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PMT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O11P'doub1.48Å1.61Å
P'O12sing1.61Å1.61Å
P'O13sing1.61Å1.48Å
P'O7'sing1.61Å1.61Å
O12HP'sing0.97Å0.95Å
O13H4sing0.97Å0.95Å
O7'C7'sing1.43Å1.43Å
C7'C6'sing1.53Å1.53Å
C7'H7'1sing1.09Å1.12Å
C7'H7'2sing1.09Å1.11Å
C6'C9'sing1.53Å1.53Å
C6'C8'sing1.53Å1.53Å
C6'C5'sing1.53Å1.53Å
C9'H9'1sing1.09Å1.12Å
C9'H9'2sing1.09Å1.12Å
C9'H9'3sing1.09Å1.11Å
C8'H8'1sing1.09Å1.12Å
C8'H8'2sing1.09Å1.12Å
C8'H8'3sing1.09Å1.12Å
C5'O5'sing1.43Å1.43Å
C5'C4'sing1.51Å1.53Å
C5'H1sing1.09Å1.11Å
O5'H5'sing0.97Å0.95Å
C4'O4'doub1.21Å1.23Å
C4'N3'sing1.35Å1.33Å
N3'C3'sing1.46Å1.47Å
N3'H3'sing0.97Å1.02Å
C3'C2'sing1.53Å1.53Å
C3'H3'1sing1.09Å1.12Å
C3'H3'2sing1.09Å1.11Å
C2'C1'sing1.51Å1.53Å
C2'H2'1sing1.09Å1.11Å
C2'H2'2sing1.09Å1.12Å
C1'O1'doub1.21Å1.23Å
C1'OP2sing1.34Å1.36Å
OP2Psing1.61Å1.61Å
POP1doub1.48Å1.61Å
POP3sing1.61Å1.48Å
PO5Bsing1.61Å1.60Å
OP3H3Psing0.97Å0.95Å
O5BC5Bsing1.43Å1.42Å
C5BC4Bsing1.53Å1.53Å
C5BH5'1sing1.09Å1.12Å
C5BH5''sing1.09Å1.12Å
C4BO4Bsing1.44Å1.43Å
C4BC3Bsing1.54Å1.53Å
C4BH4'sing1.09Å1.12Å
O4BC1Bsing1.44Å1.44Å
C3BO3'sing1.43Å1.43Å
C3BC2Bsing1.55Å1.53Å
C3BH3Bsing1.09Å1.12Å
O3'H3sing0.97Å0.95Å
C2BO2'sing1.43Å1.43Å
C2BC1Bsing1.55Å1.53Å
C2BH2'sing1.09Å1.12Å
O2'H2sing0.97Å0.95Å
C1BN1sing1.46Å1.48Å
C1BH1'sing1.09Å1.12Å
N1C6sing1.36Å1.40Å
N1C2sing1.35Å1.40Å
C6C5doub1.35Å1.39Å
C6H6sing1.08Å1.10Å
C5C4sing1.41Å1.39Å
C5H5sing1.08Å1.10Å
C4N4sing1.38Å1.33Å
C4N3doub1.33Å1.40Å
N4HN41sing0.97Å1.02Å
N4HN42sing0.97Å1.02Å
N3C2sing1.33Å1.40Å
C2O2doub1.22Å1.23Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O11P'O12106.0°109.5°
O11P'O13112.3°109.5°
O11P'O7'105.9°109.4°
O12P'O13111.9°109.5°
O12P'O7'106.5°109.5°
P'O12HP'106.0°106.8°
O13P'O7'113.8°109.5°
P'O13H4112.3°106.8°
P'O7'C7'119.1°106.8°
O7'C7'C6'111.1°109.4°
O7'C7'H7'1111.6°109.5°
O7'C7'H7'2111.6°109.5°
C6'C7'H7'1111.6°109.4°
C6'C7'H7'2111.6°109.5°
C7'C6'C9'109.2°109.5°
C7'C6'C8'108.8°109.5°
C7'C6'C5'108.3°109.5°
H7'1C7'H7'298.8°109.5°
C9'C6'C8'108.8°109.5°
C9'C6'C5'110.6°109.5°
C6'C9'H9'1112.3°109.5°
C6'C9'H9'2109.2°109.4°
C6'C9'H9'3112.3°109.5°
C8'C6'C5'111.2°109.4°
C6'C8'H8'1112.5°109.4°
C6'C8'H8'2108.8°109.5°
C6'C8'H8'3112.4°109.5°
C6'C5'O5'110.5°109.5°
C6'C5'C4'111.9°109.5°
C6'C5'H1106.7°109.5°
H9'1C9'H9'2112.3°109.5°
H9'1C9'H9'398.1°109.5°
H9'2C9'H9'3112.3°109.4°
H8'1C8'H8'2112.4°109.4°
H8'1C8'H8'398.0°109.5°
H8'2C8'H8'3112.5°109.5°
O5'C5'C4'108.2°109.4°
O5'C5'H1110.4°109.5°
C5'O5'H5'110.6°106.8°
C4'C5'H1109.1°109.5°
C5'C4'O4'121.1°120.0°
C5'C4'N3'114.0°120.0°
O4'C4'N3'124.9°120.0°
C4'N3'C3'122.5°120.0°
C4'N3'H3'113.6°120.0°
C3'N3'H3'123.9°120.0°
N3'C3'C2'109.5°109.5°
N3'C3'H3'1112.2°109.5°
N3'C3'H3'2112.2°109.4°
C2'C3'H3'1112.2°109.5°
C2'C3'H3'2112.2°109.5°
C3'C2'C1'110.1°109.5°
C3'C2'H2'1112.0°109.4°
C3'C2'H2'2111.9°109.4°
H3'1C3'H3'298.2°109.5°
C1'C2'H2'1112.0°109.5°
C1'C2'H2'2112.0°109.5°
C2'C1'O1'121.2°120.0°
C2'C1'OP2113.3°120.0°
H2'1C2'H2'298.5°109.5°
O1'C1'OP2125.5°120.0°
C1'OP2P115.9°120.0°
OP2POP1103.2°109.5°
OP2POP3115.8°109.5°
OP2PO5B107.2°109.4°
OP1POP3113.3°109.5°
OP1PO5B100.3°109.5°
OP3PO5B115.3°109.4°
POP3H3P115.8°106.9°
PO5BC5B121.4°106.8°
O5BC5BC4B109.3°109.5°
O5BC5BH5'1112.3°109.5°
O5BC5BH5''112.3°109.5°
C4BC5BH5'1112.3°109.4°
C4BC5BH5''112.3°109.4°
C5BC4BO4B107.5°109.9°
C5BC4BC3B111.8°109.9°
C5BC4BH4'107.4°109.9°
H5'1C5BH5''98.2°109.5°
O4BC4BC3B103.0°107.4°
O4BC4BH4'115.7°109.9°
C4BO4BC1B107.3°107.0°
C3BC4BH4'111.6°109.9°
C4BC3BO3'109.9°110.8°
C4BC3BC2B99.7°104.0°
C4BC3BH3B115.3°110.5°
O4BC1BC2B107.9°103.5°
O4BC1BN1108.7°110.6°
O4BC1BH1'112.9°110.6°
O3'C3BC2B109.4°110.5°
O3'C3BH3B106.6°110.5°
C3BO3'H3109.9°106.8°
C2BC3BH3B115.8°110.4°
C3BC2BO2'109.5°110.8°
C3BC2BC1B100.4°102.1°
C3BC2BH2'115.0°111.0°
O2'C2BC1B109.2°110.9°
O2'C2BH2'107.1°110.8°
C2BO2'H2109.5°106.8°
C1BC2BH2'115.4°111.0°
C2BC1BN1114.4°110.7°
C2BC1BH1'107.0°110.6°
N1C1BH1'106.2°110.6°
C1BN1C6121.4°119.8°
C1BN1C2118.1°119.9°
C6N1C2120.3°120.3°
N1C6C5120.4°119.3°
N1C6H6120.2°120.4°
N1C2N3119.0°121.1°
N1C2O2120.7°119.4°
C5C6H6119.4°120.4°
C6C5C4119.4°119.0°
C6C5H5120.3°120.5°
C4C5H5120.3°120.5°
C5C4N4120.4°120.2°
C5C4N3120.6°119.6°
N4C4N3119.1°120.2°
C4N4HN41108.3°120.0°
C4N4HN42120.3°120.0°
C4N3C2120.3°120.7°
HN41N4HN42108.3°120.0°
N3C2O2120.2°119.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O11P'O12O13122.7°120.0°
O11P'O12O7'112.4°120.0°
O11P'O13O7'120.3°120.0°
O11P'O12HP'180.0°60.0°
O11P'O13H4180.0°179.9°
O11P'O7'C7'56.7°55.0°
O12P'O13O7'120.7°120.0°
O12P'O13H461.0°60.0°
O12P'O7'C7'55.8°175.0°
O13P'O12HP'57.3°60.0°
O13P'O7'C7'179.5°65.0°
O7'P'O12HP'67.6°180.0°
O7'P'O13H459.7°60.0°
P'O7'C7'C6'138.3°180.0°
P'O7'C7'H7'196.5°60.0°
P'O7'C7'H7'213.0°60.0°
O7'C7'C6'H7'1125.3°120.0°
O7'C7'C6'H7'2125.3°120.0°
O7'C7'H7'1H7'2117.5°120.1°
O7'C7'C6'C9'53.9°60.0°
O7'C7'C6'C8'64.7°60.0°
O7'C7'C6'C5'174.4°180.0°
C6'C7'H7'1H7'2117.5°120.0°
C7'C6'C9'C8'118.6°120.0°
C7'C6'C9'C5'119.0°120.0°
C7'C6'C8'C5'119.1°120.0°
C7'C6'C9'H9'154.7°172.7°
C7'C6'C9'H9'2180.0°52.7°
C7'C6'C9'H9'354.7°67.3°
C7'C6'C8'H8'154.8°56.5°
C7'C6'C8'H8'2180.0°63.4°
C7'C6'C8'H8'354.7°176.5°
C7'C6'C5'O5'66.0°65.4°
C7'C6'C5'C4'173.3°54.5°
C7'C6'C5'H154.1°174.5°
H7'1C7'C6'C9'179.2°60.0°
H7'1C7'C6'C8'60.6°180.0°
H7'1C7'C6'C5'60.3°60.0°
H7'2C7'C6'C9'71.3°180.0°
H7'2C7'C6'C8'170.1°60.0°
H7'2C7'C6'C5'49.1°60.0°
C9'C6'C8'C5'122.0°120.0°
C6'C9'H9'1H9'2123.5°120.0°
C6'C9'H9'1H9'3118.2°120.0°
C6'C9'H9'2H9'3125.3°120.0°
C9'C6'C8'H8'164.1°63.6°
C9'C6'C8'H8'261.1°176.5°
C9'C6'C8'H8'3173.6°56.5°
C9'C6'C5'O5'174.4°174.5°
C9'C6'C5'C4'53.7°65.5°
C9'C6'C5'H165.5°54.5°
C8'C6'C9'H9'1173.3°67.3°
C8'C6'C9'H9'261.4°172.7°
C8'C6'C9'H9'363.8°52.7°
C6'C8'H8'1H8'2123.2°119.9°
C6'C8'H8'1H8'3118.4°120.1°
C6'C8'H8'2H8'3125.2°120.1°
C8'C6'C5'O5'53.4°54.6°
C8'C6'C5'C4'67.3°174.5°
C8'C6'C5'H1173.5°65.5°
C5'C6'C9'H9'164.3°52.7°
C5'C6'C9'H9'261.0°67.3°
C5'C6'C9'H9'3173.8°172.7°
C5'C6'C8'H8'1173.9°176.4°
C5'C6'C8'H8'260.9°56.5°
C5'C6'C8'H8'364.4°63.5°
C6'C5'O5'C4'122.8°120.0°
C6'C5'O5'H1117.8°120.0°
C6'C5'C4'H1117.8°120.0°
C6'C5'O5'H5'180.0°60.0°
C6'C5'C4'O4'83.9°105.9°
C6'C5'C4'N3'96.6°74.0°
H9'1C9'H9'2H9'3109.5°120.0°
H8'1C8'H8'2H8'3109.5°120.0°
O5'C5'C4'H1120.2°120.0°
O5'C5'C4'O4'38.1°14.1°
O5'C5'C4'N3'141.3°166.0°
C4'C5'O5'H5'57.2°60.0°
C5'C4'O4'N3'179.4°179.9°
C5'C4'N3'C3'178.7°178.8°
C5'C4'N3'H3'1.4°1.2°
H1C5'O5'H5'62.2°180.0°
H1C5'C4'O4'158.3°134.1°
H1C5'C4'N3'21.2°46.0°
O4'C4'N3'C3'1.9°1.3°
O4'C4'N3'H3'178.1°178.7°
C4'N3'C3'H3'180.0°179.9°
C4'N3'C3'C2'104.4°180.0°
C4'N3'C3'H3'120.9°59.9°
C4'N3'C3'H3'2130.4°60.1°
N3'C3'C2'H3'1125.3°120.1°
N3'C3'C2'H3'2125.2°120.0°
N3'C3'H3'1H3'2118.1°120.0°
N3'C3'C2'C1'171.4°180.0°
N3'C3'C2'H2'163.4°59.9°
N3'C3'C2'H2'246.1°60.0°
H3'N3'C3'C2'75.7°0.0°
H3'N3'C3'H3'1159.1°120.0°
H3'N3'C3'H3'249.6°120.0°
C2'C3'H3'1H3'2118.1°120.0°
C3'C2'C1'H2'1125.2°120.0°
C3'C2'C1'H2'2125.2°120.0°
C3'C2'H2'1H2'2117.9°119.9°
C3'C2'C1'O1'133.7°0.0°
C3'C2'C1'OP244.3°180.0°
H3'1C3'C2'C1'46.1°60.0°
H3'1C3'C2'H2'1171.4°180.0°
H3'1C3'C2'H2'279.1°60.0°
H3'2C3'C2'C1'63.4°60.0°
H3'2C3'C2'H2'161.9°60.0°
H3'2C3'C2'H2'2171.4°180.0°
C1'C2'H2'1H2'2117.9°120.0°
C2'C1'O1'OP2177.7°180.0°
C2'C1'OP2P178.3°180.0°
H2'1C2'C1'O1'8.5°120.0°
H2'1C2'C1'OP2169.5°60.0°
H2'2C2'C1'O1'101.1°120.0°
H2'2C2'C1'OP280.9°60.0°
O1'C1'OP2P3.8°0.0°
C1'OP2POP1146.1°55.0°
C1'OP2POP321.7°65.0°
C1'OP2PO5B108.6°175.0°
OP2POP1OP3126.0°120.1°
OP2POP1O5B110.5°120.0°
OP2POP3O5B126.3°120.0°
OP2POP3H3P180.0°60.0°
OP2PO5BC5B101.4°175.0°
OP1POP3O5B114.8°120.0°
OP1POP3H3P61.1°180.0°
OP1PO5BC5B151.2°55.0°
OP3PO5BC5B29.1°65.0°
O5BPOP3H3P53.7°60.0°
PO5BC5BC4B134.4°180.0°
PO5BC5BH5'19.2°60.0°
PO5BC5BH5''100.3°60.0°
O5BC5BC4BH5'1125.2°120.0°
O5BC5BC4BH5''125.3°120.0°
O5BC5BH5'1H5''118.2°120.1°
O5BC5BC4BO4B176.6°66.7°
O5BC5BC4BC3B64.3°175.3°
O5BC5BC4BH4'58.4°54.3°
C4BC5BH5'1H5''118.2°119.9°
C5BC4BO4BC3B118.2°119.5°
C5BC4BO4BH4'119.9°121.0°
C5BC4BC3BH4'120.3°121.0°
C5BC4BO4BC1B85.1°146.0°
C5BC4BC3BO3'176.3°119.9°
C5BC4BC3BC2B68.9°121.4°
C5BC4BC3BH3B55.8°2.9°
H5'1C5BC4BO4B51.4°53.3°
H5'1C5BC4BC3B60.9°64.7°
H5'1C5BC4BH4'176.4°174.3°
H5''C5BC4BO4B58.1°173.3°
H5''C5BC4BC3B170.4°55.3°
H5''C5BC4BH4'66.9°65.7°
O4BC4BC3BH4'124.7°119.5°
O4BC4BC3BO3'68.7°120.6°
O4BC4BC3BC2B46.2°1.9°
O4BC4BC3BH3B170.9°116.6°
C4BO4BC1BC2B6.7°40.1°
C4BO4BC1BN1117.8°158.7°
C4BO4BC1BH1'124.7°78.4°
C3BC4BO4BC1B33.1°26.4°
C4BC3BO3'C2B108.5°114.8°
C4BC3BO3'H3B125.6°122.7°
C4BC3BC2BH3B124.3°118.5°
C4BC3BO3'H3180.0°176.2°
C4BC3BC2BO2'155.1°139.2°
C4BC3BC2BC1B40.3°21.1°
C4BC3BC2BH2'84.2°97.3°
H4'C4BO4BC1B155.1°93.1°
H4'C4BC3BO3'56.0°1.2°
H4'C4BC3BC2B170.8°117.6°
H4'C4BC3BH3B64.5°123.9°
O4BC1BC2BC3B22.2°37.2°
O4BC1BC2BO2'137.3°155.3°
O4BC1BC2BN1121.0°118.5°
O4BC1BC2BH1'121.7°118.5°
O4BC1BC2BH2'102.1°81.2°
O4BC1BN1H1'121.7°122.9°
O4BC1BN1C669.8°126.4°
O4BC1BN1C2105.5°53.3°
O3'C3BC2BH3B120.4°122.5°
O3'C3BC2BO2'39.8°20.2°
O3'C3BC2BC1B75.0°97.9°
O3'C3BC2BH2'160.5°143.8°
C2BC3BO3'H371.5°61.4°
C3BC2BO2'C1B109.1°112.6°
C3BC2BO2'H2'125.4°123.7°
C3BC2BC1BH2'124.3°118.4°
C3BC2BO2'H2180.0°67.4°
C3BC2BC1BN1143.2°155.7°
C3BC2BC1BH1'99.5°81.3°
H3BC3BO3'H354.4°61.1°
H3BC3BC2BO2'80.6°102.3°
H3BC3BC2BC1B164.6°139.6°
H3BC3BC2BH2'40.1°21.3°
O2'C2BC1BH2'120.6°123.6°
O2'C2BC1BN1101.7°86.2°
O2'C2BC1BH1'15.6°36.7°
C1BC2BO2'H270.9°180.0°
C2BC1BN1H1'117.8°123.0°
C2BC1BN1C650.8°119.5°
C2BC1BN1C2133.9°60.8°
H2'C2BO2'H254.7°56.3°
H2'C2BC1BN118.9°37.3°
H2'C2BC1BH1'136.2°160.3°
C1BN1C6C2175.2°179.7°
C1BN1C6C5174.9°180.0°
C1BN1C6H65.1°0.1°
C1BN1C2N3175.1°179.8°
C1BN1C2O22.1°0.2°
H1'C1BN1C6168.6°3.5°
H1'C1BN1C216.2°176.2°
N1C6C5H6180.0°179.9°
N1C6C5C40.1°0.1°
N1C6C5H5179.9°180.0°
C6N1C2N30.2°0.5°
C6N1C2O2177.4°179.9°
C2N1C6C50.3°0.3°
C2N1C6H6179.7°179.8°
N1C2N3C40.1°0.5°
N1C2N3O2177.2°179.5°
C6C5C4H5180.0°179.9°
C6C5C4N4179.8°180.0°
C6C5C4N30.2°0.0°
H6C6C5C4179.9°180.0°
H6C6C5H50.1°0.1°
C5C4N4N3180.0°180.0°
C5C4N4HN4154.7°0.0°
C5C4N4HN42180.0°180.0°
C5C4N3C20.3°0.2°
H5C5C4N40.2°0.0°
H5C5C4N3179.8°180.0°
C4N4HN41HN42132.1°179.9°
N4C4N3C2179.7°179.8°
N3C4N4HN41125.3°180.0°
N3C4N4HN420.0°0.1°
C4N3C2O2177.1°180.0°

222415

PDB entries from 2024-07-10

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