PJ5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2' | C2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.54Å | 1.52Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| O3' | C3' | sing | 1.43Å | 1.48Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C1' | O1' | sing | 1.43Å | 1.42Å | |
| C1' | C6' | sing | 1.55Å | 1.53Å | |
| C4' | C6' | sing | 1.55Å | 1.59Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C5' | O5' | sing | 1.43Å | 1.38Å | |
| O1' | HA | sing | 0.97Å | 0.95Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C6' | H6' | sing | 1.09Å | 1.10Å | |
| C6' | H6'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HB | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HC | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| O5' | H5' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2' | C2' | C3' | 116.1° | 110.1° |
| O2' | C2' | C1' | 114.6° | 110.0° |
| O2' | C2' | H2' | 108.3° | 110.1° |
| C2' | O2' | HB | 109.5° | 114.1° |
| C3' | C2' | C1' | 103.5° | 106.6° |
| C2' | C3' | O3' | 114.1° | 110.1° |
| C2' | C3' | C4' | 102.5° | 106.6° |
| C3' | C2' | H2' | 106.9° | 110.1° |
| C2' | C3' | H3' | 109.0° | 110.0° |
| C2' | C1' | O1' | 107.2° | 110.5° |
| C2' | C1' | C6' | 105.1° | 104.2° |
| C2' | C1' | H1' | 109.7° | 110.5° |
| C1' | C2' | H2' | 106.9° | 110.0° |
| O3' | C3' | C4' | 112.5° | 110.0° |
| O3' | C3' | H3' | 109.5° | 110.1° |
| C3' | O3' | HC | 109.5° | 113.9° |
| C3' | C4' | C6' | 107.5° | 104.2° |
| C3' | C4' | C5' | 110.8° | 110.5° |
| C4' | C3' | H3' | 109.0° | 110.0° |
| C3' | C4' | H4' | 109.4° | 110.5° |
| O1' | C1' | C6' | 113.7° | 110.5° |
| C1' | O1' | HA | 109.5° | 114.0° |
| O1' | C1' | H1' | 111.2° | 110.5° |
| C1' | C6' | C4' | 102.9° | 102.8° |
| C6' | C1' | H1' | 109.7° | 110.5° |
| C1' | C6' | H6' | 111.1° | 110.8° |
| C1' | C6' | H6'1 | 111.1° | 110.7° |
| C6' | C4' | C5' | 111.4° | 110.5° |
| C4' | C6' | H6' | 111.1° | 110.8° |
| C4' | C6' | H6'1 | 111.1° | 110.9° |
| C6' | C4' | H4' | 108.5° | 110.5° |
| C4' | C5' | O5' | 118.2° | 109.5° |
| C5' | C4' | H4' | 109.2° | 110.5° |
| C4' | C5' | H5'1 | 107.3° | 109.4° |
| C4' | C5' | H5'2 | 107.2° | 109.5° |
| O5' | C5' | H5'1 | 107.2° | 109.5° |
| O5' | C5' | H5'2 | 107.3° | 109.5° |
| C5' | O5' | H5' | 109.5° | 114.0° |
| H6' | C6' | H6'1 | 109.5° | 110.6° |
| H5'1 | C5' | H5'2 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2' | C2' | C3' | C1' | 126.4° | 119.3° |
| O2' | C2' | C3' | H2' | 121.0° | 121.5° |
| O2' | C2' | C1' | H2' | 120.0° | 121.4° |
| O2' | C2' | C3' | O3' | 70.1° | 121.5° |
| O2' | C2' | C3' | C4' | 168.0° | 119.2° |
| O2' | C2' | C1' | O1' | 47.5° | 23.0° |
| O2' | C2' | C1' | C6' | 168.8° | 95.7° |
| O2' | C2' | C1' | H1' | 73.3° | 145.6° |
| O2' | C2' | C3' | H3' | 52.6° | 0.0° |
| C3' | C2' | C1' | H2' | 112.6° | 119.3° |
| C2' | C3' | O3' | C4' | 116.2° | 117.2° |
| C2' | C3' | O3' | H3' | 122.4° | 121.4° |
| C2' | C3' | C4' | H3' | 115.4° | 119.2° |
| C3' | C2' | C1' | O1' | 79.8° | 142.3° |
| C3' | C2' | C1' | C6' | 41.4° | 23.6° |
| C2' | C3' | C4' | C6' | 26.8° | 23.6° |
| C2' | C3' | C4' | C5' | 148.7° | 142.3° |
| C3' | C2' | C1' | H1' | 159.3° | 95.1° |
| C3' | C2' | O2' | HB | 180.0° | 179.9° |
| C2' | C3' | O3' | HC | 180.0° | 61.4° |
| C2' | C3' | C4' | H4' | 90.9° | 95.1° |
| C1' | C2' | C3' | O3' | 163.5° | 119.3° |
| C1' | C2' | C3' | C4' | 41.6° | 0.0° |
| C2' | C1' | O1' | C6' | 115.7° | 114.8° |
| C2' | C1' | O1' | H1' | 119.9° | 122.7° |
| C2' | C1' | C6' | H1' | 117.9° | 118.7° |
| C2' | C1' | C6' | C4' | 23.7° | 37.9° |
| C2' | C1' | O1' | HA | 180.0° | 65.2° |
| C2' | C1' | C6' | H6' | 95.3° | 156.3° |
| C2' | C1' | C6' | H6'1 | 142.6° | 80.6° |
| C1' | C2' | O2' | HB | 59.4° | 62.9° |
| C1' | C2' | C3' | H3' | 73.8° | 119.3° |
| O3' | C3' | C4' | H3' | 121.7° | 121.4° |
| O3' | C3' | C4' | C6' | 149.7° | 142.9° |
| O3' | C3' | C4' | C5' | 88.3° | 98.4° |
| O3' | C3' | C2' | H2' | 50.9° | 0.0° |
| O3' | C3' | C4' | H4' | 32.1° | 24.2° |
| C3' | C4' | C6' | C1' | 2.0° | 37.9° |
| C3' | C4' | C6' | C5' | 121.6° | 118.7° |
| C3' | C4' | C6' | H4' | 118.2° | 118.7° |
| C3' | C4' | C5' | H4' | 120.5° | 122.6° |
| C3' | C4' | C5' | O5' | 24.8° | 175.0° |
| C3' | C4' | C6' | H6' | 121.0° | 156.3° |
| C3' | C4' | C6' | H6'1 | 116.9° | 80.5° |
| C4' | C3' | C2' | H2' | 71.0° | 119.3° |
| C4' | C3' | O3' | HC | 63.8° | 178.6° |
| C3' | C4' | C5' | H5'1 | 96.4° | 65.0° |
| C3' | C4' | C5' | H5'2 | 146.1° | 54.9° |
| O1' | C1' | C6' | H1' | 125.2° | 122.6° |
| O1' | C1' | C6' | C4' | 93.3° | 156.6° |
| O1' | C1' | C6' | H6' | 147.8° | 85.0° |
| O1' | C1' | C6' | H6'1 | 25.7° | 38.1° |
| O1' | C1' | C2' | H2' | 167.5° | 98.4° |
| C1' | C6' | C4' | H6' | 118.9° | 118.4° |
| C1' | C6' | C4' | H6'1 | 118.9° | 118.4° |
| C1' | C6' | C4' | C5' | 123.6° | 156.6° |
| C6' | C1' | O1' | HA | 64.3° | 180.0° |
| C1' | C6' | H6' | H6'1 | 123.1° | 123.2° |
| C6' | C1' | C2' | H2' | 71.2° | 142.9° |
| C1' | C6' | C4' | H4' | 116.2° | 80.7° |
| C6' | C4' | C5' | H4' | 119.8° | 122.6° |
| C6' | C4' | C5' | O5' | 94.8° | 70.2° |
| C4' | C6' | C1' | H1' | 141.6° | 80.8° |
| C4' | C6' | H6' | H6'1 | 123.1° | 123.4° |
| C6' | C4' | C3' | H3' | 88.6° | 95.7° |
| C6' | C4' | C5' | H5'1 | 143.9° | 49.8° |
| C6' | C4' | C5' | H5'2 | 26.4° | 169.7° |
| C4' | C5' | O5' | H5'1 | 121.2° | 120.0° |
| C4' | C5' | O5' | H5'2 | 121.2° | 120.1° |
| C5' | C4' | C6' | H6' | 117.5° | 85.0° |
| C5' | C4' | C6' | H6'1 | 4.6° | 38.3° |
| C5' | C4' | C3' | H3' | 33.4° | 23.0° |
| C4' | C5' | H5'1 | H5'2 | 116.0° | 120.0° |
| C4' | C5' | O5' | H5' | 180.0° | 180.0° |
| O5' | C5' | C4' | H4' | 145.3° | 52.4° |
| O5' | C5' | H5'1 | H5'2 | 116.1° | 120.0° |
| HA | O1' | C1' | H1' | 60.1° | 57.5° |
| H1' | C1' | C6' | H6' | 22.6° | 37.6° |
| H1' | C1' | C6' | H6'1 | 99.5° | 160.7° |
| H1' | C1' | C2' | H2' | 46.7° | 24.2° |
| H6' | C6' | C4' | H4' | 2.8° | 37.6° |
| H6'1 | C6' | C4' | H4' | 124.9° | 160.9° |
| H2' | C2' | O2' | HB | 59.8° | 58.5° |
| H2' | C2' | C3' | H3' | 173.6° | 121.5° |
| H3' | C3' | O3' | HC | 57.6° | 60.0° |
| H3' | C3' | C4' | H4' | 153.8° | 145.7° |
| H4' | C4' | C5' | H5'1 | 24.1° | 172.4° |
| H4' | C4' | C5' | H5'2 | 93.4° | 67.6° |
| H5'1 | C5' | O5' | H5' | 58.7° | 60.0° |
| H5'2 | C5' | O5' | H5' | 58.8° | 59.9° |
