154.8°66.2°
HN12N1N2HN270.5°113.8°
N2C1C2C6177.4°179.7°
N2C1C2C3177.5°180.0°
N2C1C2H22.5°0.0°
N2C1C6C5177.2°179.7°
N2C1C6H62.8°0.3°
C2C1N2HN2127.3°0.0°
C1C2C3H2180.0°180.0°
C1C2C3C40.5°0.0°
C1C2C3H3179.5°180.0°
C2C1C6C50.1°0.6°
C2C1C6H6179.9°180.0°
C6C1N2HN255.3°179.7°
C6C1C2C30.1°0.3°
C6C1C2H2179.9°179.7°
C1C6C5C40.1°0.7°
C1C6C5H6180.0°179.3°
C1C6C5H5179.8°179.7°
C2C3C4H3180.0°180.0°
C2C3C4N4179.1°180.0°
C2C3C4C50.7°0.0°
H2C2C3C4179.5°180.0°
H2C2C3H30.5°0.1°
C3C4N4C5179.8°179.9°
C3C4N4O3179.5°0.0°
C3C4N4O40.0°179.9°
C3C4C5C60.6°0.4°
C3C4C5H5179.4°180.0°
H3C3C4N41.0°0.1°
H3C3C4C5179.3°180.0°
C4N4O3O4179.5°180.0°
N4C4C5C6179.2°179.7°
N4C4C5H50.8°0.1°
C5C4N4O30.2°179.9°
C5C4N4O4179.8°0.0°
C4C5C6H5180.0°179.6°
C4C5C6H6179.8°180.0°
H5C5C6H60.2°0.3°

226262

PDB entries from 2024-10-16

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