PKJ
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
S19 | C20 | sing | 1.77Å | 1.75Å | Aromatic |
S19 | C18 | sing | 1.77Å | 1.71Å | Aromatic |
C20 | C21 | doub | 1.34Å | 1.33Å | Aromatic |
C21 | C23 | sing | 1.48Å | 1.47Å | |
C21 | N22 | sing | 1.38Å | 1.37Å | Aromatic |
C18 | N22 | sing | 1.37Å | 1.34Å | Aromatic |
C18 | N17 | doub | 1.31Å | 1.31Å | Aromatic |
C24 | C23 | doub | 1.40Å | 1.38Å | Aromatic |
C24 | C25 | sing | 1.38Å | 1.38Å | Aromatic |
C23 | C28 | sing | 1.40Å | 1.38Å | Aromatic |
C25 | C26 | doub | 1.38Å | 1.38Å | Aromatic |
N22 | C15 | sing | 1.38Å | 1.35Å | Aromatic |
C28 | C27 | doub | 1.38Å | 1.38Å | Aromatic |
N17 | N16 | sing | 1.29Å | 1.37Å | Aromatic |
C26 | C27 | sing | 1.38Å | 1.38Å | Aromatic |
C26 | C29 | sing | 1.51Å | 1.48Å | |
C15 | N16 | doub | 1.31Å | 1.33Å | Aromatic |
C15 | S14 | sing | 1.76Å | 1.76Å | |
S14 | C13 | sing | 1.81Å | 1.80Å | |
O1 | C2 | doub | 1.21Å | 1.23Å | |
C13 | C2 | sing | 1.51Å | 1.50Å | |
C2 | N3 | sing | 1.35Å | 1.35Å | |
N3 | C4 | sing | 1.40Å | 1.38Å | |
C5 | C4 | doub | 1.39Å | 1.38Å | Aromatic |
C5 | C6 | sing | 1.38Å | 1.38Å | Aromatic |
C4 | C12 | sing | 1.39Å | 1.37Å | Aromatic |
C6 | C7 | doub | 1.38Å | 1.37Å | Aromatic |
C12 | C11 | doub | 1.38Å | 1.36Å | Aromatic |
C7 | C11 | sing | 1.39Å | 1.37Å | Aromatic |
C7 | O8 | sing | 1.37Å | 1.36Å | |
C11 | O10 | sing | 1.36Å | 1.37Å | |
O8 | C9 | sing | 1.44Å | 1.45Å | |
O10 | C9 | sing | 1.44Å | 1.43Å | |
C24 | H1 | sing | 1.08Å | 1.08Å | |
C28 | H2 | sing | 1.08Å | 1.08Å | |
C25 | H3 | sing | 1.08Å | 1.08Å | |
C27 | H4 | sing | 1.08Å | 1.08Å | |
C5 | H5 | sing | 1.08Å | 1.08Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
C12 | H7 | sing | 1.08Å | 1.08Å | |
C20 | H8 | sing | 1.08Å | 1.08Å | |
C9 | H9 | sing | 1.09Å | 1.10Å | |
C9 | H10 | sing | 1.09Å | 1.10Å | |
C29 | H11 | sing | 1.09Å | 1.10Å | |
C29 | H12 | sing | 1.09Å | 1.10Å | |
C29 | H13 | sing | 1.09Å | 1.10Å | |
C13 | H14 | sing | 1.09Å | 1.10Å | |
C13 | H15 | sing | 1.09Å | 1.10Å | |
N3 | H16 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C20 | S19 | C18 | 90.0° | 94.6° |
S19 | C20 | C21 | 112.8° | 105.7° |
S19 | C20 | H8 | 123.6° | 127.2° |
S19 | C18 | N22 | 109.3° | 106.1° |
S19 | C18 | N17 | 135.9° | 145.6° |
C20 | C21 | C23 | 124.8° | 120.9° |
C20 | C21 | N22 | 109.9° | 118.2° |
C21 | C20 | H8 | 123.6° | 127.2° |
C23 | C21 | N22 | 125.2° | 120.9° |
C21 | C23 | C24 | 123.4° | 120.1° |
C21 | C23 | C28 | 117.9° | 120.1° |
C21 | N22 | C18 | 118.0° | 115.5° |
C21 | N22 | C15 | 138.6° | 140.1° |
N22 | C18 | N17 | 114.8° | 108.3° |
C18 | N22 | C15 | 103.4° | 104.4° |
C18 | N17 | N16 | 103.1° | 109.6° |
C23 | C24 | C25 | 120.1° | 119.8° |
C24 | C23 | C28 | 118.8° | 119.7° |
C23 | C24 | H1 | 119.9° | 120.1° |
C24 | C25 | C26 | 120.3° | 120.2° |
C25 | C24 | H1 | 119.9° | 120.1° |
C24 | C25 | H3 | 119.9° | 119.9° |
C23 | C28 | C27 | 121.4° | 119.9° |
C23 | C28 | H2 | 119.3° | 120.1° |
C25 | C26 | C27 | 120.0° | 120.3° |
C25 | C26 | C29 | 120.8° | 119.9° |
C26 | C25 | H3 | 119.9° | 119.9° |
N22 | C15 | N16 | 109.1° | 107.5° |
N22 | C15 | S14 | 121.3° | 126.2° |
C28 | C27 | C26 | 119.4° | 120.1° |
C27 | C28 | H2 | 119.3° | 120.0° |
C28 | C27 | H4 | 120.3° | 120.0° |
N17 | N16 | C15 | 109.6° | 110.1° |
C27 | C26 | C29 | 119.2° | 119.8° |
C26 | C27 | H4 | 120.3° | 119.9° |
C26 | C29 | H11 | 109.5° | 109.4° |
C26 | C29 | H12 | 109.5° | 109.4° |
C26 | C29 | H13 | 109.5° | 109.4° |
N16 | C15 | S14 | 129.6° | 126.2° |
C15 | S14 | C13 | 92.6° | 103.0° |
S14 | C13 | C2 | 107.7° | 109.4° |
S14 | C13 | H14 | 109.9° | 109.5° |
S14 | C13 | H15 | 109.9° | 109.5° |
O1 | C2 | C13 | 127.6° | 120.0° |
O1 | C2 | N3 | 125.6° | 120.0° |
C13 | C2 | N3 | 106.8° | 120.0° |
C2 | C13 | H14 | 109.9° | 109.5° |
C2 | C13 | H15 | 109.9° | 109.5° |
C2 | N3 | C4 | 118.4° | 120.0° |
C2 | N3 | H16 | 120.8° | 120.0° |
N3 | C4 | C5 | 121.5° | 120.0° |
N3 | C4 | C12 | 114.6° | 120.0° |
C4 | N3 | H16 | 120.8° | 120.0° |
C4 | C5 | C6 | 121.3° | 120.1° |
C5 | C4 | C12 | 123.9° | 120.0° |
C4 | C5 | H5 | 119.4° | 120.0° |
C5 | C6 | C7 | 114.1° | 120.1° |
C6 | C5 | H5 | 119.3° | 119.9° |
C5 | C6 | H6 | 122.9° | 120.0° |
C4 | C12 | C11 | 114.3° | 120.0° |
C4 | C12 | H7 | 122.8° | 120.0° |
C6 | C7 | C11 | 124.2° | 120.0° |
C6 | C7 | O8 | 124.7° | 131.4° |
C7 | C6 | H6 | 122.9° | 120.0° |
C12 | C11 | C7 | 122.2° | 119.9° |
C12 | C11 | O10 | 123.5° | 131.5° |
C11 | C12 | H7 | 122.9° | 120.0° |
C11 | C7 | O8 | 111.2° | 108.6° |
C7 | C11 | O10 | 114.4° | 108.7° |
C7 | O8 | C9 | 98.6° | 105.5° |
C11 | O10 | C9 | 96.9° | 105.5° |
O8 | C9 | O10 | 114.8° | 103.7° |
O8 | C9 | H9 | 108.1° | 110.5° |
O8 | C9 | H10 | 108.1° | 110.6° |
O10 | C9 | H9 | 108.1° | 110.5° |
O10 | C9 | H10 | 108.2° | 110.7° |
H9 | C9 | H10 | 109.4° | 110.6° |
H11 | C29 | H12 | 109.5° | 109.5° |
H11 | C29 | H13 | 109.4° | 109.5° |
H12 | C29 | H13 | 109.5° | 109.5° |
H14 | C13 | H15 | 109.4° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
S19 | C20 | C21 | H8 | 180.0° | 179.6° |
S19 | C20 | C21 | C23 | 177.5° | 179.7° |
S19 | C20 | C21 | N22 | 0.1° | 0.4° |
C20 | S19 | C18 | N22 | 0.8° | 0.0° |
C20 | S19 | C18 | N17 | 179.5° | 179.6° |
C18 | S19 | C20 | C21 | 0.5° | 0.2° |
S19 | C18 | N22 | C21 | 0.9° | 0.2° |
S19 | C18 | N22 | N17 | 179.8° | 179.8° |
S19 | C18 | N22 | C15 | 179.5° | 179.8° |
S19 | C18 | N17 | N16 | 179.6° | 179.7° |
C18 | S19 | C20 | H8 | 179.5° | 179.8° |
C20 | C21 | C23 | N22 | 177.0° | 179.9° |
C20 | C21 | N22 | C18 | 0.6° | 0.4° |
C20 | C21 | C23 | C24 | 52.4° | 65.1° |
C20 | C21 | C23 | C28 | 128.6° | 115.0° |
C20 | C21 | N22 | C15 | 180.0° | 179.6° |
C23 | C21 | N22 | C18 | 176.8° | 179.6° |
C21 | C23 | C24 | C28 | 179.0° | 180.0° |
C21 | C23 | C24 | C25 | 179.0° | 180.0° |
C23 | C21 | N22 | C15 | 2.6° | 0.3° |
C21 | C23 | C28 | C27 | 178.8° | 180.0° |
C21 | C23 | C24 | H1 | 1.0° | 0.3° |
C21 | C23 | C28 | H2 | 1.2° | 0.1° |
C23 | C21 | C20 | H8 | 2.5° | 0.1° |
C21 | N22 | C18 | C15 | 179.6° | 180.0° |
C21 | N22 | C18 | N17 | 179.2° | 180.0° |
N22 | C21 | C23 | C24 | 130.6° | 115.0° |
N22 | C21 | C23 | C28 | 48.4° | 64.9° |
C21 | N22 | C15 | N16 | 179.1° | 180.0° |
C21 | N22 | C15 | S14 | 1.6° | 0.1° |
N22 | C21 | C20 | H8 | 179.9° | 180.0° |
N22 | C18 | N17 | N16 | 0.2° | 0.0° |
C18 | N22 | C15 | N16 | 0.4° | 0.0° |
C18 | N22 | C15 | S14 | 178.9° | 180.0° |
N17 | C18 | N22 | C15 | 0.3° | 0.0° |
C18 | N17 | N16 | C15 | 0.1° | 0.0° |
C23 | C24 | C25 | H1 | 180.0° | 179.7° |
C23 | C24 | C25 | C26 | 0.1° | 0.0° |
C24 | C23 | C28 | C27 | 0.2° | 0.1° |
C24 | C23 | C28 | H2 | 179.8° | 180.0° |
C23 | C24 | C25 | H3 | 179.9° | 180.0° |
C25 | C24 | C23 | C28 | 0.0° | 0.0° |
C24 | C25 | C26 | H3 | 180.0° | 179.9° |
C24 | C25 | C26 | C27 | 0.1° | 0.1° |
C24 | C25 | C26 | C29 | 179.9° | 180.0° |
C23 | C28 | C27 | H2 | 180.0° | 179.9° |
C23 | C28 | C27 | C26 | 0.4° | 0.1° |
C28 | C23 | C24 | H1 | 180.0° | 179.7° |
C23 | C28 | C27 | H4 | 179.6° | 180.0° |
C25 | C26 | C27 | C28 | 0.3° | 0.1° |
C25 | C26 | C27 | C29 | 180.0° | 180.0° |
C26 | C25 | C24 | H1 | 180.0° | 179.7° |
C25 | C26 | C27 | H4 | 179.7° | 180.0° |
C25 | C26 | C29 | H11 | 90.0° | 90.0° |
C25 | C26 | C29 | H12 | 150.0° | 150.0° |
C25 | C26 | C29 | H13 | 30.0° | 30.0° |
N22 | C15 | N16 | N17 | 0.3° | 0.0° |
N22 | C15 | N16 | S14 | 179.2° | 179.9° |
N22 | C15 | S14 | C13 | 169.6° | 179.9° |
C28 | C27 | C26 | H4 | 180.0° | 179.9° |
C28 | C27 | C26 | C29 | 179.7° | 180.0° |
N17 | N16 | C15 | S14 | 178.9° | 179.9° |
C26 | C27 | C28 | H2 | 179.6° | 180.0° |
C27 | C26 | C25 | H3 | 180.0° | 180.0° |
C27 | C26 | C29 | H11 | 90.0° | 90.1° |
C27 | C26 | C29 | H12 | 30.0° | 30.0° |
C27 | C26 | C29 | H13 | 150.0° | 150.0° |
C29 | C26 | C25 | H3 | 0.1° | 0.0° |
C29 | C26 | C27 | H4 | 0.3° | 0.1° |
C26 | C29 | H11 | H12 | 120.0° | 120.0° |
C26 | C29 | H11 | H13 | 120.0° | 119.9° |
C26 | C29 | H12 | H13 | 120.0° | 119.9° |
N16 | C15 | S14 | C13 | 9.5° | 0.0° |
C15 | S14 | C13 | C2 | 79.1° | 180.0° |
C15 | S14 | C13 | H14 | 161.2° | 60.0° |
C15 | S14 | C13 | H15 | 40.7° | 60.0° |
S14 | C13 | C2 | O1 | 38.6° | 0.0° |
S14 | C13 | C2 | H14 | 119.7° | 120.0° |
S14 | C13 | C2 | H15 | 119.7° | 120.0° |
S14 | C13 | C2 | N3 | 141.1° | 180.0° |
S14 | C13 | H14 | H15 | 120.8° | 120.0° |
O1 | C2 | C13 | N3 | 179.8° | 179.9° |
O1 | C2 | N3 | C4 | 6.0° | 5.2° |
O1 | C2 | C13 | H14 | 158.4° | 120.0° |
O1 | C2 | C13 | H15 | 81.1° | 120.0° |
O1 | C2 | N3 | H16 | 174.0° | 174.8° |
C13 | C2 | N3 | C4 | 173.8° | 174.7° |
C2 | C13 | H14 | H15 | 120.8° | 120.0° |
C13 | C2 | N3 | H16 | 6.2° | 5.3° |
C2 | N3 | C4 | H16 | 180.0° | 180.0° |
C2 | N3 | C4 | C5 | 15.0° | 33.3° |
C2 | N3 | C4 | C12 | 164.9° | 146.7° |
N3 | C2 | C13 | H14 | 21.4° | 60.1° |
N3 | C2 | C13 | H15 | 99.1° | 60.0° |
N3 | C4 | C5 | C12 | 179.9° | 180.0° |
N3 | C4 | C5 | C6 | 179.8° | 180.0° |
N3 | C4 | C12 | C11 | 179.9° | 179.9° |
N3 | C4 | C5 | H5 | 0.2° | 0.3° |
N3 | C4 | C12 | H7 | 0.1° | 0.0° |
C4 | C5 | C6 | H5 | 180.0° | 179.7° |
C4 | C5 | C6 | C7 | 0.2° | 0.0° |
C5 | C4 | C12 | C11 | 0.0° | 0.1° |
C4 | C5 | C6 | H6 | 179.8° | 180.0° |
C5 | C4 | C12 | H7 | 180.0° | 180.0° |
C5 | C4 | N3 | H16 | 165.0° | 146.7° |
C6 | C5 | C4 | C12 | 0.0° | 0.0° |
C5 | C6 | C7 | H6 | 180.0° | 180.0° |
C5 | C6 | C7 | C11 | 0.3° | 0.0° |
C5 | C6 | C7 | O8 | 179.7° | 180.0° |
C4 | C12 | C11 | H7 | 180.0° | 179.9° |
C4 | C12 | C11 | C7 | 0.1° | 0.1° |
C4 | C12 | C11 | O10 | 179.5° | 180.0° |
C12 | C4 | C5 | H5 | 180.0° | 179.7° |
C12 | C4 | N3 | H16 | 15.1° | 33.3° |
C6 | C7 | C11 | C12 | 0.3° | 0.0° |
C6 | C7 | C11 | O8 | 179.4° | 180.0° |
C6 | C7 | C11 | O10 | 179.4° | 180.0° |
C6 | C7 | O8 | C9 | 167.8° | 162.7° |
C7 | C6 | C5 | H5 | 179.8° | 179.7° |
C12 | C11 | C7 | O10 | 179.7° | 179.9° |
C12 | C11 | C7 | O8 | 179.7° | 180.0° |
C12 | C11 | O10 | C9 | 168.0° | 162.7° |
C11 | C7 | O8 | C9 | 11.6° | 17.3° |
C7 | C11 | O10 | C9 | 11.7° | 17.4° |
C11 | C7 | C6 | H6 | 179.7° | 180.0° |
C7 | C11 | C12 | H7 | 179.9° | 180.0° |
O8 | C7 | C11 | O10 | 0.0° | 0.0° |
C7 | O8 | C9 | O10 | 20.4° | 27.2° |
O8 | C7 | C6 | H6 | 0.3° | 0.0° |
C7 | O8 | C9 | H9 | 100.4° | 145.7° |
C7 | O8 | C9 | H10 | 141.2° | 91.6° |
C11 | O10 | C9 | O8 | 20.0° | 27.2° |
O10 | C11 | C12 | H7 | 0.5° | 0.1° |
C11 | O10 | C9 | H9 | 100.8° | 145.7° |
C11 | O10 | C9 | H10 | 140.8° | 91.4° |
O8 | C9 | O10 | H9 | 120.8° | 118.5° |
O8 | C9 | O10 | H10 | 120.8° | 118.6° |
O8 | C9 | H9 | H10 | 117.6° | 122.8° |
O10 | C9 | H9 | H10 | 117.6° | 122.9° |
H1 | C24 | C25 | H3 | 0.1° | 0.3° |
H2 | C28 | C27 | H4 | 0.4° | 0.1° |
H5 | C5 | C6 | H6 | 0.2° | 0.3° |
H11 | C29 | H12 | H13 | 120.0° | 120.1° |