PL5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| PBB | OAI | sing | 1.61Å | 1.57Å | |
| OAI | HOAI | sing | 0.97Å | 0.95Å | |
| OAE | PBB | doub | 1.48Å | 1.50Å | |
| OAS | PBB | sing | 1.61Å | 1.60Å | |
| PBB | OAJ | sing | 1.61Å | 1.59Å | |
| OAJ | HOAJ | sing | 0.97Å | 0.95Å | |
| CAP | OAS | sing | 1.43Å | 1.44Å | |
| CAW | CAP | sing | 1.51Å | 1.53Å | |
| CAP | HAP | sing | 1.09Å | 1.10Å | |
| CAP | HAPA | sing | 1.09Å | 1.10Å | |
| CAL | CAW | doub | 1.38Å | 1.40Å | Aromatic |
| CAW | CAY | sing | 1.40Å | 1.40Å | Aromatic |
| NAR | CAL | sing | 1.32Å | 1.33Å | Aromatic |
| CAL | HAL | sing | 1.08Å | 1.08Å | |
| NAR | CAV | doub | 1.32Å | 1.34Å | Aromatic |
| CAA | CAV | sing | 1.51Å | 1.53Å | |
| CAV | CAX | sing | 1.39Å | 1.39Å | Aromatic |
| CAA | HAA | sing | 1.09Å | 1.10Å | |
| CAA | HAAA | sing | 1.09Å | 1.10Å | |
| CAA | HAAB | sing | 1.09Å | 1.10Å | |
| CAX | CAY | doub | 1.40Å | 1.40Å | Aromatic |
| CAX | OAH | sing | 1.36Å | 1.35Å | |
| OAH | HOAH | sing | 0.97Å | 0.95Å | |
| CAY | CAK | sing | 1.48Å | 1.41Å | |
| CAK | NAQ | doub | 1.29Å | 1.33Å | |
| CAK | HAK | sing | 1.08Å | 1.08Å | |
| NAQ | CBA | sing | 1.46Å | 1.48Å | |
| CAO | CBA | sing | 1.53Å | 1.55Å | |
| CBA | CAU | sing | 1.51Å | 1.53Å | |
| CBA | HBA | sing | 1.09Å | 1.10Å | |
| OAG | CAU | doub | 1.21Å | 1.25Å | |
| CAU | OAD | sing | 1.34Å | 1.26Å | |
| OAD | HOAD | sing | 0.97Å | 0.95Å | |
| CAM | CAO | sing | 1.53Å | 1.53Å | |
| CAO | HAO | sing | 1.09Å | 1.10Å | |
| CAO | HAOA | sing | 1.09Å | 1.10Å | |
| CB | CAM | sing | 1.53Å | 1.54Å | |
| CAM | HAM | sing | 1.09Å | 1.10Å | |
| CAM | HAMA | sing | 1.09Å | 1.10Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CB | HBB | sing | 1.09Å | 1.10Å | |
| C | CA | sing | 1.51Å | 1.53Å | |
| N | CA | sing | 1.47Å | 1.48Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| OXT | C | doub | 1.21Å | 1.25Å | |
| O | C | sing | 1.34Å | 1.25Å | |
| O | HO | sing | 0.97Å | 0.95Å | |
| N | HN | sing | 1.01Å | 1.00Å | |
| N | HNA | sing | 1.01Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| PBB | OAI | HOAI | 109.5° | 114.0° |
| OAI | PBB | OAE | 112.2° | 109.5° |
| OAI | PBB | OAS | 106.7° | 109.5° |
| OAI | PBB | OAJ | 108.5° | 109.5° |
| OAE | PBB | OAS | 110.0° | 109.4° |
| OAE | PBB | OAJ | 110.4° | 109.5° |
| OAS | PBB | OAJ | 108.9° | 109.5° |
| PBB | OAS | CAP | 121.3° | 123.0° |
| PBB | OAJ | HOAJ | 109.5° | 114.0° |
| OAS | CAP | CAW | 111.1° | 109.5° |
| OAS | CAP | HAP | 108.9° | 109.5° |
| OAS | CAP | HAPA | 108.6° | 109.5° |
| CAW | CAP | HAP | 108.9° | 109.5° |
| CAW | CAP | HAPA | 108.6° | 109.5° |
| CAP | CAW | CAL | 117.7° | 120.5° |
| CAP | CAW | CAY | 124.0° | 120.5° |
| HAP | CAP | HAPA | 110.7° | 109.5° |
| CAL | CAW | CAY | 118.3° | 119.0° |
| CAW | CAL | NAR | 122.1° | 121.1° |
| CAW | CAL | HAL | 119.0° | 119.4° |
| CAW | CAY | CAX | 118.0° | 118.1° |
| CAW | CAY | CAK | 122.8° | 121.0° |
| NAR | CAL | HAL | 119.0° | 119.5° |
| CAL | NAR | CAV | 120.8° | 122.2° |
| NAR | CAV | CAA | 119.1° | 119.6° |
| NAR | CAV | CAX | 120.3° | 120.8° |
| CAA | CAV | CAX | 120.5° | 119.6° |
| CAV | CAA | HAA | 109.5° | 109.5° |
| CAV | CAA | HAAA | 109.4° | 109.5° |
| CAV | CAA | HAAB | 109.5° | 109.5° |
| CAV | CAX | CAY | 120.5° | 118.9° |
| CAV | CAX | OAH | 119.0° | 120.6° |
| HAA | CAA | HAAA | 109.5° | 109.5° |
| HAA | CAA | HAAB | 109.4° | 109.5° |
| HAAA | CAA | HAAB | 109.5° | 109.5° |
| CAY | CAX | OAH | 120.5° | 120.5° |
| CAX | CAY | CAK | 119.1° | 120.9° |
| CAX | OAH | HOAH | 109.5° | 114.0° |
| CAY | CAK | NAQ | 119.9° | 120.1° |
| CAY | CAK | HAK | 120.0° | 120.0° |
| NAQ | CAK | HAK | 120.0° | 119.9° |
| CAK | NAQ | CBA | 125.2° | 120.0° |
| NAQ | CBA | CAO | 114.3° | 109.5° |
| NAQ | CBA | CAU | 108.9° | 109.5° |
| NAQ | CBA | HBA | 107.7° | 109.5° |
| CAO | CBA | CAU | 112.6° | 109.5° |
| CAO | CBA | HBA | 103.6° | 109.4° |
| CBA | CAO | CAM | 112.6° | 109.5° |
| CBA | CAO | HAO | 108.4° | 109.4° |
| CBA | CAO | HAOA | 107.7° | 109.5° |
| CAU | CBA | HBA | 109.5° | 109.5° |
| CBA | CAU | OAG | 118.0° | 120.0° |
| CBA | CAU | OAD | 117.0° | 120.0° |
| OAG | CAU | OAD | 124.9° | 120.0° |
| CAU | OAD | HOAD | 109.5° | 117.0° |
| CAM | CAO | HAO | 108.4° | 109.5° |
| CAM | CAO | HAOA | 107.7° | 109.5° |
| CAO | CAM | CB | 110.8° | 109.5° |
| CAO | CAM | HAM | 109.1° | 109.5° |
| CAO | CAM | HAMA | 108.8° | 109.5° |
| HAO | CAO | HAOA | 112.0° | 109.5° |
| CB | CAM | HAM | 109.0° | 109.5° |
| CB | CAM | HAMA | 108.7° | 109.5° |
| CAM | CB | CA | 112.0° | 109.5° |
| CAM | CB | HB | 108.6° | 109.5° |
| CAM | CB | HBB | 108.1° | 109.5° |
| HAM | CAM | HAMA | 110.5° | 109.4° |
| CA | CB | HB | 108.6° | 109.4° |
| CA | CB | HBB | 108.1° | 109.5° |
| CB | CA | C | 108.3° | 109.5° |
| CB | CA | N | 108.3° | 109.5° |
| CB | CA | HA | 111.3° | 109.5° |
| HB | CB | HBB | 111.4° | 109.4° |
| C | CA | N | 110.3° | 109.4° |
| C | CA | HA | 109.4° | 109.4° |
| CA | C | OXT | 116.6° | 120.0° |
| CA | C | O | 116.9° | 120.0° |
| N | CA | HA | 109.3° | 109.5° |
| CA | N | HN | 109.5° | 111.0° |
| CA | N | HNA | 109.5° | 111.0° |
| OXT | C | O | 126.5° | 120.0° |
| C | O | HO | 109.5° | 116.9° |
| HN | N | HNA | 109.5° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OAI | PBB | OAE | OAS | 118.7° | 120.0° |
| OAI | PBB | OAE | OAJ | 121.1° | 120.1° |
| OAI | PBB | OAS | OAJ | 116.9° | 120.0° |
| OAI | PBB | OAJ | HOAJ | 155.8° | 60.0° |
| OAI | PBB | OAS | CAP | 81.5° | 175.0° |
| HOAI | OAI | PBB | OAE | 7.7° | 60.0° |
| HOAI | OAI | PBB | OAS | 112.9° | 179.9° |
| HOAI | OAI | PBB | OAJ | 129.9° | 60.1° |
| OAE | PBB | OAS | OAJ | 121.1° | 120.0° |
| OAE | PBB | OAJ | HOAJ | 32.4° | 180.0° |
| OAE | PBB | OAS | CAP | 40.5° | 55.0° |
| OAS | PBB | OAJ | HOAJ | 88.4° | 60.0° |
| PBB | OAS | CAP | CAW | 177.6° | 180.0° |
| PBB | OAS | CAP | HAP | 62.4° | 60.0° |
| PBB | OAS | CAP | HAPA | 58.2° | 60.0° |
| OAJ | PBB | OAS | CAP | 161.6° | 65.0° |
| OAS | CAP | CAW | HAP | 120.0° | 120.0° |
| OAS | CAP | CAW | HAPA | 119.3° | 120.0° |
| OAS | CAP | HAP | HAPA | 119.3° | 120.0° |
| OAS | CAP | CAW | CAL | 66.7° | 0.3° |
| OAS | CAP | CAW | CAY | 114.4° | 180.0° |
| CAW | CAP | HAP | HAPA | 119.4° | 120.0° |
| CAP | CAW | CAL | CAY | 178.9° | 179.7° |
| CAP | CAW | CAL | NAR | 179.5° | 180.0° |
| CAP | CAW | CAL | HAL | 0.5° | 0.1° |
| CAP | CAW | CAY | CAX | 179.4° | 179.8° |
| CAP | CAW | CAY | CAK | 2.9° | 0.0° |
| HAP | CAP | CAW | CAL | 173.3° | 119.7° |
| HAP | CAP | CAW | CAY | 5.6° | 60.0° |
| HAPA | CAP | CAW | CAL | 52.6° | 120.3° |
| HAPA | CAP | CAW | CAY | 126.2° | 60.0° |
| CAW | CAL | NAR | HAL | 180.0° | 179.9° |
| CAW | CAL | NAR | CAV | 0.8° | 0.1° |
| CAL | CAW | CAY | CAX | 1.8° | 0.5° |
| CAL | CAW | CAY | CAK | 178.2° | 179.8° |
| CAY | CAW | CAL | NAR | 0.6° | 0.3° |
| CAY | CAW | CAL | HAL | 179.4° | 179.8° |
| CAW | CAY | CAX | CAV | 1.7° | 0.4° |
| CAW | CAY | CAX | CAK | 176.6° | 179.8° |
| CAW | CAY | CAX | OAH | 179.1° | 179.8° |
| CAW | CAY | CAK | NAQ | 148.6° | 180.0° |
| CAW | CAY | CAK | HAK | 31.4° | 0.0° |
| CAL | NAR | CAV | CAA | 179.8° | 180.0° |
| CAL | NAR | CAV | CAX | 0.8° | 0.0° |
| HAL | CAL | NAR | CAV | 179.2° | 180.0° |
| NAR | CAV | CAA | CAX | 179.4° | 180.0° |
| NAR | CAV | CAA | HAA | 144.5° | 90.0° |
| NAR | CAV | CAA | HAAA | 95.5° | 150.0° |
| NAR | CAV | CAA | HAAB | 24.5° | 30.0° |
| NAR | CAV | CAX | CAY | 0.4° | 0.2° |
| NAR | CAV | CAX | OAH | 179.6° | 180.0° |
| CAV | CAA | HAA | HAAA | 120.0° | 120.0° |
| CAV | CAA | HAA | HAAB | 120.0° | 120.0° |
| CAV | CAA | HAAA | HAAB | 120.0° | 120.0° |
| CAA | CAV | CAX | CAY | 178.9° | 179.8° |
| CAA | CAV | CAX | OAH | 0.2° | 0.0° |
| CAX | CAV | CAA | HAA | 36.1° | 90.0° |
| CAX | CAV | CAA | HAAA | 83.9° | 30.0° |
| CAX | CAV | CAA | HAAB | 156.1° | 150.0° |
| CAV | CAX | CAY | OAH | 179.2° | 179.8° |
| CAV | CAX | OAH | HOAH | 127.5° | 90.0° |
| CAV | CAX | CAY | CAK | 178.3° | 179.8° |
| HAA | CAA | HAAA | HAAB | 120.0° | 120.0° |
| CAY | CAX | OAH | HOAH | 53.3° | 89.8° |
| CAX | CAY | CAK | NAQ | 35.0° | 0.2° |
| CAX | CAY | CAK | HAK | 145.1° | 179.7° |
| OAH | CAX | CAY | CAK | 2.5° | 0.0° |
| CAY | CAK | NAQ | HAK | 180.0° | 180.0° |
| CAY | CAK | NAQ | CBA | 170.3° | 180.0° |
| CAK | NAQ | CBA | CAO | 62.8° | 120.0° |
| CAK | NAQ | CBA | CAU | 170.3° | 120.0° |
| CAK | NAQ | CBA | HBA | 51.7° | 0.0° |
| HAK | CAK | NAQ | CBA | 9.7° | 0.0° |
| NAQ | CBA | CAO | CAU | 125.0° | 120.0° |
| NAQ | CBA | CAO | HBA | 116.8° | 120.0° |
| NAQ | CBA | CAU | HBA | 117.5° | 120.0° |
| NAQ | CBA | CAU | OAG | 2.2° | 0.0° |
| NAQ | CBA | CAU | OAD | 174.2° | 180.0° |
| NAQ | CBA | CAO | CAM | 76.2° | 65.0° |
| NAQ | CBA | CAO | HAO | 163.8° | 55.0° |
| NAQ | CBA | CAO | HAOA | 42.5° | 175.0° |
| CAO | CBA | CAU | HBA | 114.6° | 120.0° |
| CAO | CBA | CAU | OAG | 130.0° | 120.0° |
| CAO | CBA | CAU | OAD | 46.4° | 60.0° |
| CBA | CAO | CAM | HAO | 120.0° | 120.0° |
| CBA | CAO | CAM | HAOA | 118.7° | 120.0° |
| CBA | CAO | HAO | HAOA | 118.8° | 120.0° |
| CBA | CAO | CAM | CB | 178.4° | 180.0° |
| CBA | CAO | CAM | HAM | 58.4° | 60.0° |
| CBA | CAO | CAM | HAMA | 62.2° | 59.9° |
| CBA | CAU | OAG | OAD | 176.1° | 180.0° |
| CBA | CAU | OAD | HOAD | 176.1° | 180.0° |
| CAU | CBA | CAO | CAM | 48.8° | 175.0° |
| CAU | CBA | CAO | HAO | 71.2° | 65.0° |
| CAU | CBA | CAO | HAOA | 167.4° | 55.0° |
| HBA | CBA | CAU | OAG | 115.3° | 120.0° |
| HBA | CBA | CAU | OAD | 68.3° | 60.0° |
| HBA | CBA | CAO | CAM | 167.0° | 55.0° |
| HBA | CBA | CAO | HAO | 47.0° | 175.0° |
| HBA | CBA | CAO | HAOA | 74.4° | 65.0° |
| OAG | CAU | OAD | HOAD | 0.0° | 0.1° |
| CAM | CAO | HAO | HAOA | 118.7° | 120.0° |
| CAO | CAM | CB | HAM | 120.0° | 120.0° |
| CAO | CAM | CB | HAMA | 119.5° | 120.1° |
| CAO | CAM | HAM | HAMA | 119.5° | 120.0° |
| CAO | CAM | CB | CA | 70.3° | 180.0° |
| CAO | CAM | CB | HB | 169.7° | 60.0° |
| CAO | CAM | CB | HBB | 48.7° | 59.9° |
| HAO | CAO | CAM | CB | 61.6° | 60.0° |
| HAO | CAO | CAM | HAM | 178.4° | 179.9° |
| HAO | CAO | CAM | HAMA | 57.8° | 60.0° |
| HAOA | CAO | CAM | CB | 59.7° | 60.0° |
| HAOA | CAO | CAM | HAM | 60.3° | 60.0° |
| HAOA | CAO | CAM | HAMA | 179.2° | 180.0° |
| CB | CAM | HAM | HAMA | 119.4° | 120.0° |
| CAM | CB | CA | HB | 120.0° | 120.0° |
| CAM | CB | CA | HBB | 118.9° | 120.1° |
| CAM | CB | HB | HBB | 119.0° | 120.0° |
| CAM | CB | CA | C | 53.0° | 175.0° |
| CAM | CB | CA | N | 172.5° | 65.0° |
| CAM | CB | CA | HA | 67.2° | 55.0° |
| HAM | CAM | CB | CA | 49.7° | 60.0° |
| HAM | CAM | CB | HB | 70.3° | 180.0° |
| HAM | CAM | CB | HBB | 168.7° | 60.1° |
| HAMA | CAM | CB | CA | 170.3° | 59.9° |
| HAMA | CAM | CB | HB | 50.3° | 60.0° |
| HAMA | CAM | CB | HBB | 70.8° | 180.0° |
| CA | CB | HB | HBB | 119.0° | 120.0° |
| CB | CA | C | N | 118.3° | 120.0° |
| CB | CA | C | HA | 121.4° | 120.0° |
| CB | CA | N | HA | 121.4° | 120.1° |
| CB | CA | C | OXT | 73.3° | 100.0° |
| CB | CA | C | O | 104.4° | 80.0° |
| CB | CA | N | HN | 119.1° | 60.0° |
| CB | CA | N | HNA | 0.9° | 63.9° |
| HB | CB | CA | C | 67.0° | 55.0° |
| HB | CB | CA | N | 52.6° | 175.0° |
| HB | CB | CA | HA | 172.8° | 65.0° |
| HBB | CB | CA | C | 171.9° | 65.0° |
| HBB | CB | CA | N | 68.5° | 55.0° |
| HBB | CB | CA | HA | 51.7° | 175.1° |
| C | CA | N | HA | 120.3° | 119.9° |
| CA | C | OXT | O | 177.5° | 180.0° |
| CA | C | O | HO | 177.5° | 180.0° |
| C | CA | N | HN | 0.8° | 60.0° |
| C | CA | N | HNA | 119.2° | 176.1° |
| N | CA | C | OXT | 45.0° | 20.0° |
| N | CA | C | O | 137.2° | 160.0° |
| CA | N | HN | HNA | 120.0° | 123.9° |
| HA | CA | C | OXT | 165.3° | 140.0° |
| HA | CA | C | O | 17.0° | 40.0° |
| HA | CA | N | HN | 119.4° | 180.0° |
| HA | CA | N | HNA | 120.5° | 56.1° |
| OXT | C | O | HO | 0.0° | 0.0° |
